View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_low_55 (Length: 234)
Name: NF8959_low_55
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_55 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 135285 - 135052
Alignment:
| Q |
1 |
aagaattactaaaaacttgaatagtcaaagaggagtcacattcaagtcaaagatttcctcaacctctcctagaaacaaattatatgacacatataacacc |
100 |
Q |
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| T |
135285 |
aagaattactaaaaacttgaatagtcaaagaggagtcacattcaagtcaaagatttcctcaacctctcctagaaacaaattatatgacacatataacacc |
135186 |
T |
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| Q |
101 |
ttcaattttagctggaaaagcgttagcgattctcaatgacttagaaccctcaaataattttacaccaacatcatttatgttttatcatttcaccaaaggt |
200 |
Q |
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| T |
135185 |
ttcaattttagctggaaaagcgttagcgattcccaatgacttagaaccctcaaataattttacaccaacatcatttatgttttatcatttcaccaaacgt |
135086 |
T |
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| Q |
201 |
agtaagctgctaaagttaagagtatcatcaattt |
234 |
Q |
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| T |
135085 |
agtaagctgctaaagttaagagtatcatcaattt |
135052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 131958 - 131868
Alignment:
| Q |
143 |
agaaccctcaaataattttacaccaacatcatttatgttttatcatttcaccaaaggtagtaagctgctaaagttaagagtatcatcaatt |
233 |
Q |
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| T |
131958 |
agaacccttaaacaagtttacaccaacatcacttatctttcatcgtttctccaaaggtagtaagttaataaagctaagagtatcctcaatt |
131868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 18850662 - 18850625
Alignment:
| Q |
188 |
tttcaccaaaggtagtaagctgctaaagttaagagtat |
225 |
Q |
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| T |
18850662 |
tttctccaaaggtagtaaactgctaaagttaagagtat |
18850625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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