View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_high_23 (Length: 235)
Name: NF8961_high_23
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23466520 - 23466299
Alignment:
| Q |
1 |
gtcaggtcaattgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaagaacaaataaaagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23466520 |
gtcaggtcaattgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaagaacaaataaaagct |
23466421 |
T |
|
| Q |
101 |
gctattatttattaattactcttaaccatggttctaaaatgctcttggggtcgcaannnnnnnaaaaaccttgatattgcggcaaaatacaaacaaatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23466420 |
gctattatttattaattactcttaaccatggttctaaaatgctcttggggtcgcaatttttttaaaaaccttgatattgcggcaaaatacaaacaaatgc |
23466321 |
T |
|
| Q |
201 |
aatcataatttgcttttatgat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
23466320 |
aatcataatttgcttttatgat |
23466299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23457151 - 23456930
Alignment:
| Q |
1 |
gtcaggtcaattgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaagaacaaataaaagct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23457151 |
gtcaggtcaattgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaagaacaaataaaagct |
23457052 |
T |
|
| Q |
101 |
gctattatttattaattactcttaaccatggttctaaaatgctcttggggtcgcaannnnnnnaaaaaccttgatattgcggcaaaatacaaacaaatgc |
200 |
Q |
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| T |
23457051 |
gctattatttattaattactcttaaccatggttctaaaatgctcttggggtcgcaatttttttaaaaaccttgatattgcggcaaaatacaaacaaatgt |
23456952 |
T |
|
| Q |
201 |
aatcataatttgcttttatgat |
222 |
Q |
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|||||||||||| | ||||||| |
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| T |
23456951 |
aatcataatttgttgttatgat |
23456930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 23536422 - 23536211
Alignment:
| Q |
11 |
ttgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaagaacaaataaaagctgctattattt |
110 |
Q |
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|||||||||||||||| |||||| || ||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23536422 |
ttgtttgtattttaccgcaatattaaagttataaacaaaattgtgatcgcaaaagcattttagaaccatggttaagagcaaataaaagctgctattattt |
23536323 |
T |
|
| Q |
111 |
attaattactcttaaccatggttctaaaatgctcttggggtcgcaannnnnnnaaaaaccttgatattgcggcaaaatacaaacaaatgcaatcataatt |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
23536322 |
attaattactcttaactatggttctaaaatgctcttgaggttgcaacttttttaaaaaccttgaaattgcggcgaaatacaaacaaatgcaatcataatt |
23536223 |
T |
|
| Q |
211 |
tgcttttatgat |
222 |
Q |
| |
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| || ||||||| |
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| T |
23536222 |
ttctattatgat |
23536211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 23456956 - 23457032
Alignment:
| Q |
11 |
ttgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaaga |
87 |
Q |
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||||||||||||| || ||||||||||||| | || ||||||| ||| ||| | |||||||||||||||||||||| |
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| T |
23456956 |
ttgtttgtattttgccgcaatatcaaggtttttaaaaaaattgcgaccccaagagcattttagaaccatggttaaga |
23457032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 23466325 - 23466401
Alignment:
| Q |
11 |
ttgtttgtattttaccacaatatcaaggttataaacaaaattgtgactgcaaaaacattttagaaccatggttaaga |
87 |
Q |
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||||||||||||| || ||||||||||||| | || ||||||| ||| ||| | |||||||||||||||||||||| |
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| T |
23466325 |
ttgtttgtattttgccgcaatatcaaggtttttaaaaaaattgcgaccccaagagcattttagaaccatggttaaga |
23466401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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