View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8960_high_4 (Length: 277)
Name: NF8960_high_4
Description: NF8960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8960_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 39305250 - 39305484
Alignment:
| Q |
30 |
agtgaatatgcacaacaagtccaaattcaatcatatgccaatattcaaacagaatcactaaacgtacttatgatggccaatgactcatgagaggattctg |
129 |
Q |
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| T |
39305250 |
agtgaatatgcacaacaagtctaaattcaatcatatgccaatattcaaacagaatcactcaacgtacttatgatggccaatgactcatgagaggattctg |
39305349 |
T |
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| Q |
130 |
gtttgttaattaagttacaccttttaaagaggcaaaattgatttcagaggcgcataattaattaattttgacgtgctaagagaatgcttagannnnnnnn |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
39305350 |
gtttgttaattaagttacaccttttaaagaggcaaaattgatttcagaggcgca----taattaattttgacgtgcttagagaatgcttagatttttttt |
39305445 |
T |
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| Q |
230 |
ngagagacagagaatgcttagatattctctaatagaatt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
39305446 |
tgagagacagagaatgcttagatattctctaatagaatt |
39305484 |
T |
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