View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_high_3 (Length: 574)
Name: NF8961_high_3
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 10516969 - 10517492
Alignment:
| Q |
18 |
gtgcagctatttgatgttataggcttgttaaaccttaattatgaatttctgatatgtttaaagttctaaataattttataaccttaatgtccagaaattc |
117 |
Q |
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| T |
10516969 |
gtgcagctatttgatgttataggcttgttaaaccttaattatgaatatctgatatgtttaaagttctaaataattttataaccttaatgtc--------- |
10517059 |
T |
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| Q |
118 |
taccaattgtccagaaatttagtgttttaggtaaaaggagacattgtattagacaagaattcctcaatgatttttcatatgaatttactgatattgcagg |
217 |
Q |
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| T |
10517060 |
-----------cagaaatttagcgttttaggtaaaaggagacattgtattagacaagaattcctcaatgatttttcatatgaatttactgatattgcagg |
10517148 |
T |
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| Q |
218 |
atcctatgatgaattacatccaccaaacactatggaacttttgaacatgtaattagaaaagaggagatcactcaatttaatgattgatggcactaatctc |
317 |
Q |
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| T |
10517149 |
atcctatgatgaattacatccaccaaacactatggaacttttgaacatgtaattagaaaagaggagatcactcaatttaatgattgatggcactaatctc |
10517248 |
T |
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| Q |
318 |
tgagcttttggctagtgtaatgatattggtgacaaggggtttctctatgcttaaggaggcatgcttgtttcctatcagaattggattagttgtcatttac |
417 |
Q |
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| T |
10517249 |
tgagcttttggctagtgtaatgatattggtgacaaggggtttctctatgcttaaggaggcatgcttgtttcctatcagaattggattagttgtcatttac |
10517348 |
T |
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| Q |
418 |
acttggacagagttgattaggactgcagtaatctttaatgtgaacatagtattgggaattatctcatggacaattggacttatcttcttacctgtaagag |
517 |
Q |
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| T |
10517349 |
acttggacagagttgattaggactgcaataatctttaatgtgaacatagtattgggaattatctcatggacaattggacttatcttcttacctgtaagag |
10517448 |
T |
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| Q |
518 |
ctgtgaatgccattcaaagggagagacaggttagttctcattct |
561 |
Q |
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| T |
10517449 |
ctgtgaatgccattcaaagggagagacaggttagttctcattct |
10517492 |
T |
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