View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8959_low_36 (Length: 361)

Name: NF8959_low_36
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8959_low_36
NF8959_low_36
[»] chr8 (12 HSPs)
chr8 (19-351)||(43732148-43732475)
chr8 (235-282)||(13984789-13984836)
chr8 (243-282)||(10824568-10824607)
chr8 (232-279)||(33830716-33830763)
chr8 (105-156)||(41444890-41444941)
chr8 (105-155)||(12492428-12492478)
chr8 (105-155)||(36544798-36544848)
chr8 (105-155)||(36565827-36565877)
chr8 (231-272)||(4032984-4033025)
chr8 (229-266)||(6510913-6510950)
chr8 (85-156)||(25985187-25985256)
chr8 (242-282)||(30113676-30113716)
[»] chr3 (12 HSPs)
chr3 (15-86)||(43821867-43821938)
chr3 (231-282)||(30345278-30345329)
chr3 (102-156)||(1470680-1470734)
chr3 (105-155)||(19736812-19736862)
chr3 (85-155)||(19757714-19757784)
chr3 (85-155)||(25191025-25191095)
chr3 (85-154)||(27917219-27917288)
chr3 (101-156)||(1448195-1448250)
chr3 (105-155)||(51448295-51448345)
chr3 (105-155)||(52138474-52138524)
chr3 (231-272)||(25191130-25191171)
chr3 (84-156)||(46145798-46145870)
[»] chr2 (11 HSPs)
chr2 (231-282)||(17581219-17581270)
chr2 (231-282)||(6238233-6238284)
chr2 (231-272)||(41197718-41197759)
chr2 (85-156)||(11992672-11992743)
chr2 (105-155)||(2610174-2610224)
chr2 (101-155)||(8180426-8180480)
chr2 (105-155)||(13148959-13149009)
chr2 (231-272)||(4807343-4807384)
chr2 (105-146)||(14769945-14769986)
chr2 (231-272)||(45368114-45368155)
chr2 (105-145)||(12904624-12904664)
[»] chr7 (9 HSPs)
chr7 (231-272)||(33072705-33072746)
chr7 (105-155)||(32630253-32630303)
chr7 (105-155)||(33350392-33350442)
chr7 (85-155)||(38606651-38606721)
chr7 (105-155)||(46356437-46356487)
chr7 (231-272)||(31004974-31005015)
chr7 (231-272)||(33350296-33350337)
chr7 (231-272)||(37616667-37616708)
chr7 (231-272)||(46356341-46356382)
[»] chr1 (13 HSPs)
chr1 (231-279)||(46226765-46226813)
chr1 (231-282)||(34827582-34827633)
chr1 (231-282)||(27445649-27445700)
chr1 (233-264)||(52739965-52739996)
chr1 (305-351)||(7814326-7814372)
chr1 (231-265)||(9592485-9592519)
chr1 (105-155)||(43240967-43241017)
chr1 (105-155)||(51601704-51601754)
chr1 (105-146)||(19936176-19936217)
chr1 (231-272)||(32066761-32066802)
chr1 (105-154)||(40419328-40419377)
chr1 (231-272)||(51441254-51441295)
chr1 (243-283)||(7814226-7814266)
[»] chr4 (15 HSPs)
chr4 (105-156)||(10776005-10776056)
chr4 (85-156)||(30807243-30807314)
chr4 (102-156)||(55768960-55769014)
chr4 (102-156)||(55833216-55833270)
chr4 (231-282)||(3273173-3273224)
chr4 (231-282)||(17666518-17666569)
chr4 (105-155)||(435875-435925)
chr4 (232-282)||(8917807-8917857)
chr4 (105-155)||(23906887-23906937)
chr4 (316-350)||(28277758-28277792)
chr4 (105-155)||(33226855-33226905)
chr4 (105-155)||(48174679-48174729)
chr4 (231-272)||(27450663-27450704)
chr4 (231-272)||(33226960-33227001)
chr4 (85-141)||(42037521-42037577)
[»] chr5 (16 HSPs)
chr5 (232-282)||(20077297-20077347)
chr5 (231-272)||(1288079-1288120)
chr5 (231-272)||(24178275-24178316)
chr5 (100-155)||(1288170-1288225)
chr5 (85-156)||(3096827-3096898)
chr5 (105-156)||(28977443-28977494)
chr5 (235-282)||(36200537-36200584)
chr5 (105-155)||(2076060-2076110)
chr5 (105-155)||(3301495-3301545)
chr5 (85-155)||(3394356-3394426)
chr5 (85-155)||(16347968-16348038)
chr5 (105-155)||(20318637-20318687)
chr5 (85-146)||(35685510-35685571)
chr5 (85-146)||(38579067-38579128)
chr5 (85-157)||(21915530-21915602)
chr5 (105-157)||(43558400-43558452)
[»] scaffold0113 (1 HSPs)
scaffold0113 (85-153)||(12164-12232)
[»] chr6 (4 HSPs)
chr6 (231-266)||(33495948-33495983)
chr6 (85-155)||(10100423-10100493)
chr6 (105-155)||(20428222-20428272)
chr6 (102-154)||(5631464-5631516)
[»] scaffold0570 (1 HSPs)
scaffold0570 (105-155)||(2856-2906)
[»] scaffold0171 (1 HSPs)
scaffold0171 (105-155)||(5838-5888)
[»] scaffold0018 (1 HSPs)
scaffold0018 (231-272)||(31219-31260)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 43732148 - 43732475
Alignment:
Q  19 ttgattttaggctaaggaggttagaagggttgcggataatatggtacagcttggtaaagaggttagttttgtactattcattcaaaatatttaaaccatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| ||    
T  43732148 ttgattttaggctaaggaggttagaagggttgcggataatatggtacagcttggtaaagaggttagttttgt----ttcattcaaaatatttaaaccgtg 43732243  T
Q  119 ttacttgtgctatgatatgatctccaaccttcacctctgtatgatatgcttttctactttcacctctcattcttttaccattgatcacccaatgtatatt 218  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43732244 ttacttgtgctatgatatgatctccaactttcacct-tctatgatatgattttctactttcacctctcattcttttaccattgatcacccaatgtatatt 43732342  T
Q  219 ttttaaactagcattcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgatatcaaagccacgcttaagacgctttgtatggagcaga 318  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43732343 ttttaaactagcattcaagttgggtggttgaaatggagaagagtctcaagtgttatatgtgatatcaaagccccgcttaagacgctttgtatggagcaga 43732442  T
Q  319 atgttggacggtgaagaaccaacacaagaataa 351  Q
    |||||||||||||||||||||||||||||||||    
T  43732443 atgttggacggtgaagaaccaacacaagaataa 43732475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 13984789 - 13984836
Alignment:
Q  235 aagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||||||    
T  13984789 aagttggatggttgaaatgaagaagagcctcaagtgttttatgtgata 13984836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 10824607 - 10824568
Alignment:
Q  243 tggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  10824607 tggttgaaatggagaagagtctcaggtgttttatgtgata 10824568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 33830763 - 33830716
Alignment:
Q  232 ttcaagttggatggttgaaatggagaagagtctcaagtgttatatgtg 279  Q
    |||||||||||||||| |||||  ||||||||||||||||| ||||||    
T  33830763 ttcaagttggatggttaaaatgttgaagagtctcaagtgttttatgtg 33830716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 41444890 - 41444941
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    |||||||||||| || ||||||| |||||||||||||||| | |||||||||    
T  41444890 atatttaaaccaagtaacttgtggtatgatatgatctccacctttcacctct 41444941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 12492428 - 12492478
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  12492428 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 12492478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 36544848 - 36544798
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  36544848 atatttaaaccttgtaacttggggtatgatatgatctccaactttcacctc 36544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 36565827 - 36565877
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  36565827 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 36565877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 4033025 - 4032984
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||||||| ||||||||||||||||||| |||| |||||    
T  4033025 attcaagttgggtggttgaaatggagaagagcctcaggtgtt 4032984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 6510950 - 6510913
Alignment:
Q  229 gcattcaagttggatggttgaaatggagaagagtctca 266  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  6510950 gcattcaagttgagtggttgaaatggagaagagtctca 6510913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 25985256 - 25985187
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    |||||||||||  || ||| ||||||||||| ||| ||||||| ||||||||||  |||||| |||||||||    
T  25985256 ttttgtactatagatccaatatatttaaaccgtgtaacttgtggtatgatatga--tccaactttcacctct 25985187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 30113716 - 30113676
Alignment:
Q  242 atggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    |||||||||||||||||||||| || ||||| |||||||||    
T  30113716 atggttgaaatggagaagagtcgcaggtgttttatgtgata 30113676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 43821867 - 43821938
Alignment:
Q  15 aattttgattttaggctaaggaggttagaagggttgcggataatatggtacagcttggtaaagaggttagtt 86  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43821867 aattttgattttaggctaaggaggttagaaggcttgcggataatatggtacagcttggtaaagaggttagtt 43821938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 30345278 - 30345329
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||| ||||    
T  30345278 attcaagttgggtggttgaaatggagaagagtctcaggtgttttatgcgata 30345329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 1470680 - 1470734
Alignment:
Q  102 aaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    |||||||||||||||||  |||| || |||||||||||||||||| |||||||||    
T  1470680 aaaatatttaaaccatgcaacttttggtatgatatgatctccaactttcacctct 1470734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 19736862 - 19736812
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||||||| ||||| | |||||||||||||||||| ||||||||    
T  19736862 atatttaaaccatgtaacttggggtatgatatgatctccaactttcacctc 19736812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 19757784 - 19757714
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    |||||||||||  |  ||| ||||||||||||||| ||||| | |||||||||||||||||| ||||||||    
T  19757784 ttttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcacctc 19757714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 25191095 - 25191025
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    |||||||||||  |  ||| ||||||||||| ||| ||||| |||||||||||||||||||| ||||||||    
T  25191095 ttttgtactatagacccaagatatttaaaccgtgtaacttgggctatgatatgatctccaactttcacctc 25191025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 27917288 - 27917219
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacct 154  Q
    |||||||||||  | |||| ||||||||||| ||| ||||| | |||||||||||||||||| |||||||    
T  27917288 ttttgtactatggactcaagatatttaaaccgtgtaacttgggatatgatatgatctccaactttcacct 27917219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 1448195 - 1448250
Alignment:
Q  101 caaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    ||||||||||||||||||  |||| || |||||||||||||||||| || ||||||    
T  1448195 caaaatatttaaaccatgcaacttttgatatgatatgatctccaacttttacctct 1448250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 51448295 - 51448345
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  51448295 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 51448345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 52138524 - 52138474
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  52138524 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 52138474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 25191130 - 25191171
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| |||||||||||||||||||||||| |||||    
T  25191130 attcaagctgggtggttgaaatggagaagagtctcaggtgtt 25191171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 46145870 - 46145798
Alignment:
Q  84 gttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    ||||||||||||  | |||||||||||||||| | | ||||||| ||||| || ||||||||| || ||||||    
T  46145870 gttttgtactatggactcaaaatatttaaaccgtataacttgtggtatgacataatctccaactttaacctct 46145798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 17581219 - 17581270
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  17581219 attcaagttggatggttcaaatggagaagagtctcaggtgttttatgtgata 17581270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 6238284 - 6238233
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||||||||||||||||||||||||||| |||| ||||| | |||||||    
T  6238284 attcaagttggatggttgaaatggagaagagcctcatgtgttttgtgtgata 6238233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 41197759 - 41197718
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  41197759 attcaagttgggtggttgaaatggagaagagtctcaggtgtt 41197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 11992672 - 11992743
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    |||||||||||  |  ||| ||||||||||| ||| ||||| | |||||||||||||||||| |||||||||    
T  11992672 ttttgtactatagacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctct 11992743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 2610224 - 2610174
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  2610224 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 2610174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 8180480 - 8180426
Alignment:
Q  101 caaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||||||| ||| |||||   |||||||||||||||||| ||||||||    
T  8180480 caaaatatttaaaccgtgtaacttggagtatgatatgatctccaactttcacctc 8180426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 13149009 - 13148959
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  13149009 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 13148959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 4807343 - 4807384
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| |||||||||||||||||||||||| |||||    
T  4807343 attcaagatgggtggttgaaatggagaagagtctcaggtgtt 4807384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 14769986 - 14769945
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaac 146  Q
    ||||||||||| ||| |||| |||||||||||||||||||||    
T  14769986 atatttaaaccgtgtaacttatgctatgatatgatctccaac 14769945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 45368155 - 45368114
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| |||||||||||||||||||||||| |||||    
T  45368155 attcaagctgggtggttgaaatggagaagagtctcaggtgtt 45368114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 12904664 - 12904624
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaa 145  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  12904664 atatttaaaccgtgtaacttgtgatatgatatgatctccaa 12904624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 33072705 - 33072746
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  33072705 attcaagttggatggttgaaatggagaagagcctcaagtgtt 33072746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 32630303 - 32630253
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  32630303 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 32630253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 33350392 - 33350442
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  33350392 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 33350442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 38606721 - 38606651
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    |||||||||||  |  ||| ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  38606721 ttttgtactatggacccaagatatttaaaccgtgtaacttgggatatgatatgatctccaactttcacctc 38606651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 46356437 - 46356487
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  46356437 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 46356487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 31004974 - 31005015
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||||||| ||||||||||||||||||| |||| |||||    
T  31004974 attcaagttgggtggttgaaatggagaagagcctcaggtgtt 31005015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 33350337 - 33350296
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||    
T  33350337 attcaagctgggtggttgaaatggagaagagcctcaagtgtt 33350296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 37616667 - 37616708
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||    
T  37616667 attcaagctgggtggttgaaatggagaagagcctcaagtgtt 37616708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 46356382 - 46356341
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||||||| ||||||||||||||||||| |||| |||||    
T  46356382 attcaagttgggtggttgaaatggagaagagcctcaggtgtt 46356341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 46226813 - 46226765
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgttatatgtg 279  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||||||    
T  46226813 attcaagttggatggttgaaatggagaagagcatcaagtgttttatgtg 46226765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 34827633 - 34827582
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    |||||||||| |||||||||||||||||||| |||| ||||| |||||||||    
T  34827633 attcaagttgaatggttgaaatggagaagagcctcatgtgttttatgtgata 34827582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 27445649 - 27445700
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||||||| ||||||||||||||||||||  | |||||| |||||||||    
T  27445649 attcaagttggttggttgaaatggagaagagttccgagtgttttatgtgata 27445700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 264
Target Start/End: Complemental strand, 52739996 - 52739965
Alignment:
Q  233 tcaagttggatggttgaaatggagaagagtct 264  Q
    ||||||||||||||||||||||||||||||||    
T  52739996 tcaagttggatggttgaaatggagaagagtct 52739965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 7814326 - 7814372
Alignment:
Q  305 ttgtatggagcagaatgttggacggtgaagaaccaacacaagaataa 351  Q
    ||||||||| |||||||||||| ||| |||||||||||| |||||||    
T  7814326 ttgtatggaacagaatgttggatggttaagaaccaacacgagaataa 7814372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 9592485 - 9592519
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctc 265  Q
    ||||||||||| |||||||||||||||||||||||    
T  9592485 attcaagttgggtggttgaaatggagaagagtctc 9592519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 43240967 - 43241017
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  43240967 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 43241017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 51601754 - 51601704
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  51601754 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 51601704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 19936217 - 19936176
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaac 146  Q
    ||||||||||||||| ||||| | ||||||||||||||||||    
T  19936217 atatttaaaccatgtaacttggggtatgatatgatctccaac 19936176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 32066802 - 32066761
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||||||||||||| ||||||||||||| |||| |||||    
T  32066802 attcaagttggatggttaaaatggagaagagcctcaggtgtt 32066761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 40419377 - 40419328
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacct 154  Q
    ||||||||||  ||| ||||||| |||||||||||||||||| |||||||    
T  40419377 atatttaaactgtgtaacttgtggtatgatatgatctccaactttcacct 40419328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 51441295 - 51441254
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||    
T  51441295 attcaagctgggtggttgaaatggagaagagcctcaagtgtt 51441254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 7814226 - 7814266
Alignment:
Q  243 tggttgaaatggagaagagtctcaagtgttatatgtgatat 283  Q
    |||||||||||  ||||||||||||||||| ||||||||||    
T  7814226 tggttgaaatgaggaagagtctcaagtgttttatgtgatat 7814266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 10776005 - 10776056
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    ||||||||||||||| ||||||| |||||||||||||||||| ||| |||||    
T  10776005 atatttaaaccatgtaacttgtggtatgatatgatctccaactttcccctct 10776056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 30807314 - 30807243
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    |||||||||||  | || ||| ||||||||| ||| ||||||| |||||||||||||||||| |||||||||    
T  30807314 ttttgtactatagactccaaacatttaaaccgtgtaacttgtggtatgatatgatctccaactttcacctct 30807243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 55768960 - 55769014
Alignment:
Q  102 aaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    |||||||||||||| ||||||||||| ||||| ||||||| |||| |||||||||    
T  55768960 aaaatatttaaaccgtgttacttgtggtatgacatgatcttcaactttcacctct 55769014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 55833216 - 55833270
Alignment:
Q  102 aaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    |||||||||||||| ||||||||||| ||||| ||||||| |||| |||||||||    
T  55833216 aaaatatttaaaccgtgttacttgtggtatgacatgatcttcaactttcacctct 55833270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 3273173 - 3273224
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||||||||||||||||||||||| ||| ||||  |||| |||||||||    
T  3273173 attcaagttggatggttgaaatggagatgagcctcatttgttttatgtgata 3273224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 17666569 - 17666518
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||||||||| |||||||||||||||||  ||| ||||| |||||||||    
T  17666569 attcaagttggattgttgaaatggagaagagcatcatgtgttttatgtgata 17666518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 435925 - 435875
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  435925 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 435875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 8917857 - 8917807
Alignment:
Q  232 ttcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||||||||  ||||||| |||||||| |||||||||| |||||||||    
T  8917857 ttcaagttggataattgaaattgagaagagcctcaagtgttttatgtgata 8917807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 23906887 - 23906937
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  23906887 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 23906937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 28277792 - 28277758
Alignment:
Q  316 agaatgttggacggtgaagaaccaacacaagaata 350  Q
    |||||||||||| ||||||||||||||||||||||    
T  28277792 agaatgttggacagtgaagaaccaacacaagaata 28277758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 33226905 - 33226855
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  33226905 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 33226855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 48174679 - 48174729
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  48174679 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 48174729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 27450704 - 27450663
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||    
T  27450704 attcaagctgggtggttgaaatggagaagagcctcaagtgtt 27450663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 33226960 - 33227001
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| |||||||||||||||||||||||| |||||    
T  33226960 attcaagctgggtggttgaaatggagaagagtctcaggtgtt 33227001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 42037577 - 42037521
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatct 141  Q
    |||||||||||  |||||| ||||||||||| ||| |||||||  ||||||||||||    
T  42037577 ttttgtactatagattcaagatatttaaaccgtgtaacttgtgggatgatatgatct 42037521  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 20077347 - 20077297
Alignment:
Q  232 ttcaagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    |||| ||||||||||||||||||||||||| |||| ||||| |||||||||    
T  20077347 ttcaggttggatggttgaaatggagaagagcctcaggtgttttatgtgata 20077297  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 1288120 - 1288079
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  1288120 attcaagttggatggttgaaatggagaagagcctcatgtgtt 1288079  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 24178275 - 24178316
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  24178275 attcaagttgggtggttgaaatggagaagagcctcaagtgtt 24178316  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 1288170 - 1288225
Alignment:
Q  100 tcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    |||| ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  1288170 tcaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 1288225  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 3096898 - 3096827
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    |||||||||||  |  ||| ||||||||||||||| |||||||||  ||||||||||| ||| |||||||||    
T  3096898 ttttgtactataaacccaagatatttaaaccatgtaacttgtgctgagatatgatctctaactttcacctct 3096827  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 28977443 - 28977494
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctct 156  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| |||||||||    
T  28977443 atatttaaaccgtgtgacttggggtatgatatgatctccaactttcacctct 28977494  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 36200537 - 36200584
Alignment:
Q  235 aagttggatggttgaaatggagaagagtctcaagtgttatatgtgata 282  Q
    ||||||| ||||||||||||||||||| |||| ||||| |||||||||    
T  36200537 aagttgggtggttgaaatggagaagagactcatgtgttttatgtgata 36200584  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 2076060 - 2076110
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  2076060 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 2076110  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 3301545 - 3301495
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  3301545 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 3301495  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 3394426 - 3394356
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    |||||||||||  |  ||| ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  3394426 ttttgtactatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 3394356  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 16347968 - 16348038
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    |||||||||||  |  ||| ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  16347968 ttttgtactatggacacaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 16348038  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 20318687 - 20318637
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  20318687 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 20318637  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 35685571 - 35685510
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaac 146  Q
    |||||||||||  || ||| |||||||||| |||||||||||| ||||||||| ||| ||||    
T  35685571 ttttgtactataaatccaatatatttaaactatgttacttgtgatatgatatgctcttcaac 35685510  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 38579067 - 38579128
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaac 146  Q
    |||||||||||  | |||| ||||||||||  ||| ||||||||||| ||||||||||||||    
T  38579067 ttttgtactatcaactcaagatatttaaactgtgtaacttgtgctataatatgatctccaac 38579128  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 21915602 - 21915530
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctctg 157  Q
    |||||||||||| |  ||| ||||||||||| ||| ||||||  |||||||| ||||| ||| ||||||||||    
T  21915602 ttttgtactattgaaccaatatatttaaaccgtgtaacttgtattatgatataatctcgaactttcacctctg 21915530  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 43558400 - 43558452
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctctg 157  Q
    ||||||||| | ||| ||||||| |||| ||||||||||||| ||||||||||    
T  43558400 atatttaaatcgtgtaacttgtggtatgctatgatctccaactttcacctctg 43558452  T

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Target: scaffold0113 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 12164 - 12232
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacc 153  Q
    |||||||||||  |  ||| ||||||||||||||| ||||| | |||||||||||||||||| ||||||    
T  12164 ttttgtactatggacccaagatatttaaaccatgtaacttggggtatgatatgatctccaactttcacc 12232  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 33495948 - 33495983
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctca 266  Q
    ||||||| ||||||||||||||||||||||||||||    
T  33495948 attcaagctggatggttgaaatggagaagagtctca 33495983  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 10100423 - 10100493
Alignment:
Q  85 ttttgtactattcattcaaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    |||||||||||  |  ||| ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  10100423 ttttgtactatggacccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 10100493  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 20428222 - 20428272
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    |||||||||||  || ||||||| |||||||||||||||||| ||||||||    
T  20428222 atatttaaaccgcgtaacttgtggtatgatatgatctccaactttcacctc 20428272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 5631516 - 5631464
Alignment:
Q  102 aaaatatttaaaccatgttacttgtgctatgatatgatctccaaccttcacct 154  Q
    |||||||||||||| ||| ||||| | |||||||||||||| ||| |||||||    
T  5631516 aaaatatttaaaccgtgtaacttggggtatgatatgatctctaactttcacct 5631464  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 2856 - 2906
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  2856 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 2906  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 5888 - 5838
Alignment:
Q  105 atatttaaaccatgttacttgtgctatgatatgatctccaaccttcacctc 155  Q
    ||||||||||| ||| ||||| | |||||||||||||||||| ||||||||    
T  5888 atatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctc 5838  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 31219 - 31260
Alignment:
Q  231 attcaagttggatggttgaaatggagaagagtctcaagtgtt 272  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||    
T  31219 attcaagctgggtggttgaaatggagaagagcctcaagtgtt 31260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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