View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8960_low_11 (Length: 288)
Name: NF8960_low_11
Description: NF8960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8960_low_11 |
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| [»] scaffold0836 (1 HSPs) |
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Alignment Details
Target: scaffold0836 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 2519 - 2261
Alignment:
| Q |
1 |
catgcgaaggccttcatattgaaccttgtaccagtgtccattaacacagactttccccaccaccggctttgtgagatcaatttcaatgcaaatgcaagca |
100 |
Q |
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| T |
2519 |
catgtgaaggccttcatattgaactttgtaccagtgtccattaacacagactttccccaccaccggctttgtgagatcaatttcaacgcaaatgcgagca |
2420 |
T |
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| Q |
101 |
aaacaaactctctccaccttaagggtgtcagtatctaccttgaccggagtcccaaccgttgatgcaagggctagcaagaaactttcatcatagtatacca |
200 |
Q |
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| T |
2419 |
aaacaacctctctccaccttaagtgtgttagtatcaaccttgaccggagtcccaaccgttgatgcaagggctagcaagaaactttcatcatagtacacca |
2320 |
T |
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| Q |
201 |
agtttagacctggaaatcgtatccacaccatggtgcgttcaatctttgctagcggggag |
259 |
Q |
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| T |
2319 |
agtttagacctggaaatcgtatccacaccatggtgcgttcaatctttgctagcggggag |
2261 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 11894274 - 11894225
Alignment:
| Q |
169 |
ggctagcaagaaactttcatcatagtataccaagtttagacctggaaatc |
218 |
Q |
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| T |
11894274 |
ggctagcaagaaactctcatcatagtatactaagttcagacctgggaatc |
11894225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 20281975 - 20281926
Alignment:
| Q |
169 |
ggctagcaagaaactttcatcatagtataccaagtttagacctggaaatc |
218 |
Q |
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| T |
20281975 |
ggctagcaagaaactctcatcatagtatactaagttcagacctgggaatc |
20281926 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 23135607 - 23135655
Alignment:
| Q |
170 |
gctagcaagaaactttcatcatagtataccaagtttagacctggaaatc |
218 |
Q |
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| T |
23135607 |
gctagcaagaaactctcatcatagtatactaagttcagacctgggaatc |
23135655 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 174497 - 174421
Alignment:
| Q |
10 |
gccttcatattgaaccttgtaccagtgtccattaacacagactttccccaccaccggctttgtgagatcaatttcaa |
86 |
Q |
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| T |
174497 |
gccttcgtactgaaccttgtaccagtgaccgttcacccatattttccccaccaccgggacagtgagatcaatttcaa |
174421 |
T |
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