View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8959_low_61 (Length: 226)
Name: NF8959_low_61
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8959_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41306931 - 41307153
Alignment:
| Q |
1 |
catgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtcac |
100 |
Q |
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| T |
41306931 |
catgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtaac |
41307030 |
T |
|
| Q |
101 |
agttaatggagttggaattgctcttgagttatcctatgttcttatatacttctggtattcttcgcctaaaggaaaggtaattaattaaagcatcatcaac |
200 |
Q |
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| T |
41307031 |
cgttaatggagttggaattgctcttgagttatcctatgttcttatatacttctggtattcttcgcctaaaggaaaggtaattaattaaagcatcatcaac |
41307130 |
T |
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| Q |
201 |
atgaagttttcattacattattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41307131 |
atgaagttttcattacattattt |
41307153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 41297069 - 41297256
Alignment:
| Q |
1 |
catgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41297069 |
catgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtcac |
41297168 |
T |
|
| Q |
101 |
agttaatggagttggaattgctcttgagttatcctatgttcttatatacttctggtattcttcgcctaaaggaaaggtaattaattaa |
188 |
Q |
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| T |
41297169 |
agttaatggagttggaattgctcttgagttatcttatgttctcatttatttctggtattcttcgcccaaaggaaaggtaattagttaa |
41297256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 9612223 - 9612036
Alignment:
| Q |
1 |
catgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtcac |
100 |
Q |
| |
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|||| |||||||||| || ||| | ||||| ||||| |||||||| |||||||| || ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
9612223 |
catgtattccttacactataggactattgaactgtctccttttcacttggtatggattgcctattgtaagtaacaagtgggaaaattttcctcttgtcac |
9612124 |
T |
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| Q |
101 |
agttaatggagttggaattgctcttgagttatcctatgttcttatatacttctggtattcttcgcctaaaggaaaggtaattaattaa |
188 |
Q |
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||||||||||||||||||| | | ||| || | |||||||| || || || ||||||||||| | ||||||||||||| ||||||| |
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| T |
9612123 |
tgttaatggagttggaattgttttggagctagcttatgttctcatttatttttggtattcttcatccaaaggaaaggtaagtaattaa |
9612036 |
T |
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