View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8960_low_20 (Length: 239)
Name: NF8960_low_20
Description: NF8960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8960_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3111568 - 3111790
Alignment:
| Q |
1 |
ccagcatcgtttaatttattgtttgtttgtgtaagacatgttaatcatcgcgtcagagtaggttggatgaactagagtgatcttttgagtttagcatttt |
100 |
Q |
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| T |
3111568 |
ccagcatcgtttaatttattgtttgtttgtgtaagacatgttaatcatcgcatcagagtaggttggatgaactagagtgatcttttgagtttggcatttt |
3111667 |
T |
|
| Q |
101 |
gagaaaaaagtacctctcaaacttaaagtgaagttctatcgtgtaacattgttgtatttctatgtaaaaaccaacaacaatttaagcttaaatgttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111668 |
gagaaaaaagtacctctcaaacttaaagtgaagttctatcgtgtaacattgttgtatttctatgtaaaaaccaacaacaatttaagcttaaatgttttgt |
3111767 |
T |
|
| Q |
201 |
tctgtctcttgtatagtttggtt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
3111768 |
tctgtctcttgtatagtttggtt |
3111790 |
T |
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