View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8959_low_7 (Length: 608)

Name: NF8959_low_7
Description: NF8959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8959_low_7
NF8959_low_7
[»] chr8 (3 HSPs)
chr8 (372-590)||(3426828-3427049)
chr8 (21-227)||(3427967-3428173)
chr8 (226-375)||(3427795-3427944)
[»] chr5 (8 HSPs)
chr5 (83-225)||(9211459-9211606)
chr5 (83-225)||(9369879-9370026)
chr5 (229-264)||(19242401-19242436)
chr5 (229-271)||(9211389-9211431)
chr5 (229-262)||(12560227-12560260)
chr5 (231-263)||(12556985-12557017)
chr5 (181-225)||(12560154-12560198)
chr5 (181-225)||(19242464-19242508)
[»] chr3 (7 HSPs)
chr3 (229-264)||(20798780-20798815)
chr3 (229-271)||(9450789-9450831)
chr3 (229-271)||(17724638-17724680)
chr3 (229-271)||(19025867-19025909)
chr3 (229-271)||(26640805-26640847)
chr3 (229-271)||(28838401-28838443)
chr3 (229-261)||(28830446-28830478)
[»] chr7 (1 HSPs)
chr7 (229-271)||(19545424-19545466)
[»] chr1 (2 HSPs)
chr1 (229-271)||(1466862-1466904)
chr1 (229-271)||(35923325-35923367)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 372 - 590
Target Start/End: Complemental strand, 3427049 - 3426828
Alignment:
Q  372 cttactaatctgtaatatagtgtaataggaagaaggtattaatgttgaatgtacgcgatataagttttggtgtctactacagaaaattaggctgtcaatt 471  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3427049 cttactaatttgtaatatagtgtaataggaagaaggtattaatgttgaatgtacgcgatataaattttggtgtctactacagaaaattaggctgtcaatt 3426950  T
Q  472 tctagagtttaaataaactca-tttgtctacgtg--atcaacttgtaaactcgacttatggattctcacaagtttatttcatattaaaataatatatatg 568  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3426949 tctagagtttaaataaactcattttgtctacgtgaaatcaacttgtaaactcgacttatggattctcacaagtttatttcatattaaaataatatatatg 3426850  T
Q  569 agacatacttatataatacaat 590  Q
    ||||||||||||||||||||||    
T  3426849 agacatacttatataatacaat 3426828  T

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Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 3428173 - 3427967
Alignment:
Q  21 gcaaatgtgtgagctagggtatgaactgctgacacttgaatggtgtttagaatgtcataatataagtcccacatcggaagatttgtagtgaataatgtgg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  3428173 gcaaatgtgtgagctagggtatgaactgctgacacttgaatggtgtttagaatgtaataataaaagtcccacatcggaagatttatagtgaataatgtgg 3428074  T
Q  121 agcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgttgtgatcaagaaggcccatcgtctaggcgtgtgacctccat 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3428073 agcatgagttataaaatagaagtgtgtgacacattgcagcatacttacctggcaggtgttgtgatcaagaaggcccatcgtctaggcgtgtgacctccat 3427974  T
Q  221 tgcacct 227  Q
    |||||||    
T  3427973 tgcacct 3427967  T

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Target: chr8; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 3427944 - 3427795
Alignment:
Q  226 ctgcccaagtggtggagcttacatcataatttgttgcagtaggggcatgctaatatactgtgctcatcttctccttttgatgcaattgttgaaggttgaa 325  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3427944 ctgcccaagtggtggagtttacatcgtaatttgttgcagtaggggcatgctaatatattgtgctcatcttctccttttgatgcaattgttgaaggttgaa 3427845  T
Q  326 atttgcgggctgattaggttgggtaaatatccgatggaagctactactta 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3427844 atttgcgggctgattaggttgggtaaatatccgatggaagctactactta 3427795  T

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Target: chr5 (Bit Score: 56; Significance: 7e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 83 - 225
Target Start/End: Complemental strand, 9211606 - 9211459
Alignment:
Q  83 taagtcccacatcggaagatttgtagtgaataatgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgt--- 179  Q
    |||||||||||||||||| ||| ||||||||  | ||||||||||||||||||| |||| ||||||| |||||| |||||||||||||||| || ||       
T  9211606 taagtcccacatcggaagttttatagtgaatgttatggagcatgagttataaaacagaattgtgtgatacattgtaacatacttacctggatggggtcaa 9211507  T
Q  180 --tgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 225  Q
       ||||||| |||||||||| | ||||||  ||||||| ||||||||    
T  9211506 tgggtgatcaggaaggcccatggcctaggcaagtgaccttcattgcac 9211459  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 9369879 - 9370026
Alignment:
Q  83 taagtcccacatcggaagatttgtagtgaataatgtggagcatgagttataaaatagaagtgtgtgacacattgcaacatacttacctggaaggtgt--- 179  Q
    |||||||||||||||||| ||| ||||||||  | ||||||||||||||||||| |||| |||||||  |||||||||||||||||||||| || ||       
T  9369879 taagtcccacatcggaagttttatagtgaatgttatggagcatgagttataaaagagaattgtgtgattcattgcaacatacttacctggatggggtcaa 9369978  T
Q  180 --tgtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 225  Q
       |||||||| ||||||||| | ||||||  ||||||| ||||||||    
T  9369979 tgggtgatcaaaaaggcccatggcctaggcaagtgaccttcattgcac 9370026  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 19242436 - 19242401
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcag 264  Q
    ||||||||||||||| ||||||||||||||||||||    
T  19242436 cccaagtggtggagcctacatcataatttgttgcag 19242401  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 9211431 - 9211389
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  9211431 cccaagtggtggagcctacatcataatttgttgctgtgggggc 9211389  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 12560227 - 12560260
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgc 262  Q
    ||||||||||||||| ||||||||||||||||||    
T  12560227 cccaagtggtggagcctacatcataatttgttgc 12560260  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 12556985 - 12557017
Alignment:
Q  231 caagtggtggagcttacatcataatttgttgca 263  Q
    ||||||||||||| |||||||||||||||||||    
T  12556985 caagtggtggagcctacatcataatttgttgca 12557017  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 12560154 - 12560198
Alignment:
Q  181 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 225  Q
    |||||||||||||||||| | ||||||  ||||||||||||||||    
T  12560154 gtgatcaagaaggcccatggcctaggcaagtgacctccattgcac 12560198  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 19242508 - 19242464
Alignment:
Q  181 gtgatcaagaaggcccatcgtctaggcgtgtgacctccattgcac 225  Q
    |||||||||||||||||| | ||||||  ||||||||||||||||    
T  19242508 gtgatcaagaaggcccatggcctaggcaagtgacctccattgcac 19242464  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 20798815 - 20798780
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcag 264  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20798815 cccaagtggtggagcctacatcataatttgttgcag 20798780  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 9450789 - 9450831
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  9450789 cccaagtggtggagcctacatcataatttgttgctgtgggggc 9450831  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 17724638 - 17724680
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  17724638 cccaagtggtggagcctacatcataatttgttgctgtgggggc 17724680  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 19025867 - 19025909
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  19025867 cccaagtggtggagcctacatcataatttgttgctgtgggggc 19025909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 26640805 - 26640847
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||| | ||||||||||||||||||||| |||||    
T  26640805 cccaagtggtggaacctacatcataatttgttgcagtgggggc 26640847  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 28838443 - 28838401
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  28838443 cccaagtggtggagcctacatcataatttgttgctgtgggggc 28838401  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 28830478 - 28830446
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttg 261  Q
    ||||||||||||||| |||||||||||||||||    
T  28830478 cccaagtggtggagcctacatcataatttgttg 28830446  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 19545466 - 19545424
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  19545466 cccaagtggtggagcctacatcataatttgttgctgtgggggc 19545424  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 1466862 - 1466904
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  1466862 cccaagtggtggagcctacatcataatttgttgctgtgggggc 1466904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 35923325 - 35923367
Alignment:
Q  229 cccaagtggtggagcttacatcataatttgttgcagtaggggc 271  Q
    ||||||||||||||| |||||||||||||||||| || |||||    
T  35923325 cccaagtggtggagcctacatcataatttgttgctgtgggggc 35923367  T

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