View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_low_32 (Length: 386)
Name: NF8959_low_32
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 44860418 - 44860058
Alignment:
| Q |
8 |
aggagcagagaaaggcatgccaagagatgtactgtgttcacattaatattctcacctttgaagttgaatgcttgtaaaactggaatgaagtgacaaattc |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44860418 |
aggaacagagaaaggcatgccaagagatgtactgtgttcacattattattctcacctttgaagttgaatgcttgtaaaactggaatgaagtgacaaattc |
44860319 |
T |
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| Q |
108 |
agccacttgaaagnnnnnnncgacgtcagctttttgaactgcaggatgttccttttcaatatcttcacggacggatcgcatcaaaactgatacagattta |
207 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44860318 |
agccacttgaaagaaaaaaacgacgtcagttttttgaactgcaggatgttccttttcaatatcttcacggacggatcgcatcaaaactgatacagattta |
44860219 |
T |
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| Q |
208 |
agtatcaatgagattacttttacctttattataataggaaaccnnnnnnnnnnnntatatcatttgtaaatcgcaaatgatacaccattttctgaaaaag |
307 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44860218 |
agtatcaatgagattacttgtacctttattataataggaaacccacacacacacatatatcatttgtaaatcgcaaatgatacaccattttctgaaaaag |
44860119 |
T |
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| Q |
308 |
cataccgttgtatcccacagaaagaaactgatcgacaaatccacgaagcaactccaagatt |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44860118 |
cataccgttgtatcccacagaaagaaactgatcgacaaatccacgaagcaactccaagatt |
44860058 |
T |
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