View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8960_low_9 (Length: 295)
Name: NF8960_low_9
Description: NF8960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8960_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 48142983 - 48143266
Alignment:
| Q |
1 |
aatttcttcttattttcaagctatta----atggactaaaactaggtctacatttgacaaatgttccttgcacgttactctttttctcatgtaatattag |
96 |
Q |
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| T |
48142983 |
aatttcttcttattttcaagctattaattaatggactaaaactaggtctacatttgacaaatgttccttgcacgttactctttttctcatgtaatattag |
48143082 |
T |
|
| Q |
97 |
atgaccaaattaatataacgcgtatagaagtttttataaaactatagctgtaatcaaatgaaataggtaataaagattgtcatgatgtaaattttgtgaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48143083 |
atgaccaaattaatataacgcgtatagaagtttttataaaactatagctgtaatcaaatgaaataggtaataaagattgtcatgatgtaaattttgtgaa |
48143182 |
T |
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| Q |
197 |
attacgtatgttgatagtaaagttagaaagaaaacaagtgtgtagaaataggggaatatccaataacgtcgtcttcatgggcac |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48143183 |
attacgtatgttgatagtaaagttagaaagaaaacaagtgtgtagaaataggggaatatccaataacgtcgttttcatgggcac |
48143266 |
T |
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