View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_high_25 (Length: 229)

Name: NF8961_high_25
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_high_25
NF8961_high_25
[»] chr4 (18 HSPs)
chr4 (1-229)||(4732695-4732923)
chr4 (1-229)||(10576398-10576626)
chr4 (33-186)||(21167717-21167870)
chr4 (25-137)||(26159793-26159905)
chr4 (25-186)||(46647184-46647344)
chr4 (25-167)||(23353630-23353771)
chr4 (1-96)||(31859842-31859937)
chr4 (25-161)||(9288223-9288359)
chr4 (91-206)||(21077201-21077316)
chr4 (71-167)||(24925812-24925908)
chr4 (28-123)||(29437522-29437617)
chr4 (71-162)||(25315243-25315334)
chr4 (31-136)||(20044216-20044321)
chr4 (71-143)||(17339825-17339897)
chr4 (71-162)||(1676307-1676398)
chr4 (71-162)||(1682835-1682926)
chr4 (71-137)||(10320231-10320297)
chr4 (72-154)||(27302798-27302880)
[»] chr3 (16 HSPs)
chr3 (33-186)||(21829106-21829259)
chr3 (25-144)||(11474876-11474996)
chr3 (1-163)||(26297760-26297920)
chr3 (25-163)||(26387810-26387948)
chr3 (33-165)||(8402525-8402656)
chr3 (86-167)||(19285107-19285187)
chr3 (27-156)||(33577752-33577881)
chr3 (33-125)||(26797222-26797313)
chr3 (99-154)||(12409478-12409533)
chr3 (25-133)||(30493229-30493338)
chr3 (54-138)||(2729613-2729697)
chr3 (35-143)||(23908246-23908354)
chr3 (88-163)||(1475309-1475384)
chr3 (32-154)||(13911285-13911408)
chr3 (72-122)||(16970291-16970341)
chr3 (33-163)||(18474182-18474311)
[»] chr1 (17 HSPs)
chr1 (25-186)||(18795169-18795330)
chr1 (25-144)||(26854285-26854402)
chr1 (34-201)||(31313525-31313692)
chr1 (52-206)||(26102025-26102179)
chr1 (34-167)||(18391089-18391222)
chr1 (36-167)||(27461158-27461289)
chr1 (1-167)||(15298811-15298977)
chr1 (34-167)||(25126487-25126620)
chr1 (28-163)||(30675495-30675631)
chr1 (35-162)||(50047193-50047321)
chr1 (88-162)||(12810334-12810408)
chr1 (54-144)||(13807747-13807837)
chr1 (33-133)||(21548689-21548789)
chr1 (33-131)||(25730544-25730643)
chr1 (54-165)||(34381717-34381828)
chr1 (34-167)||(19257778-19257911)
chr1 (71-163)||(25494491-25494583)
[»] chr8 (20 HSPs)
chr8 (19-229)||(29291716-29291925)
chr8 (25-138)||(28260255-28260368)
chr8 (2-209)||(10866953-10867160)
chr8 (25-165)||(27097765-27097907)
chr8 (19-144)||(30543792-30543916)
chr8 (1-165)||(5153767-5153931)
chr8 (25-165)||(14424778-14424918)
chr8 (25-133)||(28074555-28074662)
chr8 (25-167)||(6888158-6888297)
chr8 (76-229)||(30851116-30851269)
chr8 (25-206)||(31436447-31436628)
chr8 (74-159)||(5570156-5570241)
chr8 (25-133)||(11437460-11437568)
chr8 (71-163)||(16054305-16054397)
chr8 (27-137)||(28902126-28902237)
chr8 (100-162)||(28901381-28901443)
chr8 (34-163)||(32239298-32239428)
chr8 (71-163)||(14977118-14977211)
chr8 (99-144)||(41505577-41505622)
chr8 (1-65)||(13583461-13583525)
[»] chr7 (24 HSPs)
chr7 (19-186)||(3268925-3269092)
chr7 (33-134)||(12358735-12358836)
chr7 (19-167)||(17881458-17881606)
chr7 (26-132)||(5312752-5312858)
chr7 (27-163)||(7372532-7372670)
chr7 (26-163)||(30405607-30405742)
chr7 (26-154)||(20461614-20461742)
chr7 (25-131)||(8308997-8309103)
chr7 (25-163)||(24596969-24597107)
chr7 (33-138)||(23124936-23125042)
chr7 (34-165)||(1074461-1074593)
chr7 (99-138)||(19140020-19140059)
chr7 (99-138)||(20739419-20739458)
chr7 (54-163)||(1255208-1255317)
chr7 (86-163)||(29544530-29544607)
chr7 (71-154)||(21545811-21545894)
chr7 (101-163)||(9755811-9755873)
chr7 (101-163)||(9800607-9800669)
chr7 (25-66)||(3487331-3487372)
chr7 (99-167)||(2353281-2353349)
chr7 (37-144)||(4828821-4828926)
chr7 (33-165)||(18496574-18496706)
chr7 (99-163)||(20470850-20470914)
chr7 (71-159)||(22067818-22067906)
[»] chr6 (17 HSPs)
chr6 (31-229)||(12972356-12972554)
chr6 (55-186)||(20495790-20495920)
chr6 (25-114)||(24617571-24617660)
chr6 (33-167)||(9943123-9943257)
chr6 (25-163)||(14768234-14768372)
chr6 (25-167)||(32930438-32930580)
chr6 (36-136)||(23946819-23946919)
chr6 (25-116)||(16439516-16439607)
chr6 (16-123)||(26499803-26499910)
chr6 (99-186)||(26512817-26512904)
chr6 (99-186)||(26517933-26518020)
chr6 (99-163)||(24507624-24507688)
chr6 (25-186)||(9396572-9396726)
chr6 (99-144)||(1755601-1755646)
chr6 (27-163)||(17860415-17860552)
chr6 (25-165)||(14924383-14924523)
chr6 (34-165)||(15574934-15575065)
[»] chr5 (20 HSPs)
chr5 (25-219)||(26070429-26070623)
chr5 (25-167)||(7742835-7742977)
chr5 (25-165)||(20694649-20694789)
chr5 (86-161)||(24410956-24411031)
chr5 (25-138)||(19763858-19763969)
chr5 (86-206)||(23157815-23157935)
chr5 (33-114)||(25367654-25367735)
chr5 (71-144)||(25680626-25680699)
chr5 (34-144)||(18178132-18178241)
chr5 (33-163)||(19331522-19331650)
chr5 (33-163)||(25594665-25594796)
chr5 (35-138)||(29150882-29150984)
chr5 (89-163)||(24517365-24517439)
chr5 (27-131)||(22229847-22229952)
chr5 (71-163)||(12340026-12340118)
chr5 (28-123)||(30790827-30790922)
chr5 (86-144)||(17027557-17027615)
chr5 (53-163)||(20083476-20083586)
chr5 (101-171)||(25942144-25942214)
chr5 (75-163)||(17382051-17382139)
[»] chr2 (20 HSPs)
chr2 (1-229)||(19540982-19541210)
chr2 (25-228)||(24047328-24047531)
chr2 (33-154)||(21849047-21849167)
chr2 (25-167)||(17152160-17152303)
chr2 (25-154)||(18236268-18236397)
chr2 (25-138)||(18818733-18818846)
chr2 (34-199)||(22388732-22388892)
chr2 (76-206)||(32276530-32276660)
chr2 (54-163)||(30998782-30998891)
chr2 (71-163)||(28278435-28278527)
chr2 (16-167)||(31262006-31262156)
chr2 (99-144)||(18117013-18117058)
chr2 (25-134)||(32703900-32704009)
chr2 (88-131)||(1733143-1733186)
chr2 (102-144)||(19949597-19949639)
chr2 (71-129)||(27917995-27918053)
chr2 (86-167)||(15454558-15454638)
chr2 (76-165)||(21843019-21843108)
chr2 (99-144)||(29647585-29647630)
chr2 (53-138)||(34063839-34063924)
[»] scaffold0190 (1 HSPs)
scaffold0190 (54-167)||(11692-11805)
[»] scaffold0043 (1 HSPs)
scaffold0043 (34-206)||(58713-58885)
[»] scaffold0185 (1 HSPs)
scaffold0185 (33-182)||(1435-1584)
[»] scaffold0171 (1 HSPs)
scaffold0171 (70-144)||(21427-21501)
[»] scaffold0337 (1 HSPs)
scaffold0337 (99-163)||(1677-1741)
[»] scaffold0065 (1 HSPs)
scaffold0065 (99-163)||(12113-12177)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4732923 - 4732695
Alignment:
Q  1 cctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttg 100  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||     
T  4732923 cctcgatcctttaattggtatatggttctgctgatttacatgatttctcgttaaaaagactaaaaaagcttgtgaagttgtatggtttaggataaattta 4732824  T
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataa 200  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4732823 aattacaacgactcaaatgaaaacaatataaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataa 4732724  T
Q  201 ccaaaatcagaggcaaaaatgtcatatga 229  Q
    |||||||||||||||||||||||||||||    
T  4732723 ccaaaatcagaggcaaaaatgtcatatga 4732695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 10576626 - 10576398
Alignment:
Q  1 cctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttg 100  Q
    ||||||||||| |  || | ||| ||||| | ||||||||| |||||||  || ||||| ||||||  | |||||||||||||  ||||| |||||  ||    
T  10576626 cctcgatccttcacatgatgtcttgtttttccgatttacataatttctcactagaaagaatcaaaacacctatgaagttgtataatttagaataaaagtg 10576527  T
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataa 200  Q
    |||||||| ||||| |||||||| |||||||||||||| |||||  || ||||| | |||||||||||||| || ||||||||||| | | |||||||||    
T  10576526 aattacaatgactcgaatgaaaacaatacaaaatgttcttcaaaccatggacaacttctctaaatgatctcttattttccttcaaatggaaagaaaataa 10576427  T
Q  201 ccaaaatcagaggcaaaaatgtcatatga 229  Q
    | |||| || || | ||||| ||||||||    
T  10576426 ctaaaaacatagtctaaaatatcatatga 10576398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 21167870 - 21167717
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||||||||||||||  ||||||| |||||||  | |||||||||  ||  |||||||||||  | ||||||||| |||| |||||||| ||||||||    
T  21167870 gatttacatgatttctcactaaaaagtctcaaaacacctatgaagttacatattttaggataaaagtaaattacaacaactcgaatgaaaacaatacaaa 21167771  T
Q  133 atgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaa 186  Q
    |||||| | |||  || ||||| ||||||||||||  || || |||||||||||    
T  21167770 atgttccttaaaacatggacaactcctctaaatgacgtcttattttccttcaaa 21167717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 26159905 - 26159793
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||||||| |||||||||| ||  |||||||||||||||  | |||||||||| ||  ||||||| |||  | |||||||||||||| ||||||||     
T  26159905 gttttgctgatctacatgatttttcactaaaaagactcaaaacacatatgaagttggataatttaggacaaaactaaattacaacgactcgaatgaaaac 26159806  T
Q  125 aatacaaaatgtt 137  Q
    |||||||||||||    
T  26159805 aatacaaaatgtt 26159793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 46647344 - 46647184
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaaga-ctcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaa 123  Q
    |||||||||||||| ||||||||||| |||||| | ||||| |  |||||| ||||| ||| |||||||||||  ||||||||| |||||  ||||||||    
T  46647344 gttttgctgatttatatgatttctcgataaaaataactcaaca--cttatggagttgcatgatttaggataaaagtgaattacaccgactagaatgaaaa 46647247  T
Q  124 taatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaa 186  Q
     |||||||||| ||| | |||  |||||||| | ||||||||  |||| || |||||||||||    
T  46647246 caatacaaaatattcttgaaaccattgacaacttctctaaattttctcttattttccttcaaa 46647184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 23353771 - 23353630
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||||||||||||||  |||||||||||||||  || |||||  || | | ||||  ||||| ||||||||||||||||| ||||||||     
T  23353771 gttttgccgatttacatgatttctcactaaaaagactcaaaacactcatgaatgtgcacgatttat-ataaaattgaattacaacgactcgaatgaaaac 23353673  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    ||||||||| |||| | |||  ||||| |||| ||||||||||    
T  23353672 aatacaaaaagttccttaaaccattgataattactctaaatga 23353630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31859842 - 31859937
Alignment:
Q  1 cctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaa 96  Q
    ||||||||||| |  |||| ||| |||||||||||||||||||||||||  |||||||||||||||  | |||| ||||| ||| |||||||||||    
T  31859842 cctcgatccttcacctggtgtcttgttttgctgatttacatgatttctcactaaaaagactcaaaacacctatgcagttgcatgatttaggataaa 31859937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 9288359 - 9288223
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||||||||||||||  |||||||||| ||||| | |||| || |  ||| |||| ||||||  ||||||| || ||||||||||||||     
T  9288359 gttttgccgatttacatgatttctcactaaaaagactaaaaaaacatatggaggtacatgatttatgataaaaatgaattataatgactcaaatgaaaac 9288260  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctct 161  Q
    |||||||  ||||| |||||  ||||| || ||||||    
T  9288259 aatacaatttgttcctcaaaccattgaaaactcctct 9288223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 21077316 - 21077201
Alignment:
Q  91 gataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaattt-ccttcaaacgt 189  Q
    |||||| ||||| ||||||||||| ||| |||||||||||||| |||  |||||  |||||||| |||||||||||| || ||||||| |||||||| |     
T  21077316 gataaaattgaactacaacgactcgaataaaaataatacaaaaggtttctcaaaccattgacaactcctctaaatga-cttctaatttgccttcaaatgc 21077218  T
Q  190 agagaaaataaccaaaa 206  Q
    | |||||||||| ||||    
T  21077217 aaagaaaataactaaaa 21077201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 24925908 - 24925812
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    |||||||||  ||| |||| ||||||  ||||||||| ||||||||||||||| |||||||||||||  ||||| ||||||||| || | |||||||    
T  24925908 tatgaagttacatgatttatgataaaagtgaattacagcgactcaaatgaaaacaatacaaaatgttactcaaacgattgacaactcttttaaatga 24925812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 29437617 - 29437522
Alignment:
Q  28 ttgctgatttacatgatttctcgttaaaaagactcaaaa-agcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaa 123  Q
    |||| ||||||||||||||||| |||||||||||||||| ||| |||||||||| ||| |||||||||||  |||||||| |  |||| ||||||||    
T  29437617 ttgccgatttacatgatttctcattaaaaagactcaaaacagc-tatgaagttgcatgatttaggataaaactgaattacgaatactcgaatgaaaa 29437522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 25315243 - 25315334
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctcta 162  Q
    |||| ||||| ||| | |||||||||  | |||||||||||||||| |||||| ||||||| |||||| |||||| |||||||| |||||||    
T  25315243 tatggagttgcatgatctaggataaaacttaattacaacgactcaagtgaaaacaatacaatatgttcctcaaagcattgacaactcctcta 25315334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 20044321 - 20044216
Alignment:
Q  31 ctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataataca 130  Q
    |||| ||||||||||| ||  |||||||||||||||  | |||| ||||| ||| || ||||  || ||||||||||| ||||| |||||||| |||| |    
T  20044321 ctgaattacatgatttttcaataaaaagactcaaaatacatatggagttgcatgattaaggaagaaattgaattacaatgactcgaatgaaaacaatata 20044222  T
Q  131 aaatgt 136  Q
    ||||||    
T  20044221 aaatgt 20044216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 17339825 - 17339897
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaa 143  Q
    |||||| ||| ||| ||||||||||| ||||||||||| ||||  ||||||||  ||||||||||||| ||||    
T  17339825 tatgaaattgcatgatttaggataaaattgaattacaaagactagaatgaaaaagatacaaaatgttcctcaa 17339897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 1676307 - 1676398
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctcta 162  Q
    |||| ||||| ||| | ||||||||| |||||||||||  |||| |||||||| | ||||| |||||| |||||  |||||||| |||||||    
T  1676307 tatggagttgcatgatataggataaaattgaattacaaaaactcgaatgaaaacattacaatatgttcctcaaaccattgacaactcctcta 1676398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 1682835 - 1682926
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctcta 162  Q
    |||| ||||| ||| | ||||||||| |||||||||||  |||| |||||||| | ||||| |||||| |||||  |||||||| |||||||    
T  1682835 tatggagttgcatgatataggataaaattgaattacaaaaactcgaatgaaaacattacaatatgttcctcaaaccattgacaactcctcta 1682926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 10320231 - 10320297
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgtt 137  Q
    |||| ||||| ||||| |||||||||  |||||||||||||||| | |||||| ||||||| |||||    
T  10320231 tatggagttgcatggtctaggataaaagtgaattacaacgactcgagtgaaaagaatacaatatgtt 10320297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 154
Target Start/End: Complemental strand, 27302880 - 27302798
Alignment:
Q  72 atgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaa 154  Q
    ||||||||| ||| | ||| ||| | ||||||||||| ||||| | |||||| |||||||||||||| |||||  ||||||||    
T  27302880 atgaagttgcatgatctagtatataattgaattacaatgactcgagtgaaaacaatacaaaatgttcctcaaaccattgacaa 27302798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 21829106 - 21829259
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||||| ||||||||  ||| ||||| |||||  | |||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  21829106 gatttacaagatttctcactaacaagacccaaaactcatatgaagttgtatgatttaggataaaactgaattacaacgactcaaatgaaaataatacaaa 21829205  T
Q  133 atgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaa 186  Q
    |||||| |||||  |||||||| |||||||||||| ||| || |||||||||||    
T  21829206 atgttcctcaaaccattgacaactcctctaaatgacctcttattttccttcaaa 21829259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 11474996 - 11474876
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaa-gactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaa 123  Q
    ||||||| |||||||||||||||||  |||||| |||||||||  | |||||||||| ||| ||||||||||| |||||||||||||| || ||||||||    
T  11474996 gttttgccgatttacatgatttctcactaaaaaagactcaaaacacatatgaagttgcatgatttaggataaaattgaattacaacgagtcgaatgaaaa 11474897  T
Q  124 taatacaaaatgttcatcaaa 144  Q
    |||||||||| |||| |||||    
T  11474896 taatacaaaaagttcctcaaa 11474876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 26297920 - 26297760
Alignment:
Q  1 cctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttg 100  Q
    ||||||||||| | ||| | ||| ||||||| |||||||||||||| ||  |||| |||||||| |  | |||||||||| ||| ||||||||||| |||    
T  26297920 cctcgatccttcacttgatgtcttgttttgccgatttacatgatttatcactaaatagactcaaca--catatgaagttgcatgatttaggataaaattg 26297823  T
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||||||||||||| |||||||| |||| |||| |||  |||||  ||| |||| ||||||||    
T  26297822 aattacaacgactcgaatgaaaacaatataaaaagtttctcaaaccattaacaactcctctaa 26297760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 26387810 - 26387948
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||| |||||||||||||||||||| ||||||||||||||||    |||| ||||| ||| |||||||||||  | |||||| ||||| ||||||||||     
T  26387810 gtttagctgatttacatgatttctcattaaaaagactcaaaacatctatggagttgcatgatttaggataaaacttaattactacgacacaaatgaaaag 26387909  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||||| |||  |||||  |||||||| | ||||||    
T  26387910 aatacaaaacgtttctcaaaccattgacaactactctaa 26387948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 8402525 - 8402656
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||||| |||| |||| ||||| |||||||||  | |||| ||||| ||| |||| ||||||  |||||||||||||||| |||||||| ||||||||    
T  8402525 gatttacacgattcctcgctaaaa-gactcaaaacacctatggagttgcatgatttaagataaaaatgaattacaacgactcgaatgaaaacaatacaaa 8402623  T
Q  133 atgttcatcaaaggattgacaattcctctaaat 165  Q
     ||||| |||||  |||||||| ||||||||||    
T  8402624 ttgttcctcaaaccattgacaactcctctaaat 8402656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 19285187 - 19285107
Alignment:
Q  86 tttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||||||||| ||| ||| |  |||||||| ||||||||||||    
T  19285187 tttaggacaaaattgaattacaacgactcgaatgaaaataatacaaaattttc-tcatactattgacaactcctctaaatga 19285107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 33577881 - 33577752
Alignment:
Q  27 tttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataa 126  Q
    ||||| |||||||||| ||| || |||||||||||||||   |  |||| |||| ||| ||||||||| |  |||||||||| || |||||| |||| ||    
T  33577881 tttgccgatttacatgttttttctttaaaaagactcaaaccaccaatgaggttgcatgatttaggatataaatgaattacaatgaatcaaataaaaacaa 33577782  T
Q  127 tacaaaatgttcatcaaaggattgacaatt 156  Q
    ||||||| |||| |||||  ||||||||||    
T  33577781 tacaaaacgttcttcaaaccattgacaatt 33577752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 26797222 - 26797313
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaata 125  Q
    |||||||||||| ||||  |||||||||||||| | || ||||||||| ||| |||||||||||   |||||| |||||||| ||||||||||    
T  26797222 gatttacatgatatctctctaaaaagactcaaacacct-atgaagttgcatgatttaggataaaacagaattataacgactcgaatgaaaata 26797313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 12409533 - 12409478
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaa 154  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||  ||||||||    
T  12409533 tgaattacaacgactcaagtgaaaataatacaatatgttcttcaaaccattgacaa 12409478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 30493229 - 30493338
Alignment:
Q  25 gttttgctgatttacatgattt-ctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaa 123  Q
    |||||||| ||||||||||||| |||  |||||||||||||||  |  ||| | ||| ||| |||||||||||  | || ||||||||||| ||||||||    
T  30493229 gttttgcttatttacatgattttctcactaaaaagactcaaaacacccatggatttgcatgatttaggataaaactaaactacaacgactcgaatgaaaa 30493328  T
Q  124 taatacaaaa 133  Q
     |||||||||    
T  30493329 caatacaaaa 30493338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 2729613 - 2729697
Alignment:
Q  54 aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttc 138  Q
    |||| ||||||||  | |||||||||| |||||||||||||||  |||||||||| ||||| | |||||| |||| || ||||||    
T  2729613 aaaacactcaaaacacatatgaagttgcatggtttaggataaaaatgaattacaaggactcgagtgaaaacaatataatatgttc 2729697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 23908246 - 23908354
Alignment:
Q  35 tttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaat 134  Q
    |||||||||||||||  || |||||||||||   | |||||| ||| ||  ||| |||||||   |||||||||||| || |||||||| ||||||||||    
T  23908246 tttacatgatttctccctagaaagactcaaagcacctatgaaattgcattattttggataaaagggaattacaacgaatcgaatgaaaacaatacaaaat 23908345  T
Q  135 gttcatcaa 143  Q
    |||| ||||    
T  23908346 gttcctcaa 23908354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 1475309 - 1475384
Alignment:
Q  88 taggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||| | ||||||||||||||||| | |||||||||||||| || ||| |||||  ||||| || ||||||||    
T  1475309 taggatataattgaattacaacgactcgagtgaaaataatacaatatattcctcaaaccattgaaaactcctctaa 1475384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 13911408 - 13911285
Alignment:
Q  32 tgatttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataataca 130  Q
    ||||||||||||||||||  || |||| ||| ||||  | |||||||||| ||| | |||||||||  |||||||||| || |||| |||||| |||||     
T  13911408 tgatttacatgatttctcactacaaaacactaaaaacacatatgaagttgcatgatctaggataaaagtgaattacaatgattcaagtgaaaacaatacc 13911309  T
Q  131 aaatgttcatcaaaggattgacaa 154  Q
    | |||||| |||||  ||||||||    
T  13911308 atatgttcctcaaaccattgacaa 13911285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 16970341 - 16970291
Alignment:
Q  72 atgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaa 122  Q
    |||||||| |||| |||||||||||  ||||||||||||||| ||||||||    
T  16970341 atgaagttttatgatttaggataaacgtgaattacaacgacttaaatgaaa 16970291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 18474311 - 18474182
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||||||||||||||  | |||||||||||||  | |||| ||||| ||| ||||||||||   |||||||||| || || |||| ||| |||||||     
T  18474311 gatttacatgatttctcactgaaaagactcaaaacacctatggagttgcatgatttaggataacagtgaattacaatgaatcgaatg-aaacaatacaat 18474213  T
Q  133 atgttcatcaaaggattgacaattcctctaa 163  Q
      |||| ||||| |||||| || ||||||||    
T  18474212 cagttcctcaaacgattgataaatcctctaa 18474182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 18795330 - 18795169
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||||||||||||||| ||||||||  ||||| |||||||||  | ||||||| ||||||  ||||||||||  | ||||||||  |||||||||||||     
T  18795330 gttttgctgatttacacgatttctcactaaaatgactcaaaacacctatgaagctgtatgacttaggataaaagtaaattacaattactcaaatgaaaac 18795231  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaa 186  Q
     ||||||||||||| |||||  ||||| || |||||||||||| ||| || |||||||||||    
T  18795230 gatacaaaatgttcctcaaaccattgataaatcctctaaatgacctcttattttccttcaaa 18795169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 26854285 - 26854402
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| | |||||||||||||||  |||||||||||||||    ||||||||||||||  |||||||||| ||||||||||||||||  ||||||||     
T  26854285 gttttgccggtttacatgatttctc--taaaaagactcaaaacatctatgaagttgtatgaattaggataaaattgaattacaacgacttgaatgaaaag 26854382  T
Q  125 aatacaaaatgttcatcaaa 144  Q
    ||||||||| |||| |||||    
T  26854383 aatacaaaaagttcctcaaa 26854402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 31313692 - 31313525
Alignment:
Q  34 atttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaa 133  Q
    |||||||||||||||   |||||| ||||||||  | |||||||||| ||| |||||||||||  |||||||||||||||  || ||||| |||||||||    
T  31313692 atttacatgatttcttactaaaaaaactcaaaacacctatgaagttgcatgatttaggataaaagtgaattacaacgacttgaacgaaaacaatacaaaa 31313593  T
Q  134 tgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataac 201  Q
     |||| | ||   |||||||| | |||||||||| ||| || || |||||||| | | ||||||||||    
T  31313592 cgttcctaaagacattgacaacttctctaaatgaactcttatttgccttcaaatgcaaagaaaataac 31313525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 26102179 - 26102025
Alignment:
Q  52 taaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattga 151  Q
    |||||||||||||||  |  ||| ||||| ||| |||||||||||  ||||||||||| |||| |||||||| ||||||||||| || |||||  |||||    
T  26102179 taaaaagactcaaaacacccatggagttgcatgatttaggataaaagtgaattacaacaactcgaatgaaaacaatacaaaatggtcctcaaaccattga 26102080  T
Q  152 caattcctctaaatgatctcctaatttccttcaaacgtagagaaaataaccaaaa 206  Q
     || | |||||||||| ||| || || | |||||| | | |||||||||| ||||    
T  26102079 taaattctctaaatgacctcttatttgcgttcaaatgcaaagaaaataactaaaa 26102025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 18391222 - 18391089
Alignment:
Q  34 atttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaa 133  Q
    |||||||||||||||   |||||| |||| ||| || |||| | ||| ||| | |||||||||  | |||||||||||||||||||||||||||| ||||    
T  18391222 atttacatgatttcttcctaaaaatactctaaacgcctatggaattgcatgatctaggataaaagttaattacaacgactcaaatgaaaataatataaaa 18391123  T
Q  134 tgttcatcaaaggattgacaattcctctaaatga 167  Q
    ||||  |||||  |||||||| | || |||||||    
T  18391122 tgttactcaaaccattgacaacttctttaaatga 18391089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 27461158 - 27461289
Alignment:
Q  36 ttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatg 135  Q
    |||||||||||||   ||||||||||  |||  | |||||||||| ||  |||||||||||  ||||||| ||| |||  |||||||| |||||||||||    
T  27461158 ttacatgatttcttactaaaaagactacaaacacctatgaagttgcataatttaggataaaagtgaattataacaacttgaatgaaaacaatacaaaatg 27461257  T
Q  136 ttcatcaaaggattgacaattcctctaaatga 167  Q
    ||| |||||  || ||||||| ||||||||||    
T  27461258 ttcctcaaattatggacaattgctctaaatga 27461289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 15298811 - 15298977
Alignment:
Q  1 cctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttg 100  Q
    |||||||||||||  || | ||| ||||||| |||||||||||||| ||  |||| |||| |||||  | |||||||||| ||| ||| |||||||  |     
T  15298811 cctcgatcctttacatgatttcttgttttgccgatttacatgatttatcactaaatagacacaaaacacctatgaagttgcatgattttggataaaactt 15298910  T
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    |||||||| || ||||||||| | |||||||||  ||| |||||  |||||||| || | |||||||    
T  15298911 aattacaatgattcaaatgaatacaatacaaaaacttcctcaaaccattgacaactcttgtaaatga 15298977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 25126620 - 25126487
Alignment:
Q  34 atttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaa 133  Q
    |||||||||||||||| ||||||||||||||||  | |||  | |   ||| |||||||||||  |||||||| ||||||||||| |||| |||||||||    
T  25126620 atttacatgatttctcattaaaaagactcaaaacacatatataatcacatgatttaggataaaactgaattaccacgactcaaataaaaacaatacaaaa 25126521  T
Q  134 tgttcatcaaaggattgacaattcctctaaatga 167  Q
      ||  |||||  |||||||| ||||| ||||||    
T  25126520 aatttctcaaaccattgacaactcctccaaatga 25126487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 30675631 - 30675495
Alignment:
Q  28 ttgctgatttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataa 126  Q
    |||| |||||||||||||||||  || |||| ||||||||  | |||| ||||| ||| | ||||| |||  || ||||||||||||| | |||||| ||    
T  30675631 ttgccgatttacatgatttctcactataaaacactcaaaacacctatggagttgcatgatataggacaaaagtgtattacaacgactcgagtgaaaacaa 30675532  T
Q  127 tacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||| |||||| |||||  |||||||| ||||||||    
T  30675531 tacaatatgttcctcaaaccattgacaactcctctaa 30675495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 50047321 - 50047193
Alignment:
Q  35 tttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaa 133  Q
    |||||||||||||||| || |||| ||||||||    |||| ||||||||| |||||||||||  |||||||| | ||||| | |||||| ||||||| |    
T  50047321 tttacatgatttctcgctacaaaacactcaaaacatatatggagttgtatgatttaggataaaagtgaattaccatgactcgagtgaaaacaatacaata 50047222  T
Q  134 tgttcatcaaaggattgacaattcctcta 162  Q
    ||||  |||||  |||||||| |||||||    
T  50047221 tgtttctcaaatcattgacaactcctcta 50047193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 12810408 - 12810334
Alignment:
Q  88 taggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctcta 162  Q
    |||||||||  |||||||||||||||  |||||||| ||||||| |||||| |||||  |||||||| |||||||    
T  12810408 taggataaaaatgaattacaacgacttgaatgaaaacaatacaatatgttcctcaaaccattgacaactcctcta 12810334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 13807747 - 13807837
Alignment:
Q  54 aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    |||||||||||||    |||||||||| ||| ||  |||| ||  |||||||||||||||  |||||||| ||||||||||||||||||||    
T  13807747 aaaagactcaaaacaactatgaagttgcatgattagggatgaacgtgaattacaacgacttgaatgaaaacaatacaaaatgttcatcaaa 13807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 21548789 - 21548689
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    ||||||| ||||||| |  || |||||||| |||  |||||| ||||| ||  |||||||||||  |||||||||||||||| |||||||| |||| |||    
T  21548789 gatttacttgatttcacactagaaagactccaaacacttatggagttgcattttttaggataaaactgaattacaacgactcgaatgaaaacaatataaa 21548690  T
Q  133 a 133  Q
    |    
T  21548689 a 21548689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 25730544 - 25730643
Alignment:
Q  33 gatttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaa 131  Q
    |||||||||||||||||| || |||| ||||||||  | | |||||||| ||| ||||||||||| ||||||| ||| || |  |||||||| |||||||    
T  25730544 gatttacatgatttctcgctacaaaacactcaaaacacctgtgaagttgcatgatttaggataaaattgaatttcaatgatttgaatgaaaacaatacaa 25730643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 34381828 - 34381717
Alignment:
Q  54 aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgaca 153  Q
    |||| ||||||||  | ||||||||||  || ||||| ||| |  |||||||||||||||| |||||||| |||| || |||||| |||||  ||| |||    
T  34381828 aaaatactcaaaacacctatgaagttgcgtgatttagaatagaagtgaattacaacgactcgaatgaaaacaatataatatgttcttcaaaccattaaca 34381729  T
Q  154 attcctctaaat 165  Q
    | ||||||||||    
T  34381728 actcctctaaat 34381717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 19257778 - 19257911
Alignment:
Q  34 atttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaa 133  Q
    ||||||| ||||||||  |||||| ||||||||  | || | | ||| ||| ||||||||||| | ||||||||| ||||  |||||||| |||||| ||    
T  19257778 atttacacgatttctcactaaaaatactcaaaacacctaaggacttgcatgatttaggataaaatcgaattacaatgactagaatgaaaacaatacagaa 19257877  T
Q  134 tgttcatcaaaggattgacaattcctctaaatga 167  Q
     |||| |||||  ||||||||   ||||||||||    
T  19257878 agttcctcaaatcattgacaacctctctaaatga 19257911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 25494491 - 25494583
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||| ||||| ||| |||||||||||  | |||||||| |||||||  ||||| || |||| |||||| |||||  |||||||| ||||||||    
T  25494491 tatgtagttgcatgatttaggataaaagtaaattacaaggactcaagagaaaacaagacaatatgttcctcaaaccattgacaactcctctaa 25494583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 29291925 - 29291716
Alignment:
Q  19 tatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaat 118  Q
    ||||| ||||||| ||||||||||||||||   |||||||||||||||  ||||| |||||| ||| |||||||||||  || |||||||||||||||||    
T  29291925 tatcttgttttgccgatttacatgatttcttactaaaaagactcaaaatacttataaagttgcatgatttaggataaaactgcattacaacgactcaaat 29291826  T
Q  119 gaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaattt-ccttcaaacgtagagaaaataaccaaaatcagaggcaaa 217  Q
    ||||| |||| ||||  ||| |||||  ||||| || ||||||| |||| || ||||||| |||||||| | | |||||||||| |||| || || | ||    
T  29291825 gaaaa-aatataaaaaattcctcaaaccattgataactcctctatatga-cttctaatttgccttcaaatgaaaagaaaataacaaaaaacatagcctaa 29291728  T
Q  218 aatgtcatatga 229  Q
    ||| ||||||||    
T  29291727 aatatcatatga 29291716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 28260255 - 28260368
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||||||||||||||||||||||||  |||||||||||||||  | |||| |||   ||| |||||||||||  | ||||||||||||| ||||||||||    
T  28260255 gttttgctgatttacatgatttctcactaaaaagactcaaaacacctatggagtctcatgatttaggataaacctaaattacaacgactaaaatgaaaat 28260354  T
Q  125 aatacaaaatgttc 138  Q
    ||||||||||||||    
T  28260355 aatacaaaatgttc 28260368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 10867160 - 10866953
Alignment:
Q  2 ctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttga 101  Q
    |||||||||| |  |||||||| ||||||| || ||||||||||||||  |||||||| |||||   | | || ||||| ||| |||  ||||||  |||    
T  10867160 ctcgatccttcacgtggtatcttgttttgccgacttacatgatttctcactaaaaagattcaaagcacctttggagttgcatgatttgagataaaactga 10867061  T
Q  102 attacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataac 201  Q
    |||||||||||||||||||||| |||||||||| ||| |||||  |||||||| | |||||||||| ||| || || ||||| ||   | ||||||||||    
T  10867060 attacaacgactcaaatgaaaacaatacaaaatattcctcaaaccattgacaactactctaaatgacctcttatttgccttcgaattcaaagaaaataac 10866961  T
Q  202 caaaatca 209  Q
     |||||||    
T  10866960 taaaatca 10866953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 27097765 - 27097907
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaa--gactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaa 122  Q
    ||||||| |||||||||||||||||  ||||||  ||||  |||  | |||||||||| ||| |||| ||||||  ||||||||||||||||||||||||    
T  27097765 gttttgccgatttacatgatttctcactaaaaaaagactttaaacacctatgaagttgcatgatttatgataaaactgaattacaacgactcaaatgaaa 27097864  T
Q  123 ataatacaaaatgttcatcaaaggattgacaattcctctaaat 165  Q
    | ||| ||| |||||| |||||  |||||||||||||||||||    
T  27097865 acaatgcaacatgttcctcaaaccattgacaattcctctaaat 27097907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 30543916 - 30543792
Alignment:
Q  19 tatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaat 118  Q
    ||||| ||||| | |||||||||||||||||   ||||||||||||||  | |||  | ||| ||| |||||||||||  ||||||||||| ||||||||    
T  30543916 tatcttgttttaccgatttacatgatttctcaccaaaaagactcaaaacacctatataattgcatgatttaggataaaagtgaattacaacaactcaaat 30543817  T
Q  119 gaaaataatacaaaatgttcatcaaa 144  Q
    ||||| ||||||||| ||||||||||    
T  30543816 gaaaacaatacaaaa-gttcatcaaa 30543792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 5153931 - 5153767
Alignment:
Q  1 cctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttg 100  Q
    ||||||||||| | ||  | ||| |||||||  |||||||||||||||   |||||||||||||||  | |||  ||||| ||| |||| ||||||  ||    
T  5153931 cctcgatccttcactttatgtcttgttttgcctatttacatgatttcttactaaaaagactcaaaacacctatcgagttgaatgatttaagataaaactg 5153832  T
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaat 165  Q
    |||||||| ||||| ||||||||||||||||| | ||  | |||  |||||||| ||||||||||    
T  5153831 aattacaatgactcgaatgaaaataatacaaattttttctaaaatcattgacaactcctctaaat 5153767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 14424778 - 14424918
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||||||||||||||  |||||| ||  ||||  | |||| ||||| ||| |||||||||||  |||||||||||||||| ||||||||     
T  14424778 gttttgccgatttacatgatttctcactaaaaaaacctaaaacacctatggagttgcatgatttaggataaaactgaattacaacgactcgaatgaaaac 14424877  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaat 165  Q
     ||| |||| |||| |||||  |||||| | | ||||||||    
T  14424878 catataaaaagttcctcaaaccattgactacttctctaaat 14424918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 28074662 - 28074555
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||||||  ||||||||||||||||  ||||||||||| |||  | |||| ||||| ||| |||||||||||  |||||| ||||||||| ||||||||     
T  28074662 gttttgcatatttacatgatttctcactaaaaagactcgaaacacctatggagttgcatgatttaggataaaagtgaattgcaacgactc-aatgaaaac 28074564  T
Q  125 aatacaaaa 133  Q
    |||||||||    
T  28074563 aatacaaaa 28074555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 6888158 - 6888297
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||||| ||||||||||||||||||  ||||| |||||||||  | |  | ||||| ||| ||||||||| |  |||||||||| ||||||||||||||     
T  6888158 gttttgttgatttacatgatttctcactaaaatgactcaaaacacct--ggagttgcatgatttaggatagaactgaattacaatgactcaaatgaaaa- 6888254  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    |||||||||||||  || ||  |||||||| || |||||||||    
T  6888255 aatacaaaatgtttctctaaccattgacaactcgtctaaatga 6888297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 229
Target Start/End: Original strand, 30851116 - 30851269
Alignment:
Q  76 agttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaa 175  Q
    ||||| ||| |||||||||||| ||||||||||||| || ||||||||||||| ||||  ||| |||||  ||  |||| || | ||||||| || ||||    
T  30851116 agttgcatgatttaggataaatctgaattacaacgattcgaatgaaaataatataaaaacttcctcaaaccatcaacaactcttataaatga-cttctaa 30851214  T
Q  176 -tttccttcaaacgtagagaaaataaccaaaatcagaggcaaaaatgtcatatga 229  Q
     |||||||||||  || |||||||||| |||| || || ||||||| ||||||||    
T  30851215 ttttccttcaaatataaagaaaataactaaaaacatagccaaaaatatcatatga 30851269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 31436628 - 31436447
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||||| ||||||||||||||||||  |||||||| ||||||  | |||| ||||| ||| |||||||||||  | |||||||  ||||| ||||||||     
T  31436628 gttttgttgatttacatgatttctcactaaaaagattcaaaacacctatgtagttgcatgatttaggataaaactaaattacactgactcgaatgaaaaa 31436529  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataaccaaaa 206  Q
    |||| |   | ||| |||||  |||||||| |||||||||| |  || || || |||||||| | ||| |||||||| ||||    
T  31436528 aatatagtttattcctcaaatcattgacaactcctctaaattacatcttatttgccttcaaatgcagataaaataactaaaa 31436447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 5570156 - 5570241
Alignment:
Q  74 gaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcct 159  Q
    ||||||| ||| | |||||||||  ||||||||||| |||| | |||||| ||||||| |||||| |||||| |||||||| ||||    
T  5570156 gaagttgcatgatataggataaaagtgaattacaacaactcgagtgaaaacaatacaatatgttcctcaaagtattgacaactcct 5570241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 11437568 - 11437460
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||||||||||||||  |||||||||||||||  | |||| ||||| |||   || ||| ||  ||||||| |||||||| ||||||||     
T  11437568 gttttgccgatttacatgatttctcactaaaaagactcaaaatacatatggagttgcatgacctatgatgaaactgaattataacgactcgaatgaaaac 11437469  T
Q  125 aatacaaaa 133  Q
    || ||||||    
T  11437468 aacacaaaa 11437460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 16054397 - 16054305
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||| |||| |||| | |||||||||  ||||||||||| |||| | |||||| |||||||||||||| | |||  |||||||| ||||||||    
T  16054397 tatggagttttatgatctaggataaaaatgaattacaacaactcgagtgaaaacaatacaaaatgttccttaaatcattgacaactcctctaa 16054305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 28902237 - 28902126
Alignment:
Q  27 tttgctgatttacatgatttctcgttaa-aaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaata 125  Q
    |||| ||||||||||||||||||  ||  ||| ||| ||||  |||||| | |||  |||| |||||||||  |||||||||||||||| |||||||| |    
T  28902237 tttgttgatttacatgatttctcactactaaacactaaaaacacttatggatttgcgtggtataggataaaagtgaattacaacgactcgaatgaaaaca 28902138  T
Q  126 atacaaaatgtt 137  Q
    |||||| |||||    
T  28902137 atacaatatgtt 28902126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 28901381 - 28901443
Alignment:
Q  100 gaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctcta 162  Q
    ||||||||||||||| | |||||| ||||||| |||||| |||||  |||||||| |||||||    
T  28901381 gaattacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgacaactcctcta 28901443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 32239428 - 32239298
Alignment:
Q  34 atttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    ||||||| ||||||||  || |||| ||||||||   ||||| ||||| ||| |||| ||||||  |||||| ||||||||||| | |||| |||||||     
T  32239428 atttacacgatttctcactacaaaacactcaaaacatttatggagttgcatgatttaagataaaagtgaattgcaacgactcaagtaaaaacaatacaat 32239329  T
Q  133 atgttcatcaaaggattgacaattcctctaa 163  Q
    |||||  |||||  |||||||| ||||||||    
T  32239328 atgttactcaaaccattgacaactcctctaa 32239298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 14977118 - 14977211
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatg-aaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||| ||||| ||| |||||||||||  |||||||||| ||||| | || |||| ||||||| |||||| |||||  |||||||| ||||||||    
T  14977118 tatggagttgcatgatttaggataaaagtgaattacaatgactcgagtgaaaaacaatacaatatgttcctcaaaccattgacaactcctctaa 14977211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 41505577 - 41505622
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    ||||||||||| |||| ||||||||||||||||||| ||| |||||    
T  41505577 tgaattacaacaactcgaatgaaaataatacaaaatattcctcaaa 41505622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13583461 - 13583525
Alignment:
Q  1 cctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaa 65  Q
    ||||||||||| | ||| | ||| ||||||  |||||||||||||||||  ||||||||||||||    
T  13583461 cctcgatccttcacttgatgtcttgttttgtcgatttacatgatttctcactaaaaagactcaaa 13583525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 3268925 - 3269092
Alignment:
Q  19 tatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaat 118  Q
    ||||| ||||||| |||||||||||||||||  |||||||||| ||||  | || ||||||| ||| |||||||||||  ||||||||||| |||||||     
T  3268925 tatcttgttttgccgatttacatgatttctcactaaaaagacttaaaacacatacgaagttgcatgatttaggataaaagtgaattacaacaactcaaac 3269024  T
Q  119 gaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaa 186  Q
    ||||| |||||||||||||  |||||  | |||||| |||||||||| | ||| || |||| ||||||    
T  3269025 gaaaacaatacaaaatgttactcaaaccaatgacaactcctctaaataacctcttagtttctttcaaa 3269092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 12358735 - 12358836
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||| || |||||||  |||||||||||||||  | |||||||||| ||| |||||||||||  |||||||||||||||||||||| || ||||||||    
T  12358735 gatttatattatttctcactaaaaagactcaaaacacctatgaagttgaatgatttaggataaaaatgaattacaacgactcaaatgagaaaaatacaaa 12358834  T
Q  133 at 134  Q
    ||    
T  12358835 at 12358836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 17881458 - 17881606
Alignment:
Q  19 tatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaat 118  Q
    ||||| ||||| | ||||||||||| |||||  |||||||||||||||  | ||| |||||| ||| |||| |||||| || |||||||| || || |||    
T  17881458 tatcttgtttttccgatttacatgacttctcactaaaaagactcaaaatacctattaagttgcatgatttatgataaaattaaattacaatgattcgaat 17881557  T
Q  119 gaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    ||||||||||||||| |||| | |||  |||||||| |||| |||||||    
T  17881558 gaaaataatacaaaaagttcctaaaatcattgacaactcctttaaatga 17881606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 5312752 - 5312858
Alignment:
Q  26 ttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaata 125  Q
    |||||| |||||||||||||| ||  |||||||||||||||  | |||| ||||| ||| | || ||||||  ||||||||||||||||||||||||| |    
T  5312752 ttttgccgatttacatgatttatcactaaaaagactcaaaacacctatggagttgcatgctataagataaaagtgaattacaacgactcaaatgaaaaca 5312851  T
Q  126 atacaaa 132  Q
    |||||||    
T  5312852 atacaaa 5312858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 7372532 - 7372670
Alignment:
Q  27 tttgctgatttacatgatttctcgttaaaaag-actcaaaaagcttatgaagttgtatggtttag-gataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||||||||||||| ||||||||  ||||||  ||| ||||  | |||||||||| ||| ||| | |||||| ||||||||||||||||| ||||||||     
T  7372532 tttgctgatttacaagatttctcactaaaaaacactgaaaacacctatgaagttgcatgatttcgtgataaaattgaattacaacgactcgaatgaaaac 7372631  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||||| ||||||||||  | |||||| ||||||||    
T  7372632 aatacaaaaagttcatcaaaccaatgacaactcctctaa 7372670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 30405742 - 30405607
Alignment:
Q  26 ttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaata 125  Q
    |||||| |||||||||||||||||  |||||| ||||||||  | |||| ||||| |||||||||||||||  |||||||||| || |||||| |||| |    
T  30405742 ttttgccgatttacatgatttctcactaaaaa-actcaaaacacctatggagttgcatggtttaggataaa-gtgaattacaatgagtcaaataaaaaca 30405645  T
Q  126 atacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||||||| |||| |||||  ||| |||| ||||||||    
T  30405644 atacaaaaagttcctcaaaccattaacaactcctctaa 30405607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 20461614 - 20461742
Alignment:
Q  26 ttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaata 125  Q
    |||||| |||||||||||||||||  ||||||||||| |||  | ||| | ||||  || |||||||| || |||| |||||||||||| |||||||| |    
T  20461614 ttttgccgatttacatgatttctcactaaaaagactcgaaacacctatcatgttgcgtgatttaggatgaaattgagttacaacgactcgaatgaaaaca 20461713  T
Q  126 atacaaaatgttcatcaaaggattgacaa 154  Q
    ||||||| ||||| |||||  ||||||||    
T  20461714 atacaaattgttcctcaaaccattgacaa 20461742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 8308997 - 8309103
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||||||||||||||||||||   |||||||||||||||    |||| ||||| ||| |||||||||||  | ||| |||| ||||||||||||||     
T  8308997 gttttgctgatttacatgatttcttactaaaaagactcaaaacatgtatggagttgcatgatttaggataaaactaaatcacaatgactcaaatgaaaac 8309096  T
Q  125 aatacaa 131  Q
    |||||||    
T  8309097 aatacaa 8309103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 24596969 - 24597107
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||||| ||||||||  |||||||||| ||||  | || | ||||| ||| ||||||||||| |||||||||||||||||| || ||||     
T  24596969 gttttgccgatttacacgatttctcactaaaaagacttaaaacacctacggagttgcatgatttaggataaaattgaattacaacgactcagatcaaaac 24597068  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||| |||||  | |||||||  |||||||| || |||||    
T  24597069 aatgcaaaaactccatcaaaccattgacaactcttctaa 24597107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 23125042 - 23124936
Alignment:
Q  33 gatttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaa 131  Q
    |||||||||||||||||  || |||| ||||||||  | |||  ||||||||| ||| |||||||| |||||||||||||||| | |||||| |||||||    
T  23125042 gatttacatgatttctcactagaaaacactcaaaacacctatagagttgtatgattttggataaatgtgaattacaacgactcgagtgaaaacaatacaa 23124943  T
Q  132 aatgttc 138  Q
     ||||||    
T  23124942 tatgttc 23124936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 1074593 - 1074461
Alignment:
Q  34 atttacatgatttctcgttaaaaa-gactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    ||||||||||||||||  |||||| ||| |||||  |||||| ||||||||  |||||||||||    |||||||| || || ||||||||||||||||     
T  1074593 atttacatgatttctcactaaaaaagacacaaaacacttatggagttgtataatttaggataaaagcaaattacaatgaatcgaatgaaaataatacaat 1074494  T
Q  133 atgttcatcaaaggattgacaattcctctaaat 165  Q
      |||| |||||  |||||||| ||||||||||    
T  1074493 tggttcctcaaaccattgacaactcctctaaat 1074461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 19140020 - 19140059
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttc 138  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  19140020 tgaattacaacgactcaaataaaaataatacaaaatgttc 19140059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 20739419 - 20739458
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttc 138  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  20739419 tgaattacaacgactcaaataaaaataatacaaaatgttc 20739458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 1255208 - 1255317
Alignment:
Q  54 aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgaca 153  Q
    |||| ||||||||  | |||||||||| ||| |||||||||||  |||||||||| ||||| | |||||| |||||||  | ||| |||||  |||||||    
T  1255208 aaaacactcaaaacacctatgaagttgcatgatttaggataaaaatgaattacaatgactcgagtgaaaacaatacaatttattcctcaaaccattgaca 1255307  T
Q  154 attcctctaa 163  Q
    | ||||||||    
T  1255308 actcctctaa 1255317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 29544607 - 29544530
Alignment:
Q  86 tttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||| |||  |||||||||||||||| | |||||| ||||||| |||||| |||||  |||||||| ||||||||    
T  29544607 tttaggagaaaagtgaattacaacgactcgagtgaaaacaatacaatatgttcctcaaactattgacaactcctctaa 29544530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 21545811 - 21545894
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaa 154  Q
    |||| ||||| ||| |||||||||||  ||| |||||||||||| | |||||| ||||||| |||||| |||||  ||||||||    
T  21545811 tatgtagttgcatgatttaggataaaagtgagttacaacgactcgagtgaaaacaatacaatatgttcctcaaaccattgacaa 21545894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 9755873 - 9755811
Alignment:
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||||||||||||| | |||||| ||||||||| |||| |||||  | |||||||||||||||    
T  9755873 aattacaacgactcgagtgaaaaaaatacaaaacgttcctcaaactagtgacaattcctctaa 9755811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 9800669 - 9800607
Alignment:
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||||||||||||| | |||||| ||||||||| |||| |||||  | |||||||||||||||    
T  9800669 aattacaacgactcgagtgaaaaaaatacaaaacgttcctcaaactagtgacaattcctctaa 9800607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 3487331 - 3487372
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaa 66  Q
    ||||||| |||| |||||||||||| ||||||||||||||||    
T  3487331 gttttgccgattcacatgatttctcattaaaaagactcaaaa 3487372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 2353281 - 2353349
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    |||||||||||| ||| |||||| | ||||||||||||||  ||||| ||  |||| ||||||||||||    
T  2353281 tgaattacaacgtctcgaatgaatacaatacaaaatgttccccaaagcatgtacaactcctctaaatga 2353349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 4828926 - 4828821
Alignment:
Q  37 tacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgt 136  Q
    ||||||||||||| |||||||||||||| ||   |||| ||||| ||| |||||||||||  | |||||||| || || | | |||| ||||||||| ||    
T  4828926 tacatgatttctcattaaaaagactcaacaa--ctatggagttgcatgatttaggataaaagtaaattacaatgaatcgattaaaaagaatacaaaaagt 4828829  T
Q  137 tcatcaaa 144  Q
    || |||||    
T  4828828 tcctcaaa 4828821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 18496706 - 18496574
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||||||||| ||||   ||| || |||||||  | |||||||| | ||| |||||||||||  |||||||||| || || |||||||| ||| ||||    
T  18496706 gatttacatgatatctcaccaaataggctcaaaacacctatgaagtcgcatgatttaggataaaaatgaattacaatgattcgaatgaaaacaattcaaa 18496607  T
Q  133 atgttcatcaaaggattgacaattcctctaaat 165  Q
      |||| |||||  |||||||| | ||||||||    
T  18496606 tagttcctcaaacaattgacaacttctctaaat 18496574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 20470850 - 20470914
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||||||||||| || |||||| |||| || |||||| |||||  |||||||| ||||||||    
T  20470850 tgaattacaacgacttaagtgaaaacaatataatatgttcctcaaaccattgacaactcctctaa 20470914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 22067818 - 22067906
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcct 159  Q
    |||| ||||| ||| | ||||||||| ||||||||||| ||||| | |||||| ||||||  |||||| |||||  |||||||| ||||    
T  22067818 tatggagttgcatgatctaggataaaattgaattacaatgactcgagtgaaaacaatacattatgttcctcaaaccattgacaactcct 22067906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 12972356 - 12972554
Alignment:
Q  31 ctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataataca 130  Q
    |||||||||||||||||||  |||||||||||||||  | |||||||||| ||| ||||||||| |  |||||||||||| ||  |||||||  ||||||    
T  12972356 ctgatttacatgatttctccctaaaaagactcaaaacacgtatgaagttgcatgatttaggatacaactgaattacaacgtcttgaatgaaagcaataca 12972455  T
Q  131 aaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataaccaaaatcagaggcaaaaatgtcatatga 229  Q
    |||| |||   |||  |||||||| |||||||||||| ||| || || |||||||| | | |||||||||| |||| || || ||||||| ||| ||||    
T  12972456 aaattttccgtaaaacattgacaactcctctaaatgacctcttagttgccttcaaatgcaaagaaaataactaaaaacatagccaaaaatatcaaatga 12972554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 20495790 - 20495920
Alignment:
Q  55 aaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaa 154  Q
    ||||||||||||  |||||||||||| ||  |||| |||||| ||||||||||||||||||||| |||| ||| |||||||||| |||||  ||||| ||    
T  20495790 aaagactcaaaacacttatgaagttgcataatttaagataaaattgaattacaacgactcaaataaaaacaat-caaaatgttcctcaaaccattgataa 20495888  T
Q  155 ttcctctaaatgatctcctaatttccttcaaa 186  Q
     | ||||| |||| ||| ||||| ||||||||    
T  20495889 cttctctatatgacctcttaattgccttcaaa 20495920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 24617660 - 24617571
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactc 114  Q
    ||||||||||||||||| |||||||  |||||||||||||||  || ||||||||  ||| |||||||||||  |||||||| |||||||    
T  24617660 gttttgctgatttacataatttctcactaaaaagactcaaaacactcatgaagttacatgatttaggataaaactgaattacgacgactc 24617571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 167
Target Start/End: Original strand, 9943123 - 9943257
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||||||||||||||  |||||| ||| ||||  | |||| ||||| ||| |||||||||||  |||||||||||  ||  ||||| ||  |||||||    
T  9943123 gatttacatgatttctcaataaaaatactaaaaacacctatggagttgcatgatttaggataaaagtgaattacaacagcttgaatgataactatacaaa 9943222  T
Q  133 atgttcatcaaaggattgacaattcctctaaatga 167  Q
    || ||| ||||| ||| ||||| ||||||||||||    
T  9943223 atattcctcaaacgatggacaactcctctaaatga 9943257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 163
Target Start/End: Original strand, 14768234 - 14768372
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| ||||||||||||||||   | |||||||||||||   ||||||| ||| ||| ||||| |||||| ||||||||||  |||| |||||||      
T  14768234 gttttgccgatttacatgatttctatctgaaaagactcaaaacatttatgaaattgcatgttttagaataaatgtgaattacaataactcgaatgaaacc 14768333  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||||||||  ||| |||||  | |||||| ||||||||    
T  14768334 aatacaaaaaattcctcaaaccaatgacaactcctctaa 14768372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 32930438 - 32930580
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||||||  ||||||||||||||||  |||||||||||||||    ||| || ||| ||| || ||||||||  ||||||| ||||||||  ||| |||     
T  32930438 gttttgccaatttacatgatttctcactaaaaagactcaaaacatctatcaaattgcatgtttaaggataaaagtgaattaaaacgactcttatggaaac 32930537  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    || |||||||||||  ||||  |||||||| ||||||||||||    
T  32930538 aaaacaaaatgttccgcaaaccattgacaactcctctaaatga 32930580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 23946819 - 23946919
Alignment:
Q  36 ttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatg 135  Q
    ||||||||||| ||  |||||||||||||||  |||||||||||||  | |||  ||  || | ||||||||| |||||||||||||| |||||||||||    
T  23946819 ttacatgatttatcaataaaaagactcaaaacacttatgaagttgtcggttttgtgaagaaatagaattacaaagactcaaatgaaaacaatacaaaatg 23946918  T
Q  136 t 136  Q
    |    
T  23946919 t 23946919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 16439607 - 16439516
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaa 116  Q
    ||||| |||||||||||||||||||  |||||||||||||||  | | |||||||| ||  |||||||||||  | ||||| ||||||||||    
T  16439607 gtttttctgatttacatgatttctcactaaaaagactcaaaacacatgtgaagttgcattatttaggataaaagttaattataacgactcaa 16439516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 26499803 - 26499910
Alignment:
Q  16 tggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactca 115  Q
    |||||||| ||||||| ||||| |||||||||||  |||||| ||||| ||  | |||||| ||  ||| ||||||||||| | ||||||||||||||      
T  26499803 tggtatcttgttttgccgatttgcatgatttctcactaaaaacactcataacacctatgaaattacatgatttaggataaaatcgaattacaacgacttg 26499902  T
Q  116 aatgaaaa 123  Q
    ||||||||    
T  26499903 aatgaaaa 26499910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 26512817 - 26512904
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaa 186  Q
    ||||||||||||| || |||||||| |||||||||||||   ||||  |||||||| |||||||||||| ||| || || ||||||||    
T  26512817 tgaattacaacgaatcgaatgaaaacaatacaaaatgttacacaaaccattgacaactcctctaaatgacctcttatttgccttcaaa 26512904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 26517933 - 26518020
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaa 186  Q
    ||||||||||||| || |||||||| |||||||||||||   ||||  |||||||| |||||||||||| ||| || || ||||||||    
T  26517933 tgaattacaacgaatcgaatgaaaacaatacaaaatgttacacaaaccattgacaactcctctaaatgacctcttatttgccttcaaa 26518020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 24507624 - 24507688
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||| |||||| | |||||||| ||||||||| |||| |||||  |||||||||||||||||    
T  24507624 tgaattaaaacgacacgaatgaaaacaatacaaaaagttcctcaaactattgacaattcctctaa 24507688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 9396572 - 9396726
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||| ||||||||||  |||||||||||||||  | |||||||||| ||| ||||| |||||  |||||||| |      |||||||||     
T  9396572 gttttgccgattta-atgatttctcactaaaaagactcaaaacacatatgaagttgcatgatttagaataaagatgaattacca------aaatgaaaac 9396664  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaa 186  Q
    ||||||| |||||| |  ||  |||||  | |||||||||||| ||| || |||||||||||    
T  9396665 aatacaagatgttcctataaccattgattactcctctaaatgacctcttattttccttcaaa 9396726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 1755601 - 1755646
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    ||||||||||||| ||||||||||| ||||||||||| || |||||    
T  1755601 tgaattacaacgaatcaaatgaaaacaatacaaaatgatcctcaaa 1755646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 17860415 - 17860552
Alignment:
Q  27 tttgctgatttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaata 125  Q
    |||| ||| ||||||||||||||  || |||| |||||||   | |||| ||||| ||| |||| ||||||  | ||| |||| ||||| | ||||||||    
T  17860415 tttgttgaattacatgatttctcactacaaaacactcaaagcacgtatggagttgcatgatttaagataaaagtaaatgacaatgactcgagtgaaaata 17860514  T
Q  126 atacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||||||||| |||||  |||||||| | ||||||    
T  17860515 atacaaaatgttcctcaaaccattgacaaattctctaa 17860552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 14924383 - 14924523
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||| |||| |||||||||||||||  | |||||||||||||  | |||  | ||| ||| ||||| |||||  |||  ||||||||||| |||||| |     
T  14924383 gtttagctggtttacatgatttctcacttaaaagactcaaaacccctatataattgcatgatttagaataaaagtgaggtacaacgactcgaatgaataa 14924482  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaat 165  Q
     ||| ||| ||||| |||||  |||||||| ||||||||||    
T  14924483 gatataaattgttcctcaaaccattgacaactcctctaaat 14924523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 15575065 - 15574934
Alignment:
Q  34 atttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||||||||| |||| || |||| ||| ||||| | |||| ||||| ||| | |||| ||||  | |||||||||||||  | |||||| |||| ||     
T  15575065 atttacatgattcctcgctacaaaacacttaaaaaacctatggagttgcatgatctaggctaaaactaaattacaacgactagagtgaaaacaatataac 15574966  T
Q  133 atgttcatcaaaggattgacaattcctctaaat 165  Q
    |||||| |||||  |||||||||||||||||||    
T  15574965 atgttcctcaaac-attgacaattcctctaaat 15574934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 26070623 - 26070429
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    |||||||  ||||||||||||||||  |||||||||||||||  |||||| ||||| ||| |||| ||||||  |||||||||   |||| ||||||||     
T  26070623 gttttgccaatttacatgatttctcactaaaaagactcaaaacacttatggagttgcatgatttatgataaaactgaattacattaactcgaatgaaaac 26070524  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataaccaaaatcagaggcaaaaa 219  Q
    ||||| |||| ||| ||||| ||||||||| |||||||||||| ||| || || |||| ||| | | |||||||||| |||| || || ||||||    
T  26070523 aatactaaattttcctcaaatgattgacaactcctctaaatgacctcttatttgccttaaaatgcaaagaaaataactaaaaacatagccaaaaa 26070429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 7742835 - 7742977
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||  | |||||  ||  ||| |||||||||||  |||||||||| ||||| || |||||     
T  7742835 gttttactgatttacatgatttctcattaaaaaaactcaaaacacatatgattttacatgatttaggataaaagtgaattacaaagactcgaacgaaaac 7742934  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    |||||||||||||| |||||  |||||||| || |||||||||    
T  7742935 aatacaaaatgttcttcaaaccattgacaactcgtctaaatga 7742977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 20694789 - 20694649
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| ||||||||||||||||   |||||||||||||||  | |||| ||||| ||  ||| |||||||  |||||||||| ||||| ||||||||     
T  20694789 gttttgccgatttacatgatttcttactaaaaagactcaaaacacatatgcagttgaataatttgggataaaactgaattacaatgactcgaatgaaaac 20694690  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaat 165  Q
    ||||||||| |||| |||||  |||||||| ||||||||||    
T  20694689 aatacaaaaagttcctcaaaccattgacaaatcctctaaat 20694649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 24410956 - 24411031
Alignment:
Q  86 tttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctct 161  Q
    |||||||||||  ||||||||||||||||||||||||| |||||||||| ||| |||||  |||||||| ||||||    
T  24410956 tttaggataaaactgaattacaacgactcaaatgaaaacaatacaaaattttcctcaaaccattgacaactcctct 24411031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 19763858 - 19763969
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||||||||||||||  |||||||||||||||  |  ||||||||| ||| |||||||||||  |||| ||||  | ||||||||||||     
T  19763858 gttttgccgatttacatgatttctcactaaaaagactcaaaa--cacatgaagttgcatgatttaggataaaactgaactacattgcctcaaatgaaaac 19763955  T
Q  125 aatacaaaatgttc 138  Q
    ||||||||| ||||    
T  19763956 aatacaaaaagttc 19763969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 206
Target Start/End: Original strand, 23157815 - 23157935
Alignment:
Q  86 tttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaa-tttccttca 184  Q
    |||| ||||||  ||||||||||||||||||||||||| ||||| ||| |||| |||||  |||||||| |||||||| ||| || |||| |||||||||    
T  23157815 tttatgataaaagtgaattacaacgactcaaatgaaaacaataccaaaagttcctcaaaccattgacaactcctctaattga-cttctaattttccttca 23157913  T
Q  185 aacgtagagaaaataaccaaaa 206  Q
    || | | |||||||||| ||||    
T  23157914 aatgcaaagaaaataactaaaa 23157935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 25367735 - 25367654
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactc 114  Q
    |||||||||||||||||  |||||||||||||||  | |||||||||| ||| |||| ||||||  |||||| |||||||||    
T  25367735 gatttacatgatttctcactaaaaagactcaaaacacctatgaagttgcatgatttatgataaaactgaatttcaacgactc 25367654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 25680699 - 25680626
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    |||||||||| ||| ||||| ||||| ||||||||||||||||| | |||||| ||||||| |||||| |||||    
T  25680699 tatgaagttgcatgatttagaataaaattgaattacaacgactcgagtgaaaacaatacaatatgttcctcaaa 25680626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 18178241 - 18178132
Alignment:
Q  34 atttacatgatttctcgttaaaaagactcaaaaagcttatgaagttg-tatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    ||||||||||||||||  |||||||||| ||||  | ||||||||||  ||| |||||||||||  ||||||||||||||   |||||||  | ||||||    
T  18178241 atttacatgatttctcactaaaaagactaaaaatacctatgaagttgcaatgatttaggataaaactgaattacaacgacctgaatgaaa--actacaaa 18178144  T
Q  133 atgttcatcaaa 144  Q
    ||||||||||||    
T  18178143 atgttcatcaaa 18178132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 19331650 - 19331522
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    |||||||||||||||||   ||||||||||||||  |  ||| | ||| ||| |||||||||||  | |||||||||||||| |||||| | ||||||||    
T  19331650 gatttacatgatttctcacaaaaaagactcaaaacac--atggaattgcatgatttaggataaaactaaattacaacgactcgaatgaacacaatacaaa 19331553  T
Q  133 atgttcatcaaaggattgacaattcctctaa 163  Q
    | |||  |||||  |||||||| ||||||||    
T  19331552 aagtttctcaaacaattgacaactcctctaa 19331522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 25594665 - 25594796
Alignment:
Q  33 gatttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaa 131  Q
    |||||||||||||||||  || |||| ||||||||  | |||||||||| ||  |||||||||||  |||| |||||| |||| | |||||| |||||||    
T  25594665 gatttacatgatttctcactataaaacactcaaaacacatatgaagttgcatcatttaggataaaaatgaaatacaacaactccagtgaaaacaatacaa 25594764  T
Q  132 aatgttcatcaaaggattgacaattcctctaa 163  Q
     |||||| |||||  ||||| || ||||||||    
T  25594765 tatgttcctcaaaccattgagaaatcctctaa 25594796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 29150882 - 29150984
Alignment:
Q  35 tttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaat 134  Q
    |||||| ||||||||  |||||| ||||||||  |||||||| ||| ||| |||| ||||||  |||||||||| || |||| |||||||||||||| ||    
T  29150882 tttacaagatttctcactaaaaa-actcaaaacacttatgaaattgcatgatttaagataaaaatgaattacaatgattcaagtgaaaataatacaagat 29150980  T
Q  135 gttc 138  Q
    ||||    
T  29150981 gttc 29150984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 24517439 - 24517365
Alignment:
Q  89 aggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||||| ||||||||||||||||   |||||| ||||||| |||||| |||||  |||||||| ||||||||    
T  24517439 aggataaatgtgaattacaacgactcgggtgaaaacaatacaatatgttcctcaaaccattgacaactcctctaa 24517365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 22229952 - 22229847
Alignment:
Q  27 tttgctgatttacatgatttctcgtta-aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaata 125  Q
    |||| |||||||||||||| |||  || |||| || |||||  ||| || ||||| ||||| |||||||||  |||||||||||||||||| |||||| |    
T  22229952 tttgttgatttacatgattcctcactacaaaatacccaaaacacttgtggagttgcatggtctaggataaaactgaattacaacgactcaagtgaaaaca 22229853  T
Q  126 atacaa 131  Q
    ||||||    
T  22229852 atacaa 22229847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 12340026 - 12340118
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||||||||| ||| | ||| |||||  |||||||||| ||| ||| ||||||||||| || |||||| |||||  |||||||| ||||||||    
T  12340026 tatgaagttgcatgatctagtataaaactgaattacaatgacacaagtgaaaataatataatatgttcctcaaaccattgacaactcctctaa 12340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 30790922 - 30790827
Alignment:
Q  28 ttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaa 123  Q
    |||| ||||||||| |||| ||  |||||||||||||||  |  ||||||||| ||  |||||||||||  ||||||| |||||||||||| ||||    
T  30790922 ttgccgatttacataatttttcactaaaaagactcaaaacaccaatgaagttggataatttaggataaaactgaattataacgactcaaataaaaa 30790827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 17027615 - 17027557
Alignment:
Q  86 tttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    |||||||||||  |||||||||||||||||| |||||| ||| ||| |||||| |||||    
T  17027615 tttaggataaaagtgaattacaacgactcaagtgaaaacaattcaatatgttcctcaaa 17027557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 20083586 - 20083476
Alignment:
Q  53 aaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgac 152  Q
    ||||||||||||||  | |||| | ||| ||| ||||||||| |  ||||||||||  |||| ||| |||| |||| ||||||||| |||||  ||||||    
T  20083586 aaaaagactcaaaacacctatggaattgcatgatttaggatagaactgaattacaaatactcgaataaaaacaataaaaaatgttcctcaaactattgac 20083487  T
Q  153 aattcctctaa 163  Q
    || ||||||||    
T  20083486 aactcctctaa 20083476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 25942214 - 25942144
Alignment:
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctc 171  Q
    |||||||||||||| | ||||||||||| |||||| || |||||  |||||||| || ||||||| |||||    
T  25942214 aattacaacgactcgattgaaaataatataaaatgctcctcaaaccattgacaactcttctaaataatctc 25942144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 17382051 - 17382139
Alignment:
Q  75 aagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||||| ||| |||||||||||  |||| |||||||| |  | |||||| ||||||| |||||| |||||  |||||||| ||||||||    
T  17382051 aagttgcatgatttaggataaaagtgaaatacaacgatttgagtgaaaacaatacaatatgttcctcaaaccattgacaactcctctaa 17382139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19541210 - 19540982
Alignment:
Q  1 cctcgatcctttaattggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttg 100  Q
    ||||||||||| | ||| | |||  |||||| |||||||||||||||||  || ||||||||||||  | |||| ||||| ||| |||||||||||  ||    
T  19541210 cctcgatccttcacttgatgtcttattttgccgatttacatgatttctcactagaaagactcaaaacacctatggagttgcatgatttaggataaaactg 19541111  T
Q  101 aattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataa 200  Q
    |||||||| ||||| | |||||  ||||||||| |||| |||||  ||| |||| |||| || || |  ||  | ||||||||||| | | |||||||||    
T  19541110 aattacaatgactcgattgaaataaatacaaaaagttcctcaaaccattaacaactcctatatataaattctaattttccttcaaatgcaaagaaaataa 19541011  T
Q  201 ccaaaatcagaggcaaaaatgtcatatga 229  Q
    | |||| || |||||||||| ||||||||    
T  19541010 ctaaaaacataggcaaaaatctcatatga 19540982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 24047531 - 24047328
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||  | ||||||||  ||||| ||| ||||| || |||| ||||| ||  |||||||||||  |||||||||| ||||| ||||||||     
T  24047531 gttttgccgatttgtaggatttctcactaaaatgacccaaaatgcctatggagttgcataatttaggataaaagtgaattacaatgactcgaatgaaaac 24047432  T
Q  125 aatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaatttccttcaaacgtagagaaaataaccaaaatcagaggcaaaaatgtca 224  Q
    |||||||||||||| | |||  |||||||||| |||||||| | ||| || ||||||||||| | | | |||||||| |||| || || | ||||| |||    
T  24047431 aatacaaaatgttccttaaaccattgacaatttctctaaataacctcttattttccttcaaatgcaaataaaataactaaaaacatagcctaaaatatca 24047332  T
Q  225 tatg 228  Q
    ||||    
T  24047331 tatg 24047328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 21849047 - 21849167
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaa 132  Q
    ||||||||| |||||||  |||||||||||||||| | |||| ||||| ||| |||| ||||||  |||||||||| |||||||| ||||| ||||||||    
T  21849047 gatttacattatttctcactaaaaagactcaaaaatcctatggagttgcatgatttatgataaaactgaattacaatgactcaaa-gaaaacaatacaaa 21849145  T
Q  133 atgttcatcaaaggattgacaa 154  Q
    |||||| |||||  ||||||||    
T  21849146 atgttcctcaaaccattgacaa 21849167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 17152303 - 17152160
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaaga-ctcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaa 123  Q
    ||||||| ||||||||||||||||   |||||| | |||||||  ||||   ||||| |||  ||| ||||||  | |||||||||||||| ||||||||    
T  17152303 gttttgccgatttacatgatttcttactaaaaaaaactcaaaacacttacagagttgcatgaattacgataaaagttaattacaacgactcgaatgaaaa 17152204  T
Q  124 taatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    ||||||||||| ||| |||||  |||||||| ||||||||||||    
T  17152203 taatacaaaatattcctcaaaccattgacaactcctctaaatga 17152160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 18236268 - 18236397
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| || ||||||||||||||  |||||||||||||||  |||||| ||||| ||| |||| ||||||  ||||||| ||| |||| ||||||||     
T  18236268 gttttgccgagttacatgatttctcactaaaaagactcaaaatacttatggagttgcatgatttaagataaaagtgaattataacaactcgaatgaaaac 18236367  T
Q  125 aatacaaaatgttcatcaaaggattgacaa 154  Q
    |||| ||| ||||  |||||  ||||||||    
T  18236368 aatataaattgtttctcaaaccattgacaa 18236397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 18818846 - 18818733
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| |||||||||||||||||  |||||||||| |||| |  |||| | ||| ||| |||| ||||||  | |||| ||||||||||||||||||     
T  18818846 gttttgccgatttacatgatttctcaataaaaagactgaaaacgtctatggacttgcatgatttatgataaaactaaatttcaacgactcaaatgaaaac 18818747  T
Q  125 aatacaaaatgttc 138  Q
    |||| |||||||||    
T  18818746 aatataaaatgttc 18818733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 22388732 - 22388892
Alignment:
Q  34 atttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaa 133  Q
    ||||||||||||||||  | ||||||||||||||    ||||||||| ||| || ||||||||  || ||||||| |||||||||||||| |||| ||||    
T  22388732 atttacatgatttctcactgaaaagactcaaaaa----atgaagttgcatgattcaggataaaactggattacaatgactcaaatgaaaacaata-aaaa 22388826  T
Q  134 tgttcatcaaaggattgacaattcctctaaatgatctcctaattt-ccttcaaacgtagagaaaata 199  Q
     |||| |||||  |||||||| |||||||| ||| || ||||||| |||||||| | | ||||||||    
T  22388827 agttcctcaaattattgacaactcctctaattga-cttctaatttgccttcaaatgcaaagaaaata 22388892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 32276530 - 32276660
Alignment:
Q  76 agttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatgatctcctaa 175  Q
    ||||| ||| ||||| ||||| || |||||||| ||||| ||| |||| ||| |||||||||| |||||  |||||||  |||| ||||||| ||| ||     
T  32276530 agttgaatgatttagaataaacttcaattacaatgactcgaataaaaacaatgcaaaatgttcttcaaaccattgacatctcctttaaatgacctcttat 32276629  T
Q  176 tttccttcaaacgtagagaaaataaccaaaa 206  Q
    ||||||||||| | | |||||||||| ||||    
T  32276630 tttccttcaaatgcaaagaaaataactaaaa 32276660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 30998891 - 30998782
Alignment:
Q  54 aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgaca 153  Q
    |||| ||||||||  | |||| ||||||||| | |||||||||  |||| ||||||||||||| |||||| ||||||| |||||| |||||  |||||||    
T  30998891 aaaacactcaaaacacctatggagttgtatgatctaggataaaactgaagtacaacgactcaagtgaaaacaatacaatatgttcctcaaaccattgaca 30998792  T
Q  154 attcctctaa 163  Q
    | || |||||    
T  30998791 actcatctaa 30998782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 28278435 - 28278527
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    |||| ||||| ||| | |||||||||  |||||||||||||||||| |||||||||||||  |||||| |||||  ||||| || ||||||||    
T  28278435 tatggagttgcatgatctaggataaaagtgaattacaacgactcaagtgaaaataatacactatgttcttcaaaccattgagaaatcctctaa 28278527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 31262156 - 31262006
Alignment:
Q  16 tggtatctagttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactca 115  Q
    |||| ||| |||||||  ||||| |||| |||||  |||||||||| ||||  | | |||||||| ||||||| |||||||  |||||||||||| |       
T  31262156 tggtgtcttgttttgccaatttagatgaattctcactaaaaagacttaaaacacctgtgaagttgcatggttt-ggataaaactgaattacaacgtccag 31262058  T
Q  116 aatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    || |||||||||||||||||||  | |||  |||||||| ||||||||||||    
T  31262057 aaagaaaataatacaaaatgtttgttaaaccattgacaactcctctaaatga 31262006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 18117058 - 18117013
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    |||||||||| |||||||||||||| |||||||||||||| |||||    
T  18117058 tgaattacaatgactcaaatgaaaacaatacaaaatgttcgtcaaa 18117013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 32703900 - 32704009
Alignment:
Q  25 gttttgctgatttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaat 124  Q
    ||||||| || |||||| |||| ||  |||||||| ||||||  ||||||||||||||| |||   ||  ||   | |||||||||||||||||||||||    
T  32703900 gttttgcggaattacataatttatcaataaaaagattcaaaacacttatgaagttgtatagttagagaagaaaccggattacaacgactcaaatgaaaat 32703999  T
Q  125 aatacaaaat 134  Q
    ||||||||||    
T  32704000 aatacaaaat 32704009  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 1733186 - 1733143
Alignment:
Q  88 taggataaatttgaattacaacgactcaaatgaaaataatacaa 131  Q
    |||||||||  ||||||||||||||||||||||||| |||||||    
T  1733186 taggataaaactgaattacaacgactcaaatgaaaacaatacaa 1733143  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 19949597 - 19949639
Alignment:
Q  102 attacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    ||||||||||||||| |||||||||||||| |||||| |||||    
T  19949597 attacaacgactcaagtgaaaataatacaatatgttcctcaaa 19949639  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 27917995 - 27918053
Alignment:
Q  71 tatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatac 129  Q
    |||| ||||| ||| ||||| |||||  ||||||||||||||||||||||||| |||||    
T  27917995 tatggagttgcatgatttagtataaaagtgaattacaacgactcaaatgaaaacaatac 27918053  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 15454558 - 15454638
Alignment:
Q  86 tttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaatga 167  Q
    |||||||||||  ||||| ||||||||||||| ||||| ||||||||||| || | |||| || ||||| |||| |||||||    
T  15454558 tttaggataaaaatgaat-acaacgactcaaaagaaaacaatacaaaatgatccttaaagcatagacaactcctttaaatga 15454638  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 21843019 - 21843108
Alignment:
Q  76 agttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaaat 165  Q
    ||||| ||| |||||||||||  | |||||||| ||||| |||||||| ||||||| |||||| | |||  |||| ||| ||||||||||    
T  21843019 agttgcatgatttaggataaaagtaaattacaatgactcgaatgaaaacaatacaacatgttcctaaaaccattggcaactcctctaaat 21843108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 29647585 - 29647630
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    ||||||||||||||||||||||||| |||| |||| |||| |||||    
T  29647585 tgaattacaacgactcaaatgaaaacaatataaaaagttcctcaaa 29647630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 34063839 - 34063924
Alignment:
Q  53 aaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttc 138  Q
    ||||| ||||||||  ||| || ||||| ||| ||||||||||   ||||||||||| |||| |||||||| ||||||||| ||||    
T  34063839 aaaaaaactcaaaacacttgtggagttgcatgatttaggataatagtgaattacaacaactcgaatgaaaacaatacaaaaagttc 34063924  T

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Target: scaffold0190 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 11692 - 11805
Alignment:
Q  54 aaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgaca 153  Q
    |||||||||||||  |  ||| ||||| ||| ||||||| |||  ||||||||||||| |||||||||||  |||||||| ||||||||||  |||||||    
T  11692 aaaagactcaaaacacccatgtagttgcatgatttaggacaaaactgaattacaacgattcaaatgaaaactatacaaaaagttcatcaaatcattgaca 11791  T
Q  154 attcctctaaatga 167  Q
    | ||||||||||||    
T  11792 actcctctaaatga 11805  T

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Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 58885 - 58713
Alignment:
Q  34 atttacatgatttctcgttaaaaagactcaaaaagcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaa 133  Q
    ||||||||||||||||  ||||||||||  |||| | ||   ||||| ||| || ||||||||  || ||||||| ||| | |||||||| |||||||||    
T  58885 atttacatgatttctcactaaaaagacttgaaaaacataaagagttgcatgattcaggataaacctggattacaatgacccgaatgaaaacaatacaaaa 58786  T
Q  134 tgttcatcaaaggattgacaattcctctaaatgatctcctaattt-ccttcaaacgtagagaaaataaccaaaa 206  Q
     |||| |||||  |||||||| |||||| | ||| || ||||||| |||||||| | | |||||||||||||||    
T  58785 agttcctcaaaccattgacaactcctctgattga-cttctaatttgccttcaaatgcatagaaaataaccaaaa 58713  T

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Target: scaffold0185 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 1584 - 1435
Alignment:
Q  33 gatttacatgatttctcgttaaaaagactcaaaa-agcttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaa 131  Q
    |||||||||||||| || | |||||||||| ||| | ||| ||| |||| ||| || | ||||||  ||||||| || || || |||||||| |||||||    
T  1584 gatttacatgatttttcataaaaaagactcgaaacatcttttga-gttgcatgattaatgataaaagtgaattaaaatgaatcgaatgaaaacaatacaa 1486  T
Q  132 aatgttcatcaaaggattgacaattcctctaaatgatctcctaatttcctt 182  Q
    |||| || |||||  |||||||| |||||||||||| ||| || |||||||    
T  1485 aatgctcctcaaaatattgacaactcctctaaatgacctcttattttcctt 1435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 21501 - 21427
Alignment:
Q  70 ttatgaagttgtatggtttaggataaatttgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaa 144  Q
    ||||||||||| ||| |||||||||||  |||||||||||||||| | |||||| ||||||| | |||| |||||    
T  21501 ttatgaagttgcatgatttaggataaaagtgaattacaacgactcgagtgaaaacaatacaataagttcctcaaa 21427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 1741 - 1677
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||| |||||| | |||||||| ||||||||| |||| |||||  |||||||||||||||||    
T  1741 tgaattaaaacgacacgaatgaaaacaatacaaaaagttcctcaaactattgacaattcctctaa 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 12177 - 12113
Alignment:
Q  99 tgaattacaacgactcaaatgaaaataatacaaaatgttcatcaaaggattgacaattcctctaa 163  Q
    ||||||| |||||| | |||||||| ||||||||| |||| |||||  |||||||||||||||||    
T  12177 tgaattaaaacgacacgaatgaaaacaatacaaaaagttcctcaaactattgacaattcctctaa 12113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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