View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8961_high_12 (Length: 331)
Name: NF8961_high_12
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 29007429 - 29007114
Alignment:
| Q |
1 |
atggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007429 |
atggtgattctcctcctagtccaccacacagtgattctcctcctagtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatgaggg |
29007330 |
T |
|
| Q |
101 |
tcgtttgggtgttccattgattacactcgtaatcatccgagctttcgcttggtcttannnnnnngttcacctttcagctatcaactagctagctcacact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007329 |
tcgtttgggtgttccattgattacactcgtaatcatcttagctttcgcttggtcttctttttttgttcacctttcagctatcaactagctagctcacact |
29007230 |
T |
|
| Q |
201 |
agacagtttatttcactgatgtgggtgtttggtcatttataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaattgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29007229 |
agacagtttatttcactgatgtgggtgtttggtcattcataatgacatattgtttagtacatatagattgtgatttggtttagtgactttagtcaattgt |
29007130 |
T |
|
| Q |
301 |
tccaaagtgagtgatg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29007129 |
tccaaagtgagtgatg |
29007114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University