View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_low_46 (Length: 283)
Name: NF8959_low_46
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_46 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 492058 - 491968
Alignment:
| Q |
189 |
agaaatattagtttgtgtttaagccaattgagcacatctggatcagaaaaaactcaacagtgatgaagcctagagagagcatgtcaaagattctt |
283 |
Q |
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| T |
492058 |
agaaatgttagtttgtgtttaagccaattgagcacatctggatcagaaaaaactcaacagtgatgaagcct----agagcatgtcaaagattctt |
491968 |
T |
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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 492158 - 492087
Alignment:
| Q |
129 |
catgtagaaaataaaatgacgaaagttgatgcatatatgattagaagagttccatggaccagaaatattagt |
200 |
Q |
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| T |
492158 |
catgtagaaaataacatgacgaaagttgatgcatatatgattagaagagttccatggaccagaaatattagt |
492087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 492819 - 492784
Alignment:
| Q |
96 |
cttgattcaaggggaacaaccacgaaggaaatacat |
131 |
Q |
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| T |
492819 |
cttgattcaaggggaacaaccacgaaggaaatacat |
492784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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