View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8959_low_4 (Length: 925)

Name: NF8959_low_4
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8959_low_4
NF8959_low_4
[»] chr8 (3 HSPs)
chr8 (33-544)||(3427967-3428478)
chr8 (689-907)||(3426828-3427049)
chr8 (543-692)||(3427795-3427944)
[»] chr5 (5 HSPs)
chr5 (400-542)||(9211459-9211606)
chr5 (400-542)||(9369879-9370026)
chr5 (546-581)||(19242401-19242436)
chr5 (546-588)||(9211389-9211431)
chr5 (546-579)||(12560227-12560260)
[»] chr3 (6 HSPs)
chr3 (546-581)||(20798780-20798815)
chr3 (546-588)||(9450789-9450831)
chr3 (546-588)||(17724638-17724680)
chr3 (546-588)||(19025867-19025909)
chr3 (546-588)||(26640805-26640847)
chr3 (546-588)||(28838401-28838443)
[»] chr7 (1 HSPs)
chr7 (546-588)||(19545424-19545466)
[»] chr1 (2 HSPs)
chr1 (546-588)||(1466862-1466904)
chr1 (546-588)||(35923325-35923367)


Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 33 - 544
Target Start/End: Complemental strand, 3428478 - 3427967
Alignment:
Q  33 aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatagagggaaagttaggagat 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3428478 aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatatagggaaagttaggagat 3428379  T
Q  133 caaggagcaaaaacattccttaattggtttctgcaagagctttttgagtaagacatttgaagtttttctacacaaaattagtcatcagtgagaccaagtt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428378 caaggagcaaaaacattccttaattggtttctgcaagagctttttgagtaagacatttgaagtttttctacacaaaattagtcatcagtgagaccaagtt 3428279  T
Q  233 tattcatagcctttgtaacgcatattatcagttcaacaaaaaatatcggattcaacaactgcaatatgattaaacatgctctgtctatttggatctaatg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  3428278 tattcatagcctttgtaacgcatattatcagttcaacaaaaaatatcggattcaacaactgcaatatgattaaacatactttgtctatttggatctaatg 3428179  T
Q  333 gagtagcaaatgtgtgagctagggtatgaactgctgacacttgaatggtgtttagaatgtcataatataagtcccacatcggaagatttgtagtgaataa 432  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  3428178 gagtggcaaatgtgtgagctagggtatgaactgctgacacttgaatggtgtttagaatgtaataataaaagtcccacatcggaagatttatagtgaataa 3428079  T
Q  433 tgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgttgtgatcaagaaggcccatcgtctaggcgtgtgacc 532  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3428078 tgtggagcatgagttataaaatagaagtgtgtgacacattgcagcatacttacctggcaggtgttgtgatcaagaaggcccatcgtctaggcgtgtgacc 3427979  T
Q  533 tccattgcacct 544  Q
    ||||||||||||    
T  3427978 tccattgcacct 3427967  T

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Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 689 - 907
Target Start/End: Complemental strand, 3427049 - 3426828
Alignment:
Q  689 cttactaatctgtaatatagtgtaataggaagaaggtattaatgttgaatgtacgcgatataagttttggtgtctactacagaaaattaggctgtcaatt 788  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3427049 cttactaatttgtaatatagtgtaataggaagaaggtattaatgttgaatgtacgcgatataaattttggtgtctactacagaaaattaggctgtcaatt 3426950  T
Q  789 tctagagtttaaataaactca-tttgtctacgtg--atcaacttgtaaactcgacttatggattctcacaagtttatttcatattaaaataatatatatg 885  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3426949 tctagagtttaaataaactcattttgtctacgtgaaatcaacttgtaaactcgacttatggattctcacaagtttatttcatattaaaataatatatatg 3426850  T
Q  886 agacatacttatataatacaat 907  Q
    ||||||||||||||||||||||    
T  3426849 agacatacttatataatacaat 3426828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 543 - 692
Target Start/End: Complemental strand, 3427944 - 3427795
Alignment:
Q  543 ctgcccaagtggtggagcttacatcataatttgttgcagtaggggcatgctaatatactgtgctcatcttctccttttgatgcaattgttgaaggttgaa 642  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3427944 ctgcccaagtggtggagtttacatcgtaatttgttgcagtaggggcatgctaatatattgtgctcatcttctccttttgatgcaattgttgaaggttgaa 3427845  T
Q  643 atttgcgggctgattaggttgggtaaatatccgatggaagctactactta 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3427844 atttgcgggctgattaggttgggtaaatatccgatggaagctactactta 3427795  T

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Target: chr5 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 400 - 542
Target Start/End: Complemental strand, 9211606 - 9211459
Alignment:
Q  400 taagtcccacatcggaagatttgtagtgaataatgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgt--- 496  Q
    |||||||||||||||||| ||| ||||||||  | ||||||||||||||||||| |||| ||||||| |||||| |||||||||||||||| || ||       
T  9211606 taagtcccacatcggaagttttatagtgaatgttatggagcatgagttataaaacagaattgtgtgatacattgtaacatacttacctggatggggtcaa 9211507  T
Q  497 --tgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 542  Q
       ||||||| |||||||||| | ||||||  ||||||| ||||||||    
T  9211506 tgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcac 9211459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 400 - 542
Target Start/End: Original strand, 9369879 - 9370026
Alignment:
Q  400 taagtcccacatcggaagatttgtagtgaataatgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgt--- 496  Q
    |||||||||||||||||| ||| ||||||||  | ||||||||||||||||||| |||| |||||||  |||||||||||||||||||||| || ||       
T  9369879 taagtcccacatcggaagttttatagtgaatgttatggagcatgagttataaaagagaattgtgtgattcattgcaacatacttacctggatggggtcaa 9369978  T
Q  497 --tgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 542  Q
       |||||||| ||||||||| | ||||||  ||||||| ||||||||    
T  9369979 tgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcac 9370026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 581
Target Start/End: Complemental strand, 19242436 - 19242401
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcag 581  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19242436 cccaagtggtggagcctacatcataatttgttgcag 19242401  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 9211431 - 9211389
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  9211431 cccaagtggtggagcctacatcataatttgttgctgtgggggc 9211389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 546 - 579
Target Start/End: Original strand, 12560227 - 12560260
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgc 579  Q
    ||||||||||||||| ||||||||||||||||||    
T  12560227 cccaagtggtggagcctacatcataatttgttgc 12560260  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 581
Target Start/End: Complemental strand, 20798815 - 20798780
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcag 581  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20798815 cccaagtggtggagcctacatcataatttgttgcag 20798780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Original strand, 9450789 - 9450831
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  9450789 cccaagtggtggagcctacatcataatttgttgctgtgggggc 9450831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Original strand, 17724638 - 17724680
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  17724638 cccaagtggtggagcctacatcataatttgttgctgtgggggc 17724680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Original strand, 19025867 - 19025909
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  19025867 cccaagtggtggagcctacatcataatttgttgctgtgggggc 19025909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Original strand, 26640805 - 26640847
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||| | ||||||||||||||||||||| |||||    
T  26640805 cccaagtggtggaacctacatcataatttgttgcagtgggggc 26640847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 28838443 - 28838401
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  28838443 cccaagtggtggagcctacatcataatttgttgctgtgggggc 28838401  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Complemental strand, 19545466 - 19545424
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  19545466 cccaagtggtggagcctacatcataatttgttgctgtgggggc 19545424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Original strand, 1466862 - 1466904
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  1466862 cccaagtggtggagcctacatcataatttgttgctgtgggggc 1466904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 588
Target Start/End: Original strand, 35923325 - 35923367
Alignment:
Q  546 cccaagtggtggagcttacatcataatttgttgcagtaggggc 588  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  35923325 cccaagtggtggagcctacatcataatttgttgctgtgggggc 35923367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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