View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8960_low_23 (Length: 223)
Name: NF8960_low_23
Description: NF8960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8960_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 6315530 - 6315727
Alignment:
| Q |
18 |
aacttaagggttaattttataaggatgcaagccaatcaagttgctcatccgttagcaaaagtatctcatttactgctagtcacaaaattcctttgattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315530 |
aacttaagggttaattttataaggatgcaagccaatcaagttgctcatccgttagcaaaagtatctcatttactgctagtcacaaaattcctttgattat |
6315629 |
T |
|
| Q |
118 |
tgaagaaatgatatggatttgttactttaaataaacgtttatgtttgcaaggtaaccaaaatttgaaaagcgcaatgaatatccaccacctccatact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6315630 |
tgaagaaatgatatggatttgttactttaaataaacgtttatgtttgcaaggtaaccaaaatttgaaaagcgcaatgaatatccaccacttccatact |
6315727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 55322830 - 55322887
Alignment:
| Q |
26 |
ggttaattttataaggatgcaagccaatcaagttgctcatccgttagcaaaagtatct |
83 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||| | |||| |||||||||| |
|
|
| T |
55322830 |
ggttaattttataaggagacaagtcaaacaagttgctcattcattagaaaaagtatct |
55322887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University