View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8960_low_14 (Length: 253)
Name: NF8960_low_14
Description: NF8960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8960_low_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 15245579 - 15245341
Alignment:
| Q |
15 |
tgttggtgactactctttgtgcatttacttcagcctagtatgttgctcaaacctcatttttgcgatttatcatctcccgactttcgagcataggcatggc |
114 |
Q |
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| T |
15245579 |
tgttggtgactactctttgtgcatttacttcagcctagtatgttgctcaaacctcacttttgcgatttatcatctcccaactttcgagcataggcatggc |
15245480 |
T |
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| Q |
115 |
tcactctaacacttaattattggttccaactagatgttgccatacccgcaaattcatgtgcttccataacctttagattttttactacaggaggaacttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15245479 |
tcactctaacacttaattattggttccaactagatgttgccatacccgcaaattcatgtgcttccataacctttagattttttactacaggaggaacttt |
15245380 |
T |
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| Q |
215 |
gagatgataggtataaaaaatggttcttagatgacatgt |
253 |
Q |
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| T |
15245379 |
gagatgataggtataaaaaatggttcttagatgacatgt |
15245341 |
T |
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