View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8959_low_27 (Length: 392)
Name: NF8959_low_27
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 40689887 - 40690156
Alignment:
| Q |
18 |
aagcaacaataacaacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgaggcgtcaccgc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40689887 |
aagcaacaataacaacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgaggcgccaccgt |
40689986 |
T |
|
| Q |
118 |
gcgccggtgggaacatctgcagccaacactacactctctttgacaccaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatgttttgt |
217 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40689987 |
gcaccggtgggaacttctgcagccaacaccacactctctttgacaacaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatgttttgt |
40690086 |
T |
|
| Q |
218 |
ctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40690087 |
ctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc |
40690156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 34710513 - 34710589
Alignment:
| Q |
30 |
caacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga |
106 |
Q |
| |
|
|||||| || |||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
34710513 |
caacaaatccaaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga |
34710589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 34714219 - 34714285
Alignment:
| Q |
40 |
aaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga |
106 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
34714219 |
aaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga |
34714285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 34714363 - 34714448
Alignment:
| Q |
193 |
cctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctt |
281 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||||||||||||||||| || |||| ||||| ||||| | ||||||||||| |
|
|
| T |
34714363 |
cctagaaagaaaatgaatgtct---ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagagttcaagtttgcctt |
34714448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 34710689 - 34710740
Alignment:
| Q |
218 |
ctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||| |||||||| |
|
|
| T |
34710689 |
ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagaatc |
34710740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 20925806 - 20925729
Alignment:
| Q |
31 |
aacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg |
108 |
Q |
| |
|
|||||| | ||| ||||||||||||||||||||||||| || |||||||| || |||||| | ||||| || |||||| |
|
|
| T |
20925806 |
aacaaggccaagattcatgagtgttccatttgtggttcagagttcacatccggacaagcattgggtggacacatgagg |
20925729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 35506177 - 35506246
Alignment:
| Q |
39 |
taaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg |
108 |
Q |
| |
|
||||||||||| |||||| || ||||| ||||||||||||| ||||||||| | ||||| || |||||| |
|
|
| T |
35506177 |
taaggttcatgggtgttcaatatgtggagctgaattcacatcaggtcaagcattgggtggtcacatgagg |
35506246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University