View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8960_low_4 (Length: 595)
Name: NF8960_low_4
Description: NF8960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8960_low_4 |
 | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 33)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 577
Target Start/End: Complemental strand, 10891480 - 10890917
Alignment:
| Q |
14 |
attctcaacaaacggccaatgattatctgtagaatgtaaatctcccgaaatatcaataacttttattgaggagggccattcaagagtaggtggtgattcc |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10891480 |
attctcaacaaacggccattgattatctgtagaatgtaaatctcccgaaatatctataacttttattgaggagggccattcaagagtaggtggtgattcc |
10891381 |
T |
|
| Q |
114 |
aacagacgaggacagtgttcaactacaaatcttcctatggaagaaagatggttaggaaaatttcccctcagttcaggacaatcatataactccagagttt |
213 |
Q |
| |
|
|| | |||| |||| | | |||||||||| ||||||||||||||||||| || ||||||||||||||||||||||| | |||||||| ||||| || |
|
|
| T |
10891380 |
aaaatacgacgacaaccattatatacaaatctttctatggaagaaagatggtttggcaaatttcccctcagttcaggacagttatataacttcagagatt |
10891281 |
T |
|
| Q |
214 |
taagacaaggaaaaggaagtatgccatcttgaaagggaatccatttcttccaacttggcatattagaaaatttcaacttctcaagggatggaaatggctg |
313 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||| ||| | || ||||||||||| ||||| || || |
|
|
| T |
10891280 |
taagacaaggaaaaggaaatatgccatcttgaaagggaagccatttcttccaatttggcatgttattaaaatataaattctcaagggacggaaaaggttg |
10891181 |
T |
|
| Q |
314 |
aaatgaagaattggaacctcctccatccatgcgatagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagat |
413 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
10891180 |
aaatgaagaattggaacctcctccaacaatgtcatagaactctggaccaattgtctccaatattgacatacctcttatagttaggtccttgagagaagat |
10891081 |
T |
|
| Q |
414 |
agttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagc |
513 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
10891080 |
agtcgtcctagtggtggaagtgtcacacaatatccacaattttcaatgcacagtgacaccatgttagaaaatgaagaatctcctaaccaacatggaaagc |
10890981 |
T |
|
| Q |
514 |
ttgtcccaccatacatgtcaatgttcaatctgtttaggtttaccggaggtttcaacatatcaag |
577 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10890980 |
ttgtcccaccatacatgtcaatgttcaatctgtttaggtttaccgggggtttcaacatatcaag |
10890917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 574
Target Start/End: Complemental strand, 8863458 - 8862900
Alignment:
| Q |
16 |
tctcaacaaacggccaatgattatctgtagaatgtaaatctcccgaaatatcaataacttttattgaggagggccattcaagagtaggtggtgattccaa |
115 |
Q |
| |
|
|||||||||||||||| ||| | |||| |||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8863458 |
tctcaacaaacggccattgagtctctgaagaatgtaaatctcccgaaatatctatttcttttattgaggagagccattcaagagtaggtggtgattccaa |
8863359 |
T |
|
| Q |
116 |
cagacgaggacagtgttcaactacaaatcttcctatggaagaaagatggttaggaaaatttcccctcagttcaggacaatcatataactccagagtttta |
215 |
Q |
| |
|
|||| ||||||| ||||| ||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
8863358 |
cagatgaggacaacattcaattacaaatgcttcaatggaagaaagatggttaggcaaatttcccctcagttcaggacaatcacataacatcagagtttta |
8863259 |
T |
|
| Q |
216 |
agacaaggaaaaggaagtatgccatcttgaaagggaatccatttcttccaacttggcatattagaaaatttcaacttctcaagggatggaaatggctgaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || | ||||| ||||||||||||||||||||| || |||| |
|
|
| T |
8863258 |
agacaaggaaaaggaagtatgccatcttgaaagggaagccatttcttccaatttggcatgttcgtaaattccaacttctcaagggatggaaaaggatgaa |
8863159 |
T |
|
| Q |
316 |
atgaagaattggaacctcctccatccatgcgatagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatag |
415 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
8863158 |
atgaagaattggaacctccttcaaccatgccatagaactctggaccaattgtctccaatattgacatacctgttatctttaggtcctttagagaagatag |
8863059 |
T |
|
| Q |
416 |
ttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagctt |
515 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
8863058 |
ttgtcctagtggtggaagtgtcacacaatatccacaattttcaatgcacagtgacaccatgttagaaaatgaagaatctcccaaccaacatggaaagctt |
8862959 |
T |
|
| Q |
516 |
gtcccaccatacatgtcaatgttcaatctgtttaggtttaccggaggtttcaacatatc |
574 |
Q |
| |
|
|||||||| |||| | |||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
8862958 |
gtcccaccgtacaaggcaatgttcaatcgatttaggtttactgggggtttcaacatatc |
8862900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 577
Target Start/End: Original strand, 11157921 - 11158475
Alignment:
| Q |
20 |
aacaaacggccaatgattatctgtagaatgtaaatctcccgaaatatcaataacttttattgaggagggccattcaagagtaggtggtgattccaacaga |
119 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
11157921 |
aacaaacggccattgattatttgtagaatgtaaatctcccgaaatatctatagcttttattgagg---gccattcaagagtaggtggtgattccaaaaga |
11158017 |
T |
|
| Q |
120 |
cgaggacagtgttcaactacaaatcttcctatggaagaaagatggttaggaaaatttcccctcagttcaggacaatcatataactccagagttttaagac |
219 |
Q |
| |
|
|||||||| || | ||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
11158018 |
cgaggacaacctttatatacaaatgtttctatggaagaaagatggttaggcaaatttcccctcagttcaggacagttatataaaatcagagttttaagac |
11158117 |
T |
|
| Q |
220 |
aaggaaaaggaagtatgccatcttgaaagggaatccatttcttccaacttggcatattagaaaatttcaacttctcaagggatggaaatggctgaaatga |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| ||| ||| | || |||| |||||||||||| || |||||||| |
|
|
| T |
11158118 |
aaggaaaaggaaacatgccatcttgaaagggaagccatttcttccaatttggcatgttatcaaagtataaattcttaagggatggaaaaggttgaaatga |
11158217 |
T |
|
| Q |
320 |
agaattggaacctcctccatccatgcgatagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgt |
419 |
Q |
| |
|
||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
11158218 |
agaattggatcctcctccaacaatgccatagaactctggaccaattgtctccaatattgacatacctcttatacttaggttcttgagagcagatagttgt |
11158317 |
T |
|
| Q |
420 |
cctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcc |
519 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11158318 |
cctagtggtggaagtgttacacaatatccacaattttctatgctaagtgacaccatgttagaaaatgaagaatctcccaaccaacttggaaagcttgtcc |
11158417 |
T |
|
| Q |
520 |
caccatacatgtcaatgttcaatctgtttaggtttaccggaggtttcaacatatcaag |
577 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
11158418 |
caccatacaagtcaatgttcaatctgtttaggtttaccgggggtatcaacatatcaag |
11158475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 577
Target Start/End: Original strand, 11146751 - 11147312
Alignment:
| Q |
16 |
tctcaacaaacggccaatgattatctgtagaatgtaaatctcccgaaatatcaataacttttattgaggagggccattcaagagtaggtggtgattccaa |
115 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
11146751 |
tctcaacaaacggccattgattatttgtagaatgtaaatctccccaaatatctatagcttttattgaggagggccattcaagagtaggtggtaattcaaa |
11146850 |
T |
|
| Q |
116 |
cagacgaggacagtgttcaactacaaatcttcctatggaagaaagatggttaggaaaatttcccctcagttcaggacaatcatataactccagagtttta |
215 |
Q |
| |
|
||||||||||| | | ||||||| || |||||||||||||||| ||||| ||||||||||||||||| ||||| | |||||| ||||| |||| |
|
|
| T |
11146851 |
aagacgaggacaaccatgatatacaaatgtttctatggaagaaagatgattaggcaaatttcccctcagttcgggacagttatataaaatcagagattta |
11146950 |
T |
|
| Q |
216 |
agacaaggaaaaggaagtatgccatcttgaaagggaatccatttcttccaacttggcatattagaaaatttcaacttctcaagggatggaaatggctgaa |
315 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| || ||||| |||||||||||| |||||||| || |||| |
|
|
| T |
11146951 |
agacaaggaaaaggaaatatgccatcttgaaagggaagccatttcttccaatttggcattttcacaaattgcaacttctcaagcgatggaaaaggttgaa |
11147050 |
T |
|
| Q |
316 |
atgaagaattggaacctcctccatccatgcgatagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatag |
415 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11147051 |
atgaagaattggaacctcctccaacaatgccatagaactctggaccaattgtctccaatatatacatacctcttatacttaggtccttgagagaagatag |
11147150 |
T |
|
| Q |
416 |
ttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagctt |
515 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11147151 |
ttgtcctagtggtggaagtgtcacacaatatccacaatgttgaattgacagtgacaccatgttagaaaatgaagaatctcccaaccaacttggaaagctt |
11147250 |
T |
|
| Q |
516 |
gtcccaccatacatgtcaatgttcaatctgtttaggtttaccggaggtttcaacatatcaag |
577 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11147251 |
gtcccaccatacaagtcaatgttcaatctgtttaggtttaccgggggtttcaacatatcaag |
11147312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 577
Target Start/End: Original strand, 11128926 - 11129487
Alignment:
| Q |
16 |
tctcaacaaacggccaatgattatctgtagaatgtaaatctcccgaaatatcaataacttttattgaggagggccattcaagagtaggtggtgattccaa |
115 |
Q |
| |
|
|||||||||||||||| || | |||||||||| |||| |||||||| ||| || |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11128926 |
tctcaacaaacggccatcgagtctctgtagaatctaaacttcccgaaaaatctatttcttttattgaggagagccattcaagagtaggtggtgattccaa |
11129025 |
T |
|
| Q |
116 |
cagacgaggacagtgttcaactacaaatcttcctatggaagaaagatggttaggaaaatttcccctcagttcaggacaatcatataactccagagtttta |
215 |
Q |
| |
|
|||| ||||||| || | ||||||| | |||||||||| |||||| |||| ||||||||||||||||||| ||| |||||||||| ||||| |||| |
|
|
| T |
11129026 |
cagatgaggacaacctttatttacaaattcttctatggaagagagatggctaggcaaatttcccctcagttcagtacagtcatataacttcagagattta |
11129125 |
T |
|
| Q |
216 |
agacaaggaaaaggaagtatgccatcttgaaagggaatccatttcttccaacttggcatattagaaaatttcaacttctcaagggatggaaatggctgaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| || | ||||| ||||||||||||||| | ||| || |||| |
|
|
| T |
11129126 |
agacaaggaaaaggaagtatgccatcttgaaagagaagccatttcttccaatttggcatgttcgtaaattccaacttctcaagggacgaaaaaggttgaa |
11129225 |
T |
|
| Q |
316 |
atgaagaattggaacctcctccatccatgcgatagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatag |
415 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
11129226 |
atgaagaattggaacctcctccaacaatgccatagaactctggaccaattgtctccaatattgacatacctcttatagttaggtccttgagagaagatag |
11129325 |
T |
|
| Q |
416 |
ttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagctt |
515 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |
|
|
| T |
11129326 |
ttgtcctagtggtggaagtgtcacacaatatcgacaattttctatgcaaagtgacaccatgttagaaaatgaagaatctcccaaccaactaggaaaactt |
11129425 |
T |
|
| Q |
516 |
gtcccaccatacatgtcaatgttcaatctgtttaggtttaccggaggtttcaacatatcaag |
577 |
Q |
| |
|
||||| ||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
11129426 |
gtcccgccataaaagtaaatgttcaatctgtttaggtttaccgggggtatcaacatatcaag |
11129487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 171 - 528
Target Start/End: Original strand, 11244678 - 11245035
Alignment:
| Q |
171 |
aaatttcccctcagttcaggacaatcatataactccagagttttaagacaaggaaaaggaagtatgccatcttgaaagggaatccatttcttccaacttg |
270 |
Q |
| |
|
||||||||||||||||||||||||| | | |||| || ||||||||||| ||| ||||||| |||| ||| ||||| | | ||||| ||||||| ||| |
|
|
| T |
11244678 |
aaatttcccctcagttcaggacaattagaaaacttcatagttttaagacgagggaaaggaaatatgtgatcatgaaaagttagccattccttccaatttg |
11244777 |
T |
|
| Q |
271 |
gcatattagaaaatttcaacttctcaagggatggaaatggctgaaatgaagaattggaacctcctccatccatgcgatagaactctggaccaattgtctc |
370 |
Q |
| |
|
||| || ||| |||||||||||||| |||||||| || || ||||||||||||||| ||||| ||| | | ||||||||| | ||||||||||| |
|
|
| T |
11244778 |
acatgttctcaaacttcaacttctcaagagatggaaacggttggaatgaagaattggaagtgcctccttcccttccatagaactccaggccaattgtctc |
11244877 |
T |
|
| Q |
371 |
caatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgac |
470 |
Q |
| |
|
|||||| ||||||||| ||||||||| ||||||||| ||| ||||| |||| ||| || |||||||| |||||| || |||| |||||||| || |
|
|
| T |
11244878 |
caatatcgacatacctcctatacttagatccttgagacaaggtagtttccctactggaggtagtgtcacacaatatgcaaaattatcgatgcaaagagaa |
11244977 |
T |
|
| Q |
471 |
accatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| |||||| ||||||| ||||||| |
|
|
| T |
11244978 |
accatgttagaaaatgaagaatctcccaatcaacatggaaaacttgtcctgccataca |
11245035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 347 - 574
Target Start/End: Complemental strand, 10090631 - 10090404
Alignment:
| Q |
347 |
atagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatat |
446 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||| ||| |||||||||||||||||| || ||| |||| |||||||||||||| |||||| |
|
|
| T |
10090631 |
atagaactccggaccaattgtctccaacatgttcataccacatatttttaggtccttgagagaaggtaattgacctatgggtggaagtgtcacacaatat |
10090532 |
T |
|
| Q |
447 |
ccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccatacatgtcaatgttcaatctgt |
546 |
Q |
| |
|
||||||| || || || || || |||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||| | ||| ||||| || | |
|
|
| T |
10090531 |
tcacaattactgatacagagggataccatgttagaaaacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaagcaaatattcaagctct |
10090432 |
T |
|
| Q |
547 |
ttaggtttaccggaggtttcaacatatc |
574 |
Q |
| |
|
| || |||| ||||||| ||||||||| |
|
|
| T |
10090431 |
tcagatttattggaggttgcaacatatc |
10090404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 347 - 574
Target Start/End: Complemental strand, 10197514 - 10197287
Alignment:
| Q |
347 |
atagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatat |
446 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||| ||| |||||||||||||||||| || ||| |||| |||||||||||||| |||||| |
|
|
| T |
10197514 |
atagaactccggaccaattgtctccaacatgttcataccacatatttttaggtccttgagagaaggtaattgacctatgggtggaagtgtcacacaatat |
10197415 |
T |
|
| Q |
447 |
ccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccatacatgtcaatgttcaatctgt |
546 |
Q |
| |
|
||||||| || || || || || |||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||| | ||| ||||| || | |
|
|
| T |
10197414 |
tcacaattactgatacagagggataccatgttagaaaacgaagaatttcccaaccaactcggaaagcttgtcccaccatacaagcaaatattcaagctct |
10197315 |
T |
|
| Q |
547 |
ttaggtttaccggaggtttcaacatatc |
574 |
Q |
| |
|
| || |||| ||||||| ||||||||| |
|
|
| T |
10197314 |
tcagatttattggaggttgcaacatatc |
10197287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 347 - 520
Target Start/End: Complemental strand, 10502427 - 10502254
Alignment:
| Q |
347 |
atagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatat |
446 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||| |||||||||||| |||||||||| |||||| |||| |||||||||||||| |||||| |
|
|
| T |
10502427 |
atagaactctgggccaattttctccaatattaacatataccctatacttaggtctttgagagaaggtagttgccctaacggtggaagtgtcacacaatat |
10502328 |
T |
|
| Q |
447 |
ccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtccc |
520 |
Q |
| |
|
|||| || | ||| | || |||||||||||||| ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
10502327 |
tcacagttagtgatgttgatggataccatgttagaaaacgaagaatttcccaaccaatttggaaagcttgtccc |
10502254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 399 - 528
Target Start/End: Complemental strand, 11771023 - 11770894
Alignment:
| Q |
399 |
tccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccca |
498 |
Q |
| |
|
||||||||||||| ||| || |||| |||||||||||||| |||||| ||||||| || || | || || |||||||||||||||||| ||| ||||| |
|
|
| T |
11771023 |
tccttgagagaaggtagctgccctatgggtggaagtgtcacacaatattcacaattactaatacggagggataccatgttagaaaatgaagaatttccca |
11770924 |
T |
|
| Q |
499 |
accaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
11770923 |
gccaactcggaaagcttgtcccaccataca |
11770894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 398 - 528
Target Start/End: Complemental strand, 13172821 - 13172691
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||| || |||||| |||||||| || || | ||||||||||||||||| || ||| ||| |
|
|
| T |
13172821 |
gtccttgagagaaggtagttgacctagtgatggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaaaaaaggatcaccc |
13172722 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
13172721 |
aaccaactcggaaagcttgtcccaccataca |
13172691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 398 - 528
Target Start/End: Complemental strand, 13334697 - 13334567
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| || |||||| |||||||| || || | ||||||||||||||||| || ||| ||| |
|
|
| T |
13334697 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
13334598 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |
|
|
| T |
13334597 |
aaccaactcggaaagcttgttccaccataca |
13334567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 398 - 528
Target Start/End: Complemental strand, 13345876 - 13345746
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| || |||||| |||||||| || || | ||||||||||||||||| | ||| ||| |
|
|
| T |
13345876 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaatggatcaccc |
13345777 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
13345776 |
aaccaactcggaaagcttgtcccaccataca |
13345746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 399 - 528
Target Start/End: Original strand, 11780262 - 11780391
Alignment:
| Q |
399 |
tccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccca |
498 |
Q |
| |
|
||||||||||||| ||| || |||| |||||||||||||| |||||| ||||||| || || | || || |||||||| ||||||||| || ||||| |
|
|
| T |
11780262 |
tccttgagagaaggtagctgccctatgggtggaagtgtcacacaatattcacaattactaatacggagggataccatgtttgaaaatgaaggatttccca |
11780361 |
T |
|
| Q |
499 |
accaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11780362 |
gccaacttggaaagcttgtcccaccataca |
11780391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 398 - 528
Target Start/End: Complemental strand, 10033790 - 10033660
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| || || |||| ||||||||||||| |||||| ||||||| | |||| ||| || |||||||||||||| || ||| |||| |
|
|
| T |
10033790 |
gtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgaagagataccatgttagaaaacaaagaatttccc |
10033691 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
10033690 |
aaccaactcggaaagcttgtcccaccataca |
10033660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 426 - 528
Target Start/End: Complemental strand, 10665288 - 10665186
Alignment:
| Q |
426 |
ggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccat |
525 |
Q |
| |
|
||||||||| |||| |||||| ||||||| || || || || || |||||||||||||| ||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
10665288 |
ggtggaagtatcacacaatattcacaattactgatacagagggataccatgttagaaaacgaagaatttcccaaccaacttggaaagcttgttccaccat |
10665189 |
T |
|
| Q |
526 |
aca |
528 |
Q |
| |
|
||| |
|
|
| T |
10665188 |
aca |
10665186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 398 - 528
Target Start/End: Complemental strand, 13162773 - 13162643
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| || |||||| |||||||| || || | ||||||||||||||||| || ||| ||| |
|
|
| T |
13162773 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
13162674 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| || |||||||| |||||||||| |
|
|
| T |
13162673 |
aaccaactcgggaagcttgttccaccataca |
13162643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 395 - 528
Target Start/End: Complemental strand, 10262491 - 10262358
Alignment:
| Q |
395 |
taggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatct |
494 |
Q |
| |
|
||||||||||||||||| || || |||| ||||||||||||| |||||| ||||||| | |||| || || ||||||||| |||| ||| ||| | |
|
|
| T |
10262491 |
taggtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgcagagataccatgttataaaacgaagaattt |
10262392 |
T |
|
| Q |
495 |
cccaaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
10262391 |
cccaaccaactcggaaagcttgtcccaccataca |
10262358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 520
Target Start/End: Complemental strand, 12130291 - 12130070
Alignment:
| Q |
299 |
ggatggaaatggctgaaatgaagaattggaacctcctccatccatgcgatagaactctggaccaattgtctccaatattgacatacctgttatacttagg |
398 |
Q |
| |
|
|||||||||||| || ||||||||||| |||| ||||| ||||| ||||||||||||||| ||||||||||| || |||| | | ||| | |
|
|
| T |
12130291 |
ggatggaaatggttggaatgaagaatttgaacttcctcatgtcatgccatagaactctggaccgattgtctccaacatcctcatatcagaaataaccaaa |
12130192 |
T |
|
| Q |
399 |
tccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccca |
498 |
Q |
| |
|
||||||||||||| ||| | || |||||||||||||||| ||||||| |||||| | |||| || ||||| ||||| ||||| || ||||||||| |
|
|
| T |
12130191 |
tccttgagagaaggtagcttcccaagtggtggaagtgtcatgcaatatgaacaatttgtgatgcgaacagacacaatgttggaaaacaaagaatctccca |
12130092 |
T |
|
| Q |
499 |
accaacttggaaagcttgtccc |
520 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
12130091 |
accaacttggaaaacttgtccc |
12130070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 402 - 526
Target Start/End: Complemental strand, 13397272 - 13397148
Alignment:
| Q |
402 |
ttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaacc |
501 |
Q |
| |
|
|||||| ||| || |||||||||||| |||||||| | |||||| ||||| | ||| |||| |||||||||||||||| |||||||| ||||||| |
|
|
| T |
13397272 |
ttgagaaaaggtacttgtcctagtggaggaagtgttatgcaatactcacaagatttgatggaaaggtacaccatgttagaaaacgaacaatcccccaacc |
13397173 |
T |
|
| Q |
502 |
aacttggaaagcttgtcccaccata |
526 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
13397172 |
aacttggaaagcttatcccaccata |
13397148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 395 - 526
Target Start/End: Complemental strand, 10582403 - 10582272
Alignment:
| Q |
395 |
taggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatct |
494 |
Q |
| |
|
||||||||| ||||||| || || |||| ||||||||||||||| |||||| ||||||| | |||| || || |||||||||||||| ||| ||| | |
|
|
| T |
10582403 |
taggtccttaagagaaggtaactgccctattggtggaagtgtcacacaatattcacaattagtgatgcggagggataccatgttagaaaacgaagaattt |
10582304 |
T |
|
| Q |
495 |
cccaaccaacttggaaagcttgtcccaccata |
526 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |
|
|
| T |
10582303 |
cccaaccaactaggaaaacttgtcccgccata |
10582272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 528
Target Start/End: Complemental strand, 10128715 - 10128585
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| || || |||| ||||||||||||| |||||| ||||||| | |||| || || |||||||||||||| || ||| |||| |
|
|
| T |
10128715 |
gtccttgagagaaggtaactgccctatgggtggaagtgtcatacaatattcacaattagtgatgcgcagagataccatgttagaaaacaaagaatttccc |
10128616 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
10128615 |
aaccaactcggaaagcttgtcccaccataca |
10128585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 398 - 528
Target Start/End: Original strand, 10374124 - 10374254
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| || || ||||| | |||||||||||| |||| | ||||||| || || | || || ||||||||| |||| ||| || |||| |
|
|
| T |
10374124 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
10374223 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
10374224 |
aaccaactcggaaagcttgtcccaccataca |
10374254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 148 - 528
Target Start/End: Complemental strand, 10530690 - 10530307
Alignment:
| Q |
148 |
ctatggaagaaagatggttaggaaaatttcccctcagttcaggacaatcatataactccagagttttaagacaaggaaaaggaagtatgccatcttgaaa |
247 |
Q |
| |
|
|||||||||| || ||| ||||||||| |||||| | ||| ||||||| ||||||||| |||||||||||||| ||||||| || || ||| ||| |
|
|
| T |
10530690 |
ctatggaagataggtggctaggaaaatgtcccctaaattctggacaattatataactcaagagttttaagacatggaaaagcaaagctgtttccttcaaa |
10530591 |
T |
|
| Q |
248 |
gggaatccatttcttccaacttggcat-attagaaaatttcaacttctcaagggatggaaatggctgaaatgaagaattggaacctcctccatc---cat |
343 |
Q |
| |
|
|| | ||||| |||||| ||||||| ||| |||| || || ||||||||| |||||||| || || |||||||| |||||| |||| || | |
|
|
| T |
10530590 |
agggagccattcattccaatttggcatgatttgaaatcttatac-gctcaagggacggaaatggttggaaggaagaatttgaaccttctccttcttggac |
10530492 |
T |
|
| Q |
344 |
gcgatagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaa |
443 |
Q |
| |
|
| ||||||||||| |||||| |||||||||| |||| | ||| |||||||||| ||||||| ||| || ||||| ||||||||||||| |||| |
|
|
| T |
10530491 |
acaatagaactctgagccaattctctccaatatcttcatatcatatatttttaggtcctttagagaaggtagctgccctagcggtggaagtgtcatgcaa |
10530392 |
T |
|
| Q |
444 |
tatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
||| ||||||| |||| ||| |||||||||||| |||| || | | ||| | |||| ||||||| |||||||| ||||||| |
|
|
| T |
10530391 |
tattcacaattatcgatgcgaagagacaccatgttataaaacaaagagtttccgacccaatttggaaaacttgtcccgccataca |
10530307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 398 - 535
Target Start/End: Complemental strand, 9851529 - 9851392
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| || || ||||| | |||||||||||| |||| | ||||||| || || | || || ||||||||| |||| ||| || |||| |
|
|
| T |
9851529 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaacttccc |
9851430 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccatacatgtcaat |
535 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
9851429 |
aaccaactcggaaaacttgtcccaccatacaagtcaat |
9851392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 528
Target Start/End: Original strand, 10432320 - 10432453
Alignment:
| Q |
395 |
taggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatct |
494 |
Q |
| |
|
||||||||||||||||| || || |||| |||||||||||||| |||||| ||||||| || || || || || ||||||| ||||| ||| ||| | |
|
|
| T |
10432320 |
taggtccttgagagaaggtaactgccctaagggtggaagtgtcacacaatattcacaattactgatacagagggataccatgtccgaaaacgaagaattt |
10432419 |
T |
|
| Q |
495 |
cccaaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||| |||||| ||||||||||| ||| |||||| |
|
|
| T |
10432420 |
cccagccaactcggaaagcttgtaccatcataca |
10432453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 528
Target Start/End: Complemental strand, 10519278 - 10519145
Alignment:
| Q |
395 |
taggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatct |
494 |
Q |
| |
|
||||||||||||||||| || || ||||| | |||||||||||| |||| | ||||||| || || | || || ||||||||| |||| ||| || | |
|
|
| T |
10519278 |
taggtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaacgaagaactt |
10519179 |
T |
|
| Q |
495 |
cccaaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| |
|
|
| T |
10519178 |
cccaaccaactcggaaaacttgtcccaccataca |
10519145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 525
Target Start/End: Original strand, 10362108 - 10362207
Alignment:
| Q |
426 |
ggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccat |
525 |
Q |
| |
|
||||||||| |||| |||||| ||||||| | |||| || || |||||||||||||| ||| ||| |||||||||||| ||||| ||||||||||||| |
|
|
| T |
10362108 |
ggtggaagtatcacacaatattcacaattagtgatgcggagggataccatgttagaaaacgaagaatttcccaaccaactaggaaaacttgtcccaccat |
10362207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 398 - 535
Target Start/End: Complemental strand, 9840651 - 9840514
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| || || ||||| | |||||||||||| |||| | ||||||| || || | || || || |||||| |||| ||| || |||| |
|
|
| T |
9840651 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagatacgatgttataaaacgaagaacttccc |
9840552 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccatacatgtcaat |
535 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
9840551 |
aaccaactcggaaaacttgtcccaccatacaagtcaat |
9840514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 528
Target Start/End: Complemental strand, 10079203 - 10079070
Alignment:
| Q |
395 |
taggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatct |
494 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||||||| |||| |||||| |||||| | || || || |||| |||| |||| ||| ||| | |
|
|
| T |
10079203 |
taggtccttgagagaaggtagttgcccaagtggtggaagtatcacacaatattcacaatcagtgattacgagggataccaagttacaaaacgaagaattt |
10079104 |
T |
|
| Q |
495 |
cccaaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|| |||||||| | |||||||||||||||||||| |
|
|
| T |
10079103 |
cctaaccaactcgaaaagcttgtcccaccataca |
10079070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 528
Target Start/End: Complemental strand, 10186173 - 10186040
Alignment:
| Q |
395 |
taggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatct |
494 |
Q |
| |
|
||||||||||||||||| |||||| || |||||||||||| || | |||||| |||||| | || || ||||||| |||| |||| ||| ||| | |
|
|
| T |
10186173 |
taggtccttgagagaaggtagttgcccaagtggtggaagtatcgcacaatattcacaatcagtgattacgagggacaccaagttacaaaacgaagaattt |
10186074 |
T |
|
| Q |
495 |
cccaaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|| |||||||| | |||||||||||||||||||| |
|
|
| T |
10186073 |
cctaaccaactcgaaaagcttgtcccaccataca |
10186040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 10679481 - 10679401
Alignment:
| Q |
148 |
ctatggaagaaagatggttaggaaaatttcccctcagttcaggacaatcatataactccagagttttaagacaaggaaaag |
228 |
Q |
| |
|
|||||||||| || ||| | ||||||| || ||| ||||| ||||||| ||||||||| |||||||||||||| ||||||| |
|
|
| T |
10679481 |
ctatggaagataggtggctgggaaaatgtcgcctaagttctggacaattatataactcaagagttttaagacatggaaaag |
10679401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 528
Target Start/End: Complemental strand, 10679232 - 10679098
Alignment:
| Q |
394 |
ttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatc |
493 |
Q |
| |
|
|||||||||| ||||||| ||| || ||||| ||||||||||||| ||||||| || |||| |||| ||| |||||||||||| | || || | | |
|
|
| T |
10679232 |
ttaggtcctttagagaaggtagctgccctagcggtggaagtgtcatgcaatattcagaattatcgatgcgaagagacaccatgttatagaacaaagagtt |
10679133 |
T |
|
| Q |
494 |
tcccaaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
||| | |||| ||||||| |||||||| ||||||| |
|
|
| T |
10679132 |
tcctacccaatttggaaaacttgtcccgccataca |
10679098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 149 - 515
Target Start/End: Complemental strand, 29838679 - 29838313
Alignment:
| Q |
149 |
tatggaagaaagatggttaggaaaatttcccctcagttcaggacaatcatataactccagagttttaagacaaggaaaaggaagtatgccatcttgaaag |
248 |
Q |
| |
|
|||||||| ||||||||| || |||| ||| |||||||||| ||| | | |||| |||||||| |||||||||||||||||| |||| ||| |||| |
|
|
| T |
29838679 |
tatggaaggaagatggttgggcaaatgtcctctcagttcagaacacttctgtaacctcagagtttggagacaaggaaaaggaagtttgcctccttcaaag |
29838580 |
T |
|
| Q |
249 |
ggaatccatttcttccaacttggcatattagaaaatttcaacttctcaagggatggaaatggctgaaatgaagaattggaacctcctccatccatgcgat |
348 |
Q |
| |
|
|||| ||||| ||||||||||| ||| || ||||| || || | ||||| ||||| || | |||||||||||||||||| |||| |||||| || |
|
|
| T |
29838579 |
ggaagccattccttccaacttgacatgttcctaaattgcagattttgtagggaaggaaacggttcgaatgaagaattggaaccttctcctaccatgccat |
29838480 |
T |
|
| Q |
349 |
agaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatcc |
448 |
Q |
| |
|
|||||||||| ||||| |||| ||| || |||||| || ||||||||||||||||||||||| || ||||||| ||||||||| | ||||||| | |
|
|
| T |
29838479 |
agaactctgggccaatagtcttcaacatcctcataccatctaaccttaggtccttgagagaagatagatgccctagtgatggaagtgtaaggcaatattc |
29838380 |
T |
|
| Q |
449 |
acaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagctt |
515 |
Q |
| |
|
|||||| || |||| ||| ||||||||||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
29838379 |
acaattactgatgctaaggtacaccatgttaaagaatgaagaatctcccaaccaacttggaaagctt |
29838313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 347 - 536
Target Start/End: Complemental strand, 11486876 - 11486687
Alignment:
| Q |
347 |
atagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatat |
446 |
Q |
| |
|
|||||||||| | |||||||||||||| || ||||| ||||||| || | ||||||||| | |||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
11486876 |
atagaactcttggccaattgtctccaacatcaacatattccttatactcagtttcttgagagatggtagttgccctagcggtggaagtgtcatgcaatat |
11486777 |
T |
|
| Q |
447 |
ccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccatacatgtcaatg |
536 |
Q |
| |
|
|||||| | ||| |||| |||||||| |||||||||||| |||| ||||||||| | ||||| |||||||||||||||| ||||||| |
|
|
| T |
11486776 |
tcacaatcattgatgtaaagggacaccattttagaaaatgaagaatcacccaaccaattcggaaaacttgtcccaccatacaagtcaatg |
11486687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 399 - 535
Target Start/End: Original strand, 44955957 - 44956093
Alignment:
| Q |
399 |
tccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccca |
498 |
Q |
| |
|
||||||||| ||| ||||| || || ||||||||||| || ||||| || ||||| || |||||||| ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
44955957 |
tccttgagaaaaggcagttgccccagcggtggaagtgttacacaataccctcaattactgatgcaaagggacgccatgttagaaaacgaaaaatctccca |
44956056 |
T |
|
| Q |
499 |
accaacttggaaagcttgtcccaccatacatgtcaat |
535 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
44956057 |
accaatttggaaagcttgtcccaccatagaagtcaat |
44956093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 341 - 526
Target Start/End: Complemental strand, 827740 - 827555
Alignment:
| Q |
341 |
catgcgatagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacg |
440 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||| | | | |||| || | || |||||| |||||||||| ||||||||||||||| |||||||| || |
|
|
| T |
827740 |
catgccatagaactctgcaccaattgtttccactctagtcatatctttgatttgtaggtctttgagagaagttagttgtcctagtggaggaagtgttaca |
827641 |
T |
|
| Q |
441 |
caatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccata |
526 |
Q |
| |
|
||||| ||||| || | |||||| |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
827640 |
caatacacacaagaactgaggcaaaggtacaccatgttagaaaatgaacaatctcccaaccaacgtggaaaactcgtcccaccata |
827555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 354 - 540
Target Start/End: Complemental strand, 26908722 - 26908536
Alignment:
| Q |
354 |
tctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaat |
453 |
Q |
| |
|
||||| |||||||||||||| ||| |||||| ||| ||||||||||||| ||| |||||||||||| ||||||||||| |||| || |||||| |
|
|
| T |
26908722 |
tctgggccaattgtctccaacattttcataccatgtatttctaggtccttgagaaaaggtagttgtcctaggggtggaagtgttgggcaaaattcacaat |
26908623 |
T |
|
| Q |
454 |
tccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaaagcttgtcccaccatacatgtcaatgttca |
540 |
Q |
| |
|
| ||||| ||| |||||||| |||||||||||| | |||||||||||||| || || |||||||||||||||| |||||| |||| |
|
|
| T |
26908622 |
tagttatgtgaagggacaccatcttagaaaatgaagagtctcccaaccaactcgggaaacttgtcccaccatacaagtcaattttca |
26908536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 398 - 528
Target Start/End: Original strand, 134167 - 134297
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||||||||| || |||||| |||||||| || || | ||||||||||||||||| || ||| ||| |
|
|
| T |
134167 |
gtccttgagagaaggtagttgacctagtgatggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaaaaaaggatcaccc |
134266 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
134267 |
aaccaactcggaaagcttgtcccaccataca |
134297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 398 - 528
Target Start/End: Original strand, 144215 - 144345
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| || |||||| |||||||| || || | ||||||||||||||||| || ||| ||| |
|
|
| T |
144215 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
144314 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |
|
|
| T |
144315 |
aaccaactcggaaagcttgttccaccataca |
144345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 398 - 528
Target Start/End: Original strand, 152520 - 152650
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| || |||||| |||||||| || || | ||||||||||||||||| || ||| ||| |
|
|
| T |
152520 |
gtccttgagagaaggtagttggcctagtggtggaagtgttacacaatattcacaattcgagatacacaaggacaccatgttagaaaacaaaggatcaccc |
152619 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| || |||||||| |||||||||| |
|
|
| T |
152620 |
aaccaactcgggaagcttgttccaccataca |
152650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 577
Target Start/End: Original strand, 17851097 - 17851384
Alignment:
| Q |
293 |
ctcaagggatggaaatggctgaaatgaagaattggaacctcctccatccatgc---gatagaactctggaccaattgtctccaatattgacatacctgtt |
389 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||| |||| || | |||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
17851097 |
ctcaagggacggaaatggttgaaaggaagaattggaaccttctcctgcctggacatgatagaactctggaccgattctctccaatatctccataccacaa |
17851196 |
T |
|
| Q |
390 |
atacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaac |
489 |
Q |
| |
|
|| ||||||||| ||||||| ||| || || || ||||||||||||| ||||| | ||| ||| || |||| | |||| ||||||||||| ||| |
|
|
| T |
17851197 |
attagtaggtccttcagagaaggtagctgccccagcggtggaagtgtcatgcaatgttcaccattactgatgcccaagaacacgatgttagaaaacgaag |
17851296 |
T |
|
| Q |
490 |
aatctcccaaccaacttggaaagcttgtcccaccatacatgtcaatgttcaatctgtttaggtttaccggaggtttcaacatatcaag |
577 |
Q |
| |
|
||||||| | |||||||||||| |||||||||||||| | ||||||| | | | | || ||||| |||| |||| |||||||||||| |
|
|
| T |
17851297 |
aatctcctagccaacttggaaaacttgtcccaccataaaagtcaatgcttagtttcttcaggttaaccgatggttgcaacatatcaag |
17851384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 528
Target Start/End: Original strand, 55881 - 56011
Alignment:
| Q |
398 |
gtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaatatccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctccc |
497 |
Q |
| |
|
|||||||||||||| || || ||||| | |||||||||||| |||| | ||||||| || || | || || ||||||||| |||||||| || |||| |
|
|
| T |
55881 |
gtccttgagagaaggtaactgccctagggatggaagtgtcacacaattttcacaattactgatactgagagataccatgttataaaatgaagaacttccc |
55980 |
T |
|
| Q |
498 |
aaccaacttggaaagcttgtcccaccataca |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
55981 |
aaccaactcggaaagcttgtcccaccataca |
56011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 245 - 510
Target Start/End: Original strand, 31677862 - 31678124
Alignment:
| Q |
245 |
aaagggaatccatttcttccaacttggcatattagaaaatttcaacttctcaagggatggaaatggctgaaatgaagaattggaacctcctccatccatg |
344 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||| || ||||| ||| | || | |||||||||||| || || || ||| ||||||| ||||| ||||| |
|
|
| T |
31677862 |
aaagggaagccattccttccaatttggcatgttctgaaattccaaaatttccaaggatggaaatggttggaacgatgaactggaaccacctcctgccatg |
31677961 |
T |
|
| Q |
345 |
cgatagaactctggaccaattgtctccaatattgacatacctgttatacttaggtccttgagagaagatagttgtcctagtggtggaagtgtcacgcaat |
444 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| ||| | ||| | | |||||||||||||| ||| || |||| |||||||| || | |||| |
|
|
| T |
31677962 |
gcgtagaactctgcaccaattgtctccaatgt---catgcctctaatagtcaagtccttgagagaaggtagctgccctattggtggaatcgttatacaat |
31678058 |
T |
|
| Q |
445 |
atccacaattccttatgcaaagtgacaccatgttagaaaatgaacaatctcccaaccaacttggaa |
510 |
Q |
| |
|
|| |||||| || ||| |||| | ||||||||||||||||||| ||||||| | ||||| ||||| |
|
|
| T |
31678059 |
atgtacaattactgatgaaaagggtcaccatgttagaaaatgaaaaatctccgagccaacatggaa |
31678124 |
T |
|
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