View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8959_low_25 (Length: 397)
Name: NF8959_low_25
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 41307239 - 41307601
Alignment:
| Q |
19 |
ctagttatctacacgcatgattaaaaaataagataggtagaaagtgactaatgatatttatgttggattgcaatatgaaggagaaggtagctatgatcac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
41307239 |
ctagttatctacacgcatgattaaaaaataagataggtagaaagtgactaatgatatttatgttgtattgcaatatgaaggtgaaggtagctatgatcac |
41307338 |
T |
|
| Q |
119 |
gacacctgttctacttgtgttctgcataaccgtagctgtttcaacttttttcttgcacgatacaactcatagaaagttacttgttggtagcataggtttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41307339 |
gacacctgttctacttgtgttctgcataaccgtagctgtttcaacttttttcttgcacgatacaactcatagaaagttacttgttggtagcataggttta |
41307438 |
T |
|
| Q |
219 |
gttgtttctgtagcattatatggttctcctcttgttgcaatggtgagtcactcatttttccttccattcataattttacattaacatttttagtccgtct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41307439 |
gttgtttctgtagcattatatggttctcctcttgttgcaatggtgagtcactcatttttccttccattcataattttacattaacatttttagtctgtct |
41307538 |
T |
|
| Q |
319 |
atgtttgatatcataccgtgactctggcacgctaacggtgatatcaaacatagactaacaatc |
381 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
41307539 |
atgtttgatatcataccgtgattctggcacgctcacggtgatatcaaacatagattaacaatc |
41307601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 41297504 - 41297671
Alignment:
| Q |
101 |
gaaggtagctatgatcacgacacctgttctacttgtgttctgcataaccgtagctgtttcaacttttttcttgcacgatacaactcatagaaagttactt |
200 |
Q |
| |
|
|||||| || ||||||| |||||||||||| ||||||||||||||| | |||||||||| |||||| || || |||||| |||| |||||||||||| |
|
|
| T |
41297504 |
gaaggtggcgatgatcatgacacctgttctgcttgtgttctgcatagttgcagctgtttcagctttttcattccatgatacagctcacagaaagttactt |
41297603 |
T |
|
| Q |
201 |
gttggtagcataggttttgttgtttctgtagcattatatggttctcctcttgttgcaatggtgagtca |
268 |
Q |
| |
|
||||| ||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41297604 |
gttggaagcataggtttaggtgtttctgttgcattgtatggttctcctcttgttgcaatggtgagtca |
41297671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University