View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_high_6 (Length: 465)
Name: NF8961_high_6
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 157 - 456
Target Start/End: Complemental strand, 44830880 - 44830581
Alignment:
| Q |
157 |
cataagcaaaaagaagacatgacgaaggctgtacaatcggttcagccatcgtcggaacaccaccttcatcattgaccgttgcattttgttgtagtcgaac |
256 |
Q |
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| T |
44830880 |
cataagcaaaaagaagacatgacgaaggctgtacaatcggttcagccatcgtcggaacaccaccttcatcattgaccgttgcattttgttgtagtcgaac |
44830781 |
T |
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| Q |
257 |
ctccatcgcttgtttaatttacacaagtcatgtattacattgtctgcaagttcatattaatgtaggagatgtggatacatcggctgccaatctaatcatt |
356 |
Q |
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| T |
44830780 |
ctccatcgcttgtttaatttacacaagtcatgtattacattgtctgcaagttcatattaatgtaggagatgtggatacatcggctgccaatctaatcatt |
44830681 |
T |
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| Q |
357 |
gttgagcaaagtcgcctatatcgttgtgttatagatgatttgggatcttccacaacctcatttctccttgcatcatgtataataccatgatgtccatctc |
456 |
Q |
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| T |
44830680 |
gttgagcaaagtcgcctatatcgttgtgttatagatgatttgggatcttccacaacctcatttctccttgcatcatgtataataccactatgtgcatctc |
44830581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 44831036 - 44830913
Alignment:
| Q |
18 |
caacaaaaatgtagtaaagcttttgattgcaaaagnnnnnnnnnnngcaaatgatgagaaagatagaacatgcggtcaaacgtttagtacatgttgatga |
117 |
Q |
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| T |
44831036 |
caacaaaaatgtagtaaagcttttgattgcaaaagaaaaaaaaa--gcaaatgatgagaaagatagaacatgcggtcaaacgtttagtacatgttgatga |
44830939 |
T |
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| Q |
118 |
gaaaagataacaatagaacatgtcac |
143 |
Q |
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| T |
44830938 |
gaaaagataacaatagaacatgtcac |
44830913 |
T |
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