View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8960_low_1 (Length: 1258)

Name: NF8960_low_1
Description: NF8960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8960_low_1
NF8960_low_1
[»] chr3 (5 HSPs)
chr3 (869-1238)||(28884852-28885206)
chr3 (140-263)||(53112766-53112889)
chr3 (835-887)||(28884803-28884855)
chr3 (846-887)||(41766003-41766044)
chr3 (883-937)||(41766055-41766109)
[»] chr8 (5 HSPs)
chr8 (844-1240)||(43038641-43039064)
chr8 (546-796)||(15739818-15740067)
chr8 (167-263)||(10216566-10216662)
chr8 (869-1054)||(12844932-12845114)
chr8 (846-887)||(29635269-29635310)
[»] scaffold0014 (1 HSPs)
scaffold0014 (546-796)||(17955-18203)
[»] chr4 (10 HSPs)
chr4 (162-450)||(10797573-10797871)
chr4 (546-793)||(10802439-10802685)
chr4 (546-796)||(10994900-10995149)
chr4 (689-796)||(51272076-51272183)
chr4 (869-1002)||(43277740-43277874)
chr4 (869-1002)||(34841406-34841540)
chr4 (110-168)||(51271503-51271561)
chr4 (326-376)||(51271765-51271815)
chr4 (835-877)||(34841549-34841591)
chr4 (847-919)||(2747975-2748045)
[»] scaffold0029 (2 HSPs)
scaffold0029 (546-792)||(60268-60513)
scaffold0029 (162-309)||(55447-55594)
[»] chr5 (5 HSPs)
chr5 (167-376)||(15881471-15881685)
chr5 (546-793)||(15879674-15879930)
chr5 (869-937)||(35877742-35877810)
chr5 (801-832)||(15879607-15879638)
chr5 (846-887)||(30669554-30669595)
[»] chr2 (3 HSPs)
chr2 (869-990)||(10914125-10914246)
chr2 (835-887)||(20355426-20355478)
chr2 (846-877)||(10914253-10914284)
[»] chr1 (6 HSPs)
chr1 (636-796)||(7431827-7431986)
chr1 (869-1054)||(39937790-39937976)
chr1 (722-796)||(22776403-22776477)
chr1 (647-739)||(23452350-23452442)
chr1 (113-168)||(22775004-22775059)
chr1 (326-376)||(22775216-22775266)
[»] chr6 (2 HSPs)
chr6 (869-1054)||(10365923-10366114)
chr6 (846-887)||(5491652-5491693)
[»] chr7 (4 HSPs)
chr7 (547-628)||(6054157-6054238)
chr7 (694-796)||(6054304-6054406)
chr7 (844-887)||(11314839-11314882)
chr7 (835-887)||(45052504-45052556)
[»] scaffold0153 (1 HSPs)
scaffold0153 (110-168)||(35605-35663)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 869 - 1238
Target Start/End: Original strand, 28884852 - 28885206
Alignment:
Q  869 gagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagaggctgaacatgtgggccccacactttttagag 968  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28884852 gagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagaggctgaacatgtgggccccacactttttagag 28884951  T
Q  969 tcttctcacttgagggaagaaacacacgagagatgctacttattaatgtttttccaattctatcctcccactatgtcataaaagacnnnnnnnn-catga 1067  Q
    |                |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||         |||||    
T  28884952 t----------------agaaacacacgagagatgctacttattaatgttttttcaattctatcctcccactatgtcataaaagacaaaaaaaaacatga 28885035  T
Q  1068 atgaaaatggtcttatttgttatgccctggtcgctactatttcttttctctccatatagcatattgcttagaccgtgtataatagagaaaggttatgatg 1167  Q
    ||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28885036 atgaaaatggttttgttcgttatgccctgatcgctactatttcttttctctccatatagcatattgcttagaccgtgtataatagagaaaggttttgatg 28885135  T
Q  1168 tggcaataatagtattggtactgaaaaaccaaatgttgttttattatagatatttaattaatactgaaaaa 1238  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  28885136 tggcaataatagtatttgtactgaaaaacaaaatgtttttttattatagatatttaattaatactaaaaaa 28885206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 53112766 - 53112889
Alignment:
Q  140 aattacataatttcaataacaaatctcaaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatcatcattcac 239  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||    
T  53112766 aattacacaatttcaatgacaaatctcaaaatccaaccctcacaaccccaaatgaaattgattaaattactggaaacccagatcatgaatcatcatttac 53112865  T
Q  240 atcaataaaaatcgatccttttca 263  Q
    ||  ||||||||| ||| ||||||    
T  53112866 atgtataaaaatcaatctttttca 53112889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 9e-21
Query Start/End: Original strand, 835 - 887
Target Start/End: Original strand, 28884803 - 28884855
Alignment:
Q  835 ctctaacagtatgtttggtagaggagaaaaaggggagagagaggttgaagaga 887  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28884803 ctctaacagtatgtttggtagaggagaaaaaggggagagagaggttgaagaga 28884855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 846 - 887
Target Start/End: Original strand, 41766003 - 41766044
Alignment:
Q  846 tgtttggtagaggagaaaaaggggagagagaggttgaagaga 887  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  41766003 tgtttggtagaggagaaaaaggagagagagaagttgaagaga 41766044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 883 - 937
Target Start/End: Original strand, 41766055 - 41766109
Alignment:
Q  883 agagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagag 937  Q
    |||||||||| |||||||||||||||||  | ||||| ||| |||||||||||||    
T  41766055 agagaaatcctacacttctcttgtttggctgtggtgagaaagagagaagagagag 41766109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 844 - 1240
Target Start/End: Original strand, 43038641 - 43039064
Alignment:
Q  844 tatgtttggtagaggagaaaaaggggagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagaggctgaa 943  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  43038641 tatgtttggtagaggagaaaaaggggagagagaggttgaagagaaatccaacacttctcttatttgatagaggtgagaaatagagaagagagaggctgaa 43038740  T
Q  944 catgtggg-ccccacac-tttttagagtcttctcacttgagggaag--aaacacacgagagatgctacttattaatgtttttccaattctatcctcccac 1039  Q
     ||||||| |||||||| ||||||||||||||||||||||||||||  | | |||||||||||||||||||||||| |||||||||||||||||||||||    
T  43038741 tatgtgggcccccacacttttttagagtcttctcacttgagggaaggaagaaacacgagagatgctacttattaatatttttccaattctatcctcccac 43038840  T
Q  1040 tatgtcataaaagac----nnnnnnnncatgaatgaaaatggtcttatttgttatgccctggtcgctactatttcttttctctccatatagcatattgct 1135  Q
    |||||||||||||||            ||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  43038841 tatgtcataaaagacaaaaaaaaaaaacatgaatgaaaatggtcttgttcgttatgccctagtcgctattatttcttttctctccatatagcatactgct 43038940  T
Q  1136 tagaccgtgtataatagagaaaggttatgatgtggcaataatagtattgg-------------------tactgaaaaaccaaatgttgttttattatag 1216  Q
    ||||| |||||||||| ||||||||| ||  ||||||||||||||||| |                   ||| ||||||||||||||| |||||||||||    
T  43038941 tagactgtgtataataaagaaaggttctggggtggcaataatagtatttgttattgaatatttaattaataccgaaaaaccaaatgtttttttattatag 43039040  T
Q  1217 atatttaattaatactgaaaaatc 1240  Q
    ||||||||||||||||||||||||    
T  43039041 atatttaattaatactgaaaaatc 43039064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 7e-77
Query Start/End: Original strand, 546 - 796
Target Start/End: Complemental strand, 15740067 - 15739818
Alignment:
Q  546 tcaaaaagctgtcagcaatttgccacaagattgagcaatttgccaggggttgagcccctggcacgtcagcttttcagaattttttgcataaatgcaaagg 645  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||     
T  15740067 tcaaaaagctgtcagcaatttgccacaagaatgtacaatttgccaggggttgagcccctggcacgtcagcttttcagaattttctgcat-aatgcagaga 15739969  T
Q  646 ttcccttgactttaggggcttaaatttgaattcggaattcccgccgacaatttgccaggggttacggcaatttgccaggggtttgctcctggctactggt 745  Q
    |||||||||||||||||||| ||||||||||      |||||||||| ||  ||||||||||||| |||||||||||||| |||||||||||| | ||||    
T  15739968 ttcccttgactttaggggctcaaatttgaataaaactttcccgccgaaaaaatgccaggggttactgcaatttgccagggctttgctcctggcaaatggt 15739869  T
Q  746 tcagattgtaattgcaattttccaggggtttccctggcattactcctggca 796  Q
     ||| || |||||||||||| ||||||||||||||||||||||||||||||    
T  15739868 ccagtttctaattgcaatttgccaggggtttccctggcattactcctggca 15739818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 10216662 - 10216566
Alignment:
Q  167 aaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatcatcattcacatcaataaaaatcgatccttttca 263  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||||||||| ||| ||||||    
T  10216662 aaaatccaaccctcacaaccccaagtgaaattgattaaattactggaaacccagatcatgaatcatcatttacatctataaaaatcaatctttttca 10216566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 869 - 1054
Target Start/End: Original strand, 12844932 - 12845114
Alignment:
Q  869 gagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagaggctgaacatgtgggccccacactttttagag 968  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||     ||||||||||| ||| ||||||||||||    
T  12844932 gagagagaagttgaagagaaatccaacacttctcttgtttggtaggggtgagaaagagagaagagagtaa--gaacatgtggggccctcactttttagag 12845029  T
Q  969 tcttctcacttgagggaagaaacacacgagagatgctacttattaatgtttttccaattctatcctcccactatgtcataaaagac 1054  Q
    ||||| ||| || | ||||||| |  ||||||||||||||| ||  ||  |||||||||||| |||| || | ||| |||||||||    
T  12845030 tcttcccacatgtgagaagaaagaggcgagagatgctacttgttgttg-ctttccaattctaccctctcattgtgttataaaagac 12845114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 846 - 887
Target Start/End: Original strand, 29635269 - 29635310
Alignment:
Q  846 tgtttggtagaggagaaaaaggggagagagaggttgaagaga 887  Q
    |||||||||||||||||||| | |||||||| ||||||||||    
T  29635269 tgtttggtagaggagaaaaaagagagagagaagttgaagaga 29635310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 175; Significance: 1e-93; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 546 - 796
Target Start/End: Complemental strand, 18203 - 17955
Alignment:
Q  546 tcaaaaagctgtcagcaatttgccacaagattgagcaatttgccaggggttgagcccctggcacgtcagcttttcagaattttttgcataaatgcaaagg 645  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||| |||| ||     
T  18203 tcaaaaagctgtcagcaatttgccacaagattttgcaatttgtcaggg-ttgagcccctggcatgtcagcttttcagaattttctgcataa-tgcagaga 18106  T
Q  646 ttcccttgactttaggggcttaaatttgaattcggaattcccgccgacaatttgccaggggttacggcaatttgccaggggtttgctcctggctactggt 745  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||    
T  18105 ttcccttgactttaggggattaaatttgaattcggatttcccgccgaaaatttgtcatgggttactgcaatttgccaggggtttgctcctggctactggt 18006  T
Q  746 tcagattgtaattgcaattttccaggggtttccctggcattactcctggca 796  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  18005 tcagattgtaattgcaatttgtcaggggtttccctggcattactcctggca 17955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 3e-88; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 162 - 450
Target Start/End: Original strand, 10797573 - 10797871
Alignment:
Q  162 atctcaaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatcatcattcacatcaataaaaatcgatcctttt 261  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10797573 atctcaaaatccaaccctcgcaaccccaaatgaaattgattaaattactggaaacccatatcatgaatcatcatttacatcaataaaaatcgatcctttt 10797672  T
Q  262 catcatttacatcaataaaaatcgcattacagggagatttatagaagagatttcgaaaatagataaagatttatagaagagagaaaacatggaatcaaga 361  Q
    |||||||||||| |||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||||     
T  10797673 catcatttacattaataaaaatcgcattaaagggagatttgtagaaaagatttcgaaaatagagaaagatttatagaagagagaaaacatgagatcaagg 10797772  T
Q  362 agttacaaacctgat-------tgagaaggattacagtgaaggaatgaaggaaggaagg-cggcggcggcggc--tgttcttgagagattgagaagagg 450  Q
    ||||||| |||| ||        | |  || |||||||||||||| |||||||||||||  ||||||||||||  | ||||||||||||||| ||||||    
T  10797773 agttacataccttatgaacggcggcggcggtttacagtgaaggaaggaaggaaggaaggaaggcggcggcggcggttttcttgagagattgaaaagagg 10797871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 3e-70
Query Start/End: Original strand, 546 - 793
Target Start/End: Original strand, 10802439 - 10802685
Alignment:
Q  546 tcaaaaagctgtcagcaatttgccacaagattgagcaatttgccaggggttgagcccctggcacgtcagcttttcagaattttttgcataaatgcaaagg 645  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||| |||||  ||||| ||     
T  10802439 tcaaaaagctgtcagcaatttgccacaagattgtgcaatttgccaggggttgagcccctggcatttcagcttttcagaattttctgcat-gatgcagaga 10802537  T
Q  646 ttcccttgactttaggggcttaaatttgaattcggaattcccgccgacaatttgccaggggttacggcaatttgccaggggtttgctcctggctactggt 745  Q
    |||||||||||||||||||| ||||||||||    | |||||||| | ||||||| |||||||||  |||||||||| || |||||||||||| | ||||    
T  10802538 ttcccttgactttaggggctcaaatttgaatcaaaatttcccgcctaaaatttgctaggggttactacaatttgccacggctttgctcctggcaaatggt 10802637  T
Q  746 tcagattgtaattgcaattttccaggggtttccctggcattactcctg 793  Q
    |||| ||||||||||||||| ||||| || ||||||||||||||||||    
T  10802638 tcagtttgtaattgcaatttgccaggagtgtccctggcattactcctg 10802685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 1e-69
Query Start/End: Original strand, 546 - 796
Target Start/End: Complemental strand, 10995149 - 10994900
Alignment:
Q  546 tcaaaaagctgtcagcaatttgccacaagattgagcaatttgccaggggttgagcccctggcacgtcagcttttcagaattttttgcataaatgcaaagg 645  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||  || || ||     
T  10995149 tcaaaaagttgtcagcaatttgccacaagattgtgcaatttgccaggggttgagcccctggcatgtcagcttttcggaattttctgcat-gatacagaga 10995051  T
Q  646 ttcccttgactttaggggcttaaatttgaattcggaattcccgccgacaatttgccaggggttacggcaatttgccaggggtttgctcctggctactggt 745  Q
    |||||||||||||||||||| ||||||||||    | |||||||| | |||| |||||||||||| |||| |||||||||||||||||||||| | ||||    
T  10995050 ttcccttgactttaggggctcaaatttgaatcaaaatttcccgcctaaaattggccaggggttactgcaacttgccaggggtttgctcctggcaaatggt 10994951  T
Q  746 tcagattgtaattgcaattttccaggggtttccctggcattactcctggca 796  Q
    |||| ||||||||||||||| |||  ||||||||||| |||||||||||||    
T  10994950 tcagtttgtaattgcaatttgccaaaggtttccctggtattactcctggca 10994900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 689 - 796
Target Start/End: Original strand, 51272076 - 51272183
Alignment:
Q  689 ccgacaatttgccaggggttacggcaatttgccaggggtttgctcctggctactggttcagattgtaattgcaattttcca-ggggtttccctggcatta 787  Q
    |||| |||||||||||| |||| ||||||||||||||||||||||||||| | |||||||  ||||||||||||||| ||| |||| ||||||||| |||    
T  51272076 ccgaaaatttgccaggg-ttactgcaatttgccaggggtttgctcctggcaaatggttcaatttgtaattgcaatttaccagggggcttccctggcgtta 51272174  T
Q  788 ctcctggca 796  Q
    |||||||||    
T  51272175 ctcctggca 51272183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 869 - 1002
Target Start/End: Complemental strand, 43277874 - 43277740
Alignment:
Q  869 gagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagaggctgaacatgtggg-ccccacactttttaga 967  Q
    |||||||| ||||||||||||| | ||| |||||||||||||||||||| | |||  | ||||||||||   |||| |||||| ||||||||||||||||    
T  43277874 gagagagaagttgaagagaaataccacatttctcttgtttggtagaggttagaaagtgggaagagagagttagaacctgtgggcccccacactttttaga 43277775  T
Q  968 gtcttctcacttgagggaagaaacacacgagagat 1002  Q
    |||| | ||||| || ||||||||||  |||||||    
T  43277774 gtctccccacttcagtgaagaaacacgagagagat 43277740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 869 - 1002
Target Start/End: Complemental strand, 34841540 - 34841406
Alignment:
Q  869 gagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagaggctgaacatgtggg-ccccacactttttaga 967  Q
    |||||||| ||||||||||||| | ||| |||||||||||||||||||| | |||  | ||||||||||   |||  |||||| ||||||||||||||||    
T  34841540 gagagagaagttgaagagaaataccacatttctcttgtttggtagaggttagaaagtgggaagagagagttagaaactgtgggcccccacactttttaga 34841441  T
Q  968 gtcttctcacttgagggaagaaacacacgagagat 1002  Q
    |||| | ||| | || ||||||||||  |||||||    
T  34841440 gtctccccacatcagtgaagaaacacgagagagat 34841406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 51271503 - 51271561
Alignment:
Q  110 acagcaacatcaacagaacttgtattcatcaattacataatttcaataacaaatctcaa 168  Q
    ||||||||| ||||| |||||||||||| |||||||| ||||||||||| |||||||||    
T  51271503 acagcaacaacaacaaaacttgtattcaacaattacacaatttcaataagaaatctcaa 51271561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 51271765 - 51271815
Alignment:
Q  326 aaagatttatagaagagagaaaacatggaatcaagaagttacaaacctgat 376  Q
    ||||||||||||| |||||||||||||  |||||||| |||||||||||||    
T  51271765 aaagatttatagacgagagaaaacatgagatcaagaatttacaaacctgat 51271815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 835 - 877
Target Start/End: Complemental strand, 34841591 - 34841549
Alignment:
Q  835 ctctaacagtatgtttggtagaggagaaaaaggggagagagag 877  Q
    ||||||| || |||||||||||||||||||||| |||||||||    
T  34841591 ctctaacggtctgtttggtagaggagaaaaaggagagagagag 34841549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 847 - 919
Target Start/End: Original strand, 2747975 - 2748045
Alignment:
Q  847 gtttggtagaggagaaaaaggggagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtga 919  Q
    |||||||||||| |||||||  ||||||||  | | || ||| |||||||||||||||||||||| |||||||    
T  2747975 gtttggtagaggtgaaaaagaagagagaga--taggagggaagtccaacacttctcttgtttggttgaggtga 2748045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 546 - 792
Target Start/End: Original strand, 60268 - 60513
Alignment:
Q  546 tcaaaaagctgtcagcaatttgccacaagattgagcaatttgccaggggttgagcccctggcacgtcagcttttcagaattttttgcataaatgcaaagg 645  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||     
T  60268 tcaaaaagctgtcagcaatttgccacaagaatgtgcaatttgccaggggttgagcccctggcacgtcagcttttcagaattttctgcat-aatgcagaga 60366  T
Q  646 ttcccttgactttaggggcttaaatttgaattcggaa--ttcccgccgacaatttgccaggggttacggcaatttgccaggggtttgctcctggctactg 743  Q
    |||||||||||||||||||| ||||||||||  ||||  |||| ||||| ||  ||||||||||||| ||||||||| ||||  ||||||||||  | |     
T  60367 ttcccttgactttaggggctcaaatttgaat--ggaactttccagccgaaaagatgccaggggttactgcaatttgcaagggccttgctcctggaaaatt 60464  T
Q  744 gttcagattgtaattgcaattttccaggggtttccctggcattactcct 792  Q
    || ||| || |||||||||||| ||||||||||||||||||||||||||    
T  60465 gtccagtttctaattgcaatttgccaggggtttccctggcattactcct 60513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 162 - 309
Target Start/End: Original strand, 55447 - 55594
Alignment:
Q  162 atctcaaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatcatcattcacatcaataaaaatcgatcctttt 261  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55447 atctcaaaatccaactctcacaaccccaaatgaaattgattaaattactggaaacccatatcatgaatcatcatttacatcaataaaaatcgatcctttt 55546  T
Q  262 catcatttacatcaataaaaatcgcattacagggagatttatagaaga 309  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  55547 catcatttacatcaataaaaatcgcattaaagggagatttaaagaaga 55594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 2e-58; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 167 - 376
Target Start/End: Complemental strand, 15881685 - 15881471
Alignment:
Q  167 aaaatccaaccctcacaaccccaaatgaaattgattaaattacttgaaacccatatcatgaatcatcattcacatcaataaaaatcgatccttttcatc- 265  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||| |     
T  15881685 aaaatccaaccctcacaaccccaaatgaaattgattaaattactggaaacccagatcatgaatcatcatttacatcaataaaaatcgatcattttcaaca 15881586  T
Q  266 ---atttacatcaataaa--aatcgcattacagggagatttatagaagagatttcgaaaatagataaagatttatagaagagagaaaacatggaatcaag 360  Q
       ||  |||   || ||  || ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||    
T  15881585 aatataaacagggatgaatcaaccgcatta-agggagatttatagaagagatttcgaaaatagagaaaaatttatagaagagagaaaacatgagatcaag 15881487  T
Q  361 aagttacaaacctgat 376  Q
    ||||||||||||||||    
T  15881486 aagttacaaacctgat 15881471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 546 - 793
Target Start/End: Complemental strand, 15879930 - 15879674
Alignment:
Q  546 tcaaaaagctgtcagcaatttgccacaagattgagcaatttgccaggggttgagcccctggcacgtcagcttttcagaatt----------ttttgcata 635  Q
    |||||||||||||||||||||||||| |||||  ||| ||||||||||||||||||||||||| |||||||||||||||||          || | |||     
T  15879930 tcaaaaagctgtcagcaatttgccacgagattatgcattttgccaggggttgagcccctggcatgtcagcttttcagaattttgtcaaatcttcttcat- 15879832  T
Q  636 aatgcaaaggttcccttgactttaggggcttaaatttgaattcggaattcccgccgacaatttgccaggggttacggcaatttgccaggggtttgctcct 735  Q
    |||||| || ||||||||| |||||||||| ||||||||||    | || | ||| | ||||| ||||| ||||| ||| ||||||||||||||||||||    
T  15879831 aatgcagagattcccttgattttaggggctcaaatttgaatcaaaattttctgcctaaaattttccaggagttactgcactttgccaggggtttgctcct 15879732  T
Q  736 ggctactggttcagattgtaattgcaattttccaggggtttccctggcattactcctg 793  Q
    |||   ||||  || ||||||||||||||| |||||||||||||||||||||||||||    
T  15879731 ggcatatggtgtagtttgtaattgcaatttgccaggggtttccctggcattactcctg 15879674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 869 - 937
Target Start/End: Complemental strand, 35877810 - 35877742
Alignment:
Q  869 gagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagag 937  Q
    ||||||||| |  ||||||| |||||||||||||||||||||| | ||||| ||| || ||||||||||    
T  35877810 gagagagagataaaagagaagtccaacacttctcttgtttggttgtggtgagaaagagggaagagagag 35877742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 801 - 832
Target Start/End: Complemental strand, 15879638 - 15879607
Alignment:
Q  801 tccctggaaaaacgcaagatttcttgtagtga 832  Q
    ||||||||||||||||||||||||||||||||    
T  15879638 tccctggaaaaacgcaagatttcttgtagtga 15879607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 846 - 887
Target Start/End: Original strand, 30669554 - 30669595
Alignment:
Q  846 tgtttggtagaggagaaaaaggggagagagaggttgaagaga 887  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    
T  30669554 tgtttcgtagaggagaaaaaggagagagagaagttgaagaga 30669595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 869 - 990
Target Start/End: Complemental strand, 10914246 - 10914125
Alignment:
Q  869 gagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagaggctgaacatgtgggccccacactttttagag 968  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||   ||||||||||| ||| ||||||||||||    
T  10914246 gagagagaagttgaagagaaatccaacacttcccttgtttggtaggggtgagaaagagagaagagagagtaagaacatgtggggccctcactttttagag 10914147  T
Q  969 tcttctcacttgagggaagaaa 990  Q
    ||||| ||| || | |||||||    
T  10914146 tcttcccacatgtgagaagaaa 10914125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 835 - 887
Target Start/End: Complemental strand, 20355478 - 20355426
Alignment:
Q  835 ctctaacagtatgtttggtagaggagaaaaaggggagagagaggttgaagaga 887  Q
    |||||||| | |||||||||||||||||||||| |||||||| ||||||||||    
T  20355478 ctctaacattgtgtttggtagaggagaaaaaggagagagagaagttgaagaga 20355426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 846 - 877
Target Start/End: Complemental strand, 10914284 - 10914253
Alignment:
Q  846 tgtttggtagaggagaaaaaggggagagagag 877  Q
    ||||||||||||||||||||||||||||||||    
T  10914284 tgtttggtagaggagaaaaaggggagagagag 10914253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 6e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 636 - 796
Target Start/End: Original strand, 7431827 - 7431986
Alignment:
Q  636 aatgcaaaggttcccttgactttaggggcttaaatttgaattcggaattcccgccgacaatttgccaggggttacggcaatttgccaggggtttgctcct 735  Q
    |||||| || |||||||||||||||||||| ||||||||||    | |||||||| | |||||||||||| |||| ||| ||||||||||||||||||||    
T  7431827 aatgcagagattcccttgactttaggggctcaaatttgaatcaaaatttcccgcctaaaatttgccaggg-ttactgcactttgccaggggtttgctcct 7431925  T
Q  736 ggctactggttcagattgtaattgcaattttccaggggtttccctggcattactcctggca 796  Q
    |||   ||||  || ||||||||||||||| ||||| ||||||||||||||| | ||||||    
T  7431926 ggcatatggtgtagtttgtaattgcaatttgccaggagtttccctggcattatttctggca 7431986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 869 - 1054
Target Start/End: Complemental strand, 39937976 - 39937790
Alignment:
Q  869 gagagagaggttgaagagaaatccaacacttctcttgtttggtagaggtgaaaaatagagaagagagaggctgaacatgtggg-ccccacactttttaga 967  Q
    ||||||||| ||||||||||||||||||| |||||| ||| | |||||| | ||| |||||||||||||   ||||||||||| |||||| ||||||| |    
T  39937976 gagagagagattgaagagaaatccaacacatctcttatttcgaagaggtaagaaagagagaagagagagttagaacatgtgggcccccaccctttttaca 39937877  T
Q  968 gtcttctcacttgagggaagaaacacacgagagatgctacttattaatgtttttccaattctatcctcccactatgtcataaaagac 1054  Q
     ||||| ||| |||| |||||||     ||||||||| |||||||| || ||||||||||||| ||||||  | |||||||||||||    
T  39937876 atcttcacacatgagcgaagaaatgggagagagatgccacttattattgcttttccaattctaccctccctttgtgtcataaaagac 39937790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 722 - 796
Target Start/End: Original strand, 22776403 - 22776477
Alignment:
Q  722 aggggtttgctcctggctactggttcagattgtaattgcaattttccaggggtttccctggcattactcctggca 796  Q
    |||||||||||||| || | |||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  22776403 aggggtttgctcctagcaaatggttcagtttgtaattgcaatttaccaggggcttccctggcgttactcctggca 22776477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 647 - 739
Target Start/End: Complemental strand, 23452442 - 23452350
Alignment:
Q  647 tcccttgactttaggggcttaaatttgaattcggaattcccgccgacaatttgccaggggttacggcaatttgccaggggtttgctcctggct 739  Q
    ||||||||||||||||||| |||||| |||    | |||||||||| ||||| ||||||||||| ||| ||||||| ||||||||||||||||    
T  23452442 tcccttgactttaggggctcaaatttaaatgtaaatttcccgccgaaaatttaccaggggttactgcactttgccaagggtttgctcctggct 23452350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 22775004 - 22775059
Alignment:
Q  113 gcaacatcaacagaacttgtattcatcaattacataatttcaataacaaatctcaa 168  Q
    |||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  22775004 gcaacaacaacagaacttgtattcagcaattacacaatttcaataagaaatctcaa 22775059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 22775216 - 22775266
Alignment:
Q  326 aaagatttatagaagagagaaaacatggaatcaagaagttacaaacctgat 376  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  22775216 aaagatttatagaagagagaaaacatgagatcaagaatttacaaacctgat 22775266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 869 - 1054
Target Start/End: Original strand, 10365923 - 10366114
Alignment:
Q  869 gagagagaggttgaagagaaatccaacacttctcttgt------ttggtagaggtgaaaaatagagaagagagaggctgaacatgtgggccccacacttt 962  Q
    |||||||| ||||||||||||||||||| |||||||||      || |||| | ||| ||| |||||||| ||||   ||||||||||||||| ||||||    
T  10365923 gagagagaagttgaagagaaatccaacatttctcttgtatagtattagtagggatgagaaagagagaagatagagttagaacatgtgggcccctcacttt 10366022  T
Q  963 ttagagtcttctcacttgagggaagaaacacacgagagatgctacttattaatgtttttccaattctatcctcccactatgtcataaaagac 1054  Q
    ||||||||||| ||| || | ||||||| | |||||||||| ||||||||  || ||||||||||||||| || || | ||| |||||||||    
T  10366023 ttagagtcttcccacatgtgagaagaaagagacgagagatgttacttattgttgcttttccaattctatcttctcattgtgttataaaagac 10366114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 846 - 887
Target Start/End: Original strand, 5491652 - 5491693
Alignment:
Q  846 tgtttggtagaggagaaaaaggggagagagaggttgaagaga 887  Q
    |||||||||||||||||||| | |||||||| ||||||||||    
T  5491652 tgtttggtagaggagaaaaaagagagagagaagttgaagaga 5491693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 5e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 547 - 628
Target Start/End: Original strand, 6054157 - 6054238
Alignment:
Q  547 caaaaagctgtcagcaatttgccacaagattgagcaatttgccaggggttgagcccctggcacgtcagcttttcagaatttt 628  Q
    ||||||| ||||||||||||||||| || ||| ||| |||||||||||||||||||||| ||  ||||||||||||||||||    
T  6054157 caaaaagttgtcagcaatttgccacgagtttgtgcattttgccaggggttgagcccctgacatttcagcttttcagaatttt 6054238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 694 - 796
Target Start/End: Original strand, 6054304 - 6054406
Alignment:
Q  694 aatttgccaggggttacggcaatttgccaggggtttgctcctggctactggttcagattgtaattgcaattttccaggggtttccctggcattactcctg 793  Q
    ||||||||| ||||||| ||||||||| |||||||||||| |||||  |||| | | ||| |||||||||||  ||||||||||||   |||||||||||    
T  6054304 aatttgccaagggttactgcaatttgcgaggggtttgctcatggcttatggtgcggtttgaaattgcaatttgtcaggggtttcccaaacattactcctg 6054403  T
Q  794 gca 796  Q
    |||    
T  6054404 gca 6054406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 844 - 887
Target Start/End: Original strand, 11314839 - 11314882
Alignment:
Q  844 tatgtttggtagaggagaaaaaggggagagagaggttgaagaga 887  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  11314839 tatgtttggtagaggagaaaaaggagagagagaagttgaagaga 11314882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 835 - 887
Target Start/End: Original strand, 45052504 - 45052556
Alignment:
Q  835 ctctaacagtatgtttggtagaggagaaaaaggggagagagaggttgaagaga 887  Q
    |||| ||| ||||||||||||| |||||||||| |||||||| ||||||||||    
T  45052504 ctcttacactatgtttggtagaagagaaaaaggagagagagaagttgaagaga 45052556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 35663 - 35605
Alignment:
Q  110 acagcaacatcaacagaacttgtattcatcaattacataatttcaataacaaatctcaa 168  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  35663 acagcaacaacaacaaaacttgtattcatcaattacacaatttcaataagaaatctcaa 35605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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