View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_low_1 (Length: 1102)

Name: NF8961_low_1
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_low_1
NF8961_low_1
[»] chr8 (24 HSPs)
chr8 (10-1072)||(44140616-44141679)
chr8 (466-636)||(13384656-13384819)
chr8 (525-636)||(32927864-32927975)
chr8 (519-629)||(38868464-38868574)
chr8 (530-635)||(4662906-4663011)
chr8 (519-636)||(37684371-37684488)
chr8 (539-609)||(38537387-38537457)
chr8 (528-611)||(36200159-36200242)
chr8 (504-610)||(26668503-26668609)
chr8 (530-592)||(41318825-41318887)
chr8 (551-636)||(26100148-26100233)
chr8 (551-629)||(15677824-15677903)
chr8 (553-628)||(35494990-35495065)
chr8 (531-604)||(10367973-10368046)
chr8 (441-500)||(10367896-10367955)
chr8 (551-620)||(7244619-7244688)
chr8 (528-636)||(16972066-16972174)
chr8 (504-568)||(35525363-35525427)
chr8 (504-623)||(463128-463247)
chr8 (551-622)||(32994258-32994329)
chr8 (441-520)||(35494916-35494995)
chr8 (551-636)||(18355852-18355935)
chr8 (641-711)||(29512900-29512970)
chr8 (536-588)||(1836262-1836315)
[»] chr4 (37 HSPs)
chr4 (10-1075)||(50061193-50062256)
chr4 (528-628)||(32818380-32818480)
chr4 (445-620)||(35064962-35065130)
chr4 (504-636)||(9064182-9064314)
chr4 (509-629)||(49138772-49138891)
chr4 (528-629)||(26617443-26617544)
chr4 (442-680)||(21691160-21691409)
chr4 (530-612)||(55186988-55187070)
chr4 (442-636)||(16551853-16552038)
chr4 (551-623)||(8604637-8604709)
chr4 (509-629)||(53913586-53913706)
chr4 (528-626)||(30472909-30473007)
chr4 (449-592)||(46344878-46345013)
chr4 (519-610)||(9134576-9134667)
chr4 (519-686)||(39733582-39733756)
chr4 (519-636)||(39386599-39386716)
chr4 (441-580)||(49138894-49139025)
chr4 (555-636)||(52965856-52965937)
chr4 (530-629)||(41370021-41370118)
chr4 (504-620)||(43868087-43868203)
chr4 (535-593)||(11271582-11271641)
chr4 (528-585)||(25319022-25319080)
chr4 (530-604)||(30889764-30889838)
chr4 (528-604)||(18597014-18597091)
chr4 (528-625)||(20712827-20712924)
chr4 (441-498)||(33456269-33456326)
chr4 (441-502)||(33843586-33843647)
chr4 (572-637)||(45011893-45011958)
chr4 (551-623)||(30357510-30357582)
chr4 (536-568)||(33843661-33843693)
chr4 (637-688)||(9134708-9134759)
chr4 (533-604)||(25927288-25927359)
chr4 (523-629)||(31012747-31012854)
chr4 (531-604)||(2206377-2206451)
chr4 (528-636)||(22683838-22683947)
chr4 (519-636)||(53713563-53713680)
chr4 (437-478)||(56013913-56013954)
[»] scaffold0168 (1 HSPs)
scaffold0168 (441-608)||(31721-31881)
[»] chr6 (24 HSPs)
chr6 (441-688)||(4910803-4911053)
chr6 (453-628)||(3481946-3482121)
chr6 (435-610)||(5724658-5724826)
chr6 (528-626)||(6654102-6654200)
chr6 (445-636)||(25195368-25195550)
chr6 (538-622)||(7952725-7952809)
chr6 (528-636)||(16540082-16540190)
chr6 (528-636)||(1485148-1485256)
chr6 (551-610)||(6895978-6896037)
chr6 (529-636)||(26280581-26280688)
chr6 (528-602)||(765422-765496)
chr6 (528-609)||(2234490-2234571)
chr6 (632-686)||(4908051-4908105)
chr6 (533-609)||(852512-852588)
chr6 (471-573)||(2008403-2008498)
chr6 (528-604)||(10400729-10400805)
chr6 (530-561)||(24974192-24974223)
chr6 (530-636)||(434239-434345)
chr6 (551-629)||(25195848-25195926)
chr6 (530-636)||(34620863-34620969)
chr6 (530-636)||(34748300-34748406)
chr6 (530-568)||(35098244-35098282)
chr6 (532-588)||(10564974-10565031)
chr6 (576-629)||(17225875-17225928)
[»] chr2 (23 HSPs)
chr2 (522-688)||(33019096-33019272)
chr2 (441-611)||(30503104-30503267)
chr2 (528-637)||(10644578-10644687)
chr2 (506-636)||(11504064-11504193)
chr2 (441-500)||(33047683-33047742)
chr2 (528-610)||(2002723-2002805)
chr2 (528-634)||(31453358-31453464)
chr2 (544-609)||(42740968-42741033)
chr2 (532-636)||(16518758-16518861)
chr2 (523-629)||(22535968-22536074)
chr2 (519-628)||(3352042-3352151)
chr2 (534-636)||(42982523-42982627)
chr2 (529-636)||(33502223-33502320)
chr2 (504-629)||(12037012-12037137)
chr2 (551-636)||(26032037-26032122)
chr2 (551-615)||(43501123-43501187)
chr2 (528-563)||(1976940-1976975)
chr2 (530-568)||(680347-680385)
chr2 (529-571)||(32777946-32777988)
chr2 (556-629)||(5533040-5533113)
chr2 (441-498)||(7629757-7629814)
chr2 (527-604)||(21659693-21659770)
chr2 (528-588)||(37561681-37561742)
[»] chr5 (26 HSPs)
chr5 (530-688)||(42858085-42858253)
chr5 (445-610)||(11647981-11648139)
chr5 (533-624)||(14299310-14299401)
chr5 (536-637)||(9818717-9818819)
chr5 (551-636)||(6951307-6951392)
chr5 (546-635)||(38845436-38845525)
chr5 (441-686)||(18851024-18851272)
chr5 (519-637)||(28110439-28110557)
chr5 (441-498)||(38845644-38845701)
chr5 (504-580)||(27374349-27374425)
chr5 (530-636)||(42439619-42439726)
chr5 (528-610)||(34250379-34250461)
chr5 (519-629)||(36290001-36290111)
chr5 (533-629)||(13171769-13171866)
chr5 (441-624)||(22226250-22226426)
chr5 (528-609)||(36639912-36639993)
chr5 (551-627)||(39097244-39097320)
chr5 (529-581)||(43268467-43268519)
chr5 (533-636)||(31906239-31906342)
chr5 (509-629)||(5468729-5468850)
chr5 (551-629)||(18637282-18637358)
chr5 (528-604)||(1105414-1105492)
chr5 (441-498)||(3043137-3043194)
chr5 (536-565)||(22572511-22572540)
chr5 (509-558)||(29922582-29922631)
chr5 (528-593)||(32980519-32980583)
[»] chr1 (32 HSPs)
chr1 (441-636)||(28083890-28084078)
chr1 (554-688)||(30557505-30557647)
chr1 (528-636)||(6021779-6021887)
chr1 (560-636)||(7524120-7524196)
chr1 (529-636)||(38797631-38797738)
chr1 (530-636)||(3016140-3016245)
chr1 (555-636)||(11049252-11049333)
chr1 (527-629)||(1514317-1514419)
chr1 (529-604)||(31362239-31362310)
chr1 (442-690)||(2099625-2099873)
chr1 (551-636)||(7790644-7790729)
chr1 (437-615)||(36780139-36780311)
chr1 (519-636)||(47321909-47322025)
chr1 (540-604)||(48549046-48549110)
chr1 (511-629)||(3416038-3416156)
chr1 (519-621)||(34387710-34387812)
chr1 (533-647)||(50571264-50571377)
chr1 (509-624)||(34721854-34721966)
chr1 (554-636)||(30850401-30850483)
chr1 (528-626)||(50569655-50569753)
chr1 (528-610)||(51500862-51500939)
chr1 (566-687)||(4887718-4887837)
chr1 (551-628)||(28287346-28287423)
chr1 (533-609)||(10324967-10325043)
chr1 (519-610)||(3909827-3909918)
chr1 (436-498)||(15478134-15478196)
chr1 (538-620)||(33733954-33734036)
chr1 (529-581)||(5268194-5268247)
chr1 (441-498)||(8130853-8130910)
chr1 (533-622)||(15986237-15986326)
chr1 (575-636)||(34915088-34915149)
chr1 (441-502)||(45660878-45660938)
[»] chr7 (17 HSPs)
chr7 (504-635)||(41386818-41386949)
chr7 (533-636)||(40491558-40491661)
chr7 (533-610)||(15903558-15903635)
chr7 (509-609)||(27571818-27571918)
chr7 (509-608)||(22195820-22195919)
chr7 (516-626)||(35772221-35772331)
chr7 (530-609)||(28725081-28725160)
chr7 (528-609)||(5489875-5489956)
chr7 (528-585)||(36270955-36271012)
chr7 (528-588)||(40422767-40422828)
chr7 (528-604)||(44856843-44856917)
chr7 (529-609)||(30182325-30182404)
chr7 (441-498)||(46325570-46325627)
chr7 (533-637)||(25156176-25156284)
chr7 (530-568)||(45004997-45005035)
chr7 (551-592)||(17111855-17111896)
chr7 (551-636)||(38123668-38123753)
[»] chr3 (25 HSPs)
chr3 (441-610)||(25359602-25359763)
chr3 (516-626)||(40736550-40736659)
chr3 (509-607)||(54596774-54596872)
chr3 (439-502)||(52141374-52141437)
chr3 (528-629)||(32523349-32523451)
chr3 (441-498)||(1290676-1290733)
chr3 (551-636)||(52364049-52364134)
chr3 (528-592)||(7717367-7717431)
chr3 (528-637)||(35058336-35058446)
chr3 (533-609)||(37335063-37335139)
chr3 (529-629)||(44771670-44771770)
chr3 (528-595)||(1441424-1441491)
chr3 (531-626)||(35264423-35264518)
chr3 (441-498)||(3845245-3845302)
chr3 (441-498)||(52363960-52364017)
chr3 (528-636)||(36302158-36302266)
chr3 (511-559)||(48410891-48410939)
chr3 (529-568)||(30301069-30301108)
chr3 (551-606)||(35058065-35058120)
chr3 (528-587)||(41115413-41115472)
chr3 (574-636)||(31708241-31708303)
chr3 (538-636)||(40147852-40147950)
chr3 (528-626)||(47356257-47356355)
chr3 (528-568)||(38022410-38022451)
chr3 (532-609)||(44958635-44958712)
[»] scaffold0314 (1 HSPs)
scaffold0314 (442-498)||(17322-17378)
[»] scaffold0197 (1 HSPs)
scaffold0197 (441-502)||(31544-31605)


Alignment Details
Target: chr8 (Bit Score: 960; Significance: 0; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 960; E-Value: 0
Query Start/End: Original strand, 10 - 1072
Target Start/End: Complemental strand, 44141679 - 44140616
Alignment:
Q  10 agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141679 agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga 44141580  T
Q  110 tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaatnnnnnnnnnnnn-tcaagaaaggccaagctaaatgagct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||    
T  44141579 tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaaatcaagaaaggccaagctaaatgagct 44141480  T
Q  209 cagattctatcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttagaattcgctataagcttcaaaaggttggatttctttgtaatact 308  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  44141479 cagattctttcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttaggattcgctataagcttgaaaaggttggatttctttgtaatact 44141380  T
Q  309 aatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaatttta 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44141379 aatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttataggacaatttta 44141280  T
Q  409 cccgtttgcttgtattcttgtacgtctttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttcta 508  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44141279 cccgttagcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttcta 44141180  T
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  44141179 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcaca 44141080  T
Q  609 cataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctccccactaaactaccaaaca 708  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44141079 cataattttatagttcaactcgcttttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccactaaactaccaaaca 44140980  T
Q  709 cacacatgtaattgtatattctctagttttttcatgaatagcaaatgttagtatcagggtcgggatcgaaaactctccctccttatcggtccattcctta 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44140979 cacacatgtaattgtatattctctagttttttcatgaatagcaaatgttagcatcagggtcggtatcgaaaactctccctccttatcggtccattcctta 44140880  T
Q  809 actctcccatcccaaccttacattttctagttctgtaataattgtttgagtatttttctgataatatgcgaagttatattttttatgaaaacatttattc 908  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140879 actctcccatcccaaccttacattttctagttctgtaataattgtttgagtatttttctgataatatgcgaagttatattttttatgaaaacatttattc 44140780  T
Q  909 tttgatgcttgaatggaagttagttctgttaaccttgcttagaaataatataatagtatattcagttggatatcagatatctttctgttttaactttgct 1008  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  44140779 tttgatgcttgaatggaagttagttctgttaaccttgcttagaaataatataatagtatattcagttggatatcagatatctttctgttttaacttagtt 44140680  T
Q  1009 atggtatattatattcacacgcatacattatttaggtctgatgtcttctttcacccttgaattt 1072  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44140679 atggtatattatattcacacgcatacattatttaggtctgatgtcttctttcacccttgaattt 44140616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 466 - 636
Target Start/End: Complemental strand, 13384819 - 13384656
Alignment:
Q  466 accaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttg 565  Q
    |||| |||||||||||||||| |||||||||||||||       ||||| || |||||||| ||| |||||  || |  ||||||||||||||||| |||    
T  13384819 accataattgattttggaggtgtagaattgattctga-------catgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttg 13384727  T
Q  566 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||| ||  ||||||| |||||||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  13384726 aagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcactttta 13384656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 525 - 636
Target Start/End: Original strand, 32927864 - 32927975
Alignment:
Q  525 tccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 624  Q
    ||||||||||||||||||||||| | | |||||||||||||||| ||||||||||| ||||||||| |||| || ||||| ||||| || ||||||||||    
T  32927864 tccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttc 32927963  T
Q  625 aactcgctttta 636  Q
    ||||| ||||||    
T  32927964 aactcactttta 32927975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 519 - 629
Target Start/End: Original strand, 38868464 - 38868574
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||||| |||| |||||||  |||||| |||||||||||||||||||| || |||||||| |||||| ||||| | |||||||||||||| || ||||    
T  38868464 ttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaattta 38868563  T
Q  619 tagttcaactc 629  Q
    |||||||||||    
T  38868564 tagttcaactc 38868574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 530 - 635
Target Start/End: Complemental strand, 4663011 - 4662906
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||||||||||| |||  |||| ||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| || | |||||||||||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactc 4662912  T
Q  630 gctttt 635  Q
    ||||||    
T  4662911 gctttt 4662906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 519 - 636
Target Start/End: Original strand, 37684371 - 37684488
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||| | |||||||| |  || || ||||    
T  37684371 ttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaattta 37684470  T
Q  619 tagttcaactcgctttta 636  Q
    || |||||||| ||||||    
T  37684471 taattcaactcactttta 37684488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 539 - 609
Target Start/End: Complemental strand, 38537457 - 38537387
Alignment:
Q  539 ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||| ||||||||||||||||||||||||    
T  38537457 ttttgcctccaaaattgtttctacttgaagctagaaactgtaccttctgattctagagttgattttcacac 38537387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 528 - 611
Target Start/End: Complemental strand, 36200242 - 36200159
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 611  Q
    |||||||||| || || ||||| ||||||||| ||||||||||| |||||||   ||||||||||||| |||||||||||||||    
T  36200242 agtagaattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 36200159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 504 - 610
Target Start/End: Original strand, 26668503 - 26668609
Alignment:
Q  504 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 603  Q
    ||||||||||| ||||| ||||| ||||||||||||| |||||||| |||||||||||||| ||  ||  |||||||  |||| |||||| | ||||||     
T  26668503 ttctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattctataattgattc 26668602  T
Q  604 tcacaca 610  Q
    |||||||    
T  26668603 tcacaca 26668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 530 - 592
Target Start/End: Complemental strand, 41318887 - 41318825
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 592  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||    
T  41318887 tagaatttattttgcctttaaaattgattctacttgaagttagaatttgtacattttgattct 41318825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 26100233 - 26100148
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||| | |||||||| ||||| || ||||| ||||||||| ||||||    
T  26100233 aattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcactttta 26100148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 551 - 629
Target Start/End: Complemental strand, 15677903 - 15677824
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactc 629  Q
    |||||||||||||||||| |||||||| || ||||||||| |||| |||| |||| ||||| || |||||||||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaactc 15677824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 553 - 628
Target Start/End: Original strand, 35494990 - 35495065
Alignment:
Q  553 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| ||| |||| ||||| || | ||||||||||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaact 35495065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 531 - 604
Target Start/End: Original strand, 10367973 - 10368046
Alignment:
Q  531 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    ||||||||||| ||||||| ||||| |||||||||| | ||||||||| | |||||||||||||| || |||||    
T  10367973 agaattgatttcgcctccacaattggttctacttgaggctaggatttgcagcttttgattctagaattcatttt 10368046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 441 - 500
Target Start/End: Original strand, 10367896 - 10367955
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 500  Q
    |||||||||||| |||||||||||  |||||||||||| ||||| | |||||||||||||    
T  10367896 tatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgattct 10367955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 551 - 620
Target Start/End: Complemental strand, 7244688 - 7244619
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 620  Q
    |||||||||||||||||  || ||| ||||  ||||||||||||| ||||||||||| || |||||||||    
T  7244688 aattgattctacttgaaactaagatatgtagtttttgattctagaattgattttcacgcacaattttata 7244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 636
Target Start/End: Complemental strand, 16972174 - 16972066
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    ||||||||||||||||||| || | |||||| || |||||| ||| |||||||  |||| ||| |||| |||||||| | ||| || ||||| ||||||     
T  16972174 agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaa 16972075  T
Q  628 tcgctttta 636  Q
    || ||||||    
T  16972074 tcactttta 16972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 504 - 568
Target Start/End: Original strand, 35525363 - 35525427
Alignment:
Q  504 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 568  Q
    |||| |||||| ||||||||||| ||||||||||||| | || ||| |||||||| |||||||||    
T  35525363 ttctgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaag 35525427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 504 - 623
Target Start/End: Complemental strand, 463247 - 463128
Alignment:
Q  504 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 603  Q
    |||||| |||| || |||||||| ||||||||||||||||  |  | |||| |||||| |||||  || ||||||||  || |||||||||| || ||||    
T  463247 ttctaatatgtttggttgttgtctagtagaattgattttgtttttagaattaattctatttgaaactaagatttgtagtttatgattctagaatttattt 463148  T
Q  604 tcacacataattttatagtt 623  Q
    ||||| | || |||||||||    
T  463147 tcacaaagaaatttatagtt 463128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 551 - 622
Target Start/End: Complemental strand, 32994329 - 32994258
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 622  Q
    |||||||||||||||||| || ||||| || ||||||| |||||| |||||||| | ||| || ||||||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagt 32994258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 35494916 - 35494995
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgatt 520  Q
    ||||||||| |||||||||| |||  |||  ||||||| |||||||  | |||||||||| ||||||||||||| |||||    
T  35494916 tatgtttgggtccacttctaaaggggccatgattgattctggaggtgcacaattgattcttagttctaacatgtttgatt 35494995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 18355935 - 18355852
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||||||||||  |||||| ||||||||||  |||||||||||| | |||||||| ||||  || |||| |||||||||| ||||||    
T  18355935 aattgattctgattgaagctaggatttgtgtcttttgattctaaaattgatttttacac--aaatttaaagttcaactccctttta 18355852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 641 - 711
Target Start/End: Original strand, 29512900 - 29512970
Alignment:
Q  641 aacacaattcacctttagtcagaatcacttttacccaaaatcaattctccccactaaactaccaaacacac 711  Q
    ||||||| |||  |||||||| ||||||||||| |||||||||||||||| |||   || |||||||||||    
T  29512900 aacacaaatcagttttagtcaaaatcacttttaaccaaaatcaattctccacaccgcacaaccaaacacac 29512970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 588
Target Start/End: Complemental strand, 1836315 - 1836262
Alignment:
Q  536 tgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 588  Q
    |||||||||||| |||||||||||| |||||||| |||||| |||| |||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 958; Significance: 0; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 958; E-Value: 0
Query Start/End: Original strand, 10 - 1075
Target Start/End: Complemental strand, 50062256 - 50061193
Alignment:
Q  10 agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50062256 agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga 50062157  T
Q  110 tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaatnnnnnnnnnnnntcaagaaaggccaagctaaatgagctc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  50062156 tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaatcaagaaaggccaagctaaatgagctc 50062057  T
Q  210 agattctatcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttagaattcgctataagcttcaaaaggttggatttctttgtaatacta 309  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  50062056 agattctttcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttaggattcgctataagcttgaaaaggttggatttctttgtaatacta 50061957  T
Q  310 atttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061956 atttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttac 50061857  T
Q  410 ccgtttgcttgtattcttgtacgtctttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaa 509  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50061856 ccgtttgcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttctaa 50061757  T
Q  510 catgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  50061756 catgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacac 50061657  T
Q  610 ataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctccccactaaactaccaaacac 709  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  50061656 ataattttatggttcaactcgcttttatccaaacacaattca-ctttagtcagaatcacttttaaccaaaatcaattctccccactgaactaccaaacac 50061558  T
Q  710 acacatgtaattgtatattctctagttttttcatgaatagcaaatgttagtatcagggtcgggatcgaaaactctccctccttatcggtccattccttaa 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061557 acacatgtaattgtatattctctagttttttcatgaatagcaaatgttagtttcagggtcgggatcgaaaactctccctccttatcggtccattccttaa 50061458  T
Q  810 ctctcccatcccaaccttacattttctagttctgtaataattgtttgagtatttttctgataatatgcgaagttatattttttatgaaaacatttattct 909  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  50061457 ctctcccatcccaaccttacattttctagttctgtaataattgtttgagtatttttctgataatatgcgaagttatatttttaatgaaaacattta-tct 50061359  T
Q  910 ttgatgcttgaatggaagttagttctgttaaccttgcttagaaataatataatagtatattcagttggatatcagatatctttctgttttaactttgcta 1009  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  50061358 ttgatgcttgaatggaagttagttctgttaaccttgcttagaaataatataatagtatattcagttggatatcagatatctttctgttttaacttagtta 50061259  T
Q  1010 tggtatattatattcacacgcatacattatttaggtctgatgtcttctttcacccttgaattttcc 1075  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061258 tggtatattatattcacacgcatacattatttaggtctgatgtcttctttcacccttgaattttcc 50061193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 528 - 628
Target Start/End: Complemental strand, 32818480 - 32818380
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||| ||||||||  |||| || |||||||||||||    
T  32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaac 32818381  T
Q  628 t 628  Q
    |    
T  32818380 t 32818380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 445 - 620
Target Start/End: Original strand, 35064962 - 35065130
Alignment:
Q  445 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 544  Q
    ||||||||||||||| ||||   ||||||||||| ||||||| ||||||||||| |||       ||| | || ||| | || |||||||||||||||||    
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatga-------catttttggttgctttcgagtagaattgattttgc 35065054  T
Q  545 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 620  Q
    ||| | |||||||| ||||||||| ||| ||||||  |||||||||||||| |||||||| ||||| || ||||||    
T  35065055 ctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttata 35065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 504 - 636
Target Start/End: Original strand, 9064182 - 9064314
Alignment:
Q  504 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 603  Q
    ||||||||||| || |||||||| | ||||||| | |||||| ||| |||||||||||||||||  ||| |||||||  ||||||||||||| |||||||    
T  9064182 ttctaacatgtttggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattt 9064281  T
Q  604 tcacacataattttatagttcaactcgctttta 636  Q
    ||||||  || ||||  ||||||||| ||||||    
T  9064282 tcacactcaagtttacggttcaactcactttta 9064314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 509 - 629
Target Start/End: Complemental strand, 49138891 - 49138772
Alignment:
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 608  Q
    |||||| || ||||| || |||| ||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||| | |||||||| | |    
T  49138891 acatgtttggttgttttcaagtaaaattgattttgcctccaaactt-attctacttgaagctaggatttgtaacttttgattctaaaattgatttttata 49138793  T
Q  609 cataattttatagttcaactc 629  Q
    || ||  ||||||||||||||    
T  49138792 cacaagcttatagttcaactc 49138772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 528 - 629
Target Start/End: Original strand, 26617443 - 26617544
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| || |||| ||||||||| || | |||||||| | | |||| |||||| ||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattataaaattgatttttatagataaatttataattcaac 26617542  T
Q  628 tc 629  Q
    ||    
T  26617543 tc 26617544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 442 - 680
Target Start/End: Complemental strand, 21691409 - 21691160
Alignment:
Q  442 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattga--- 538  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||       |||| | || |||||||| ||||| |||||       
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctg-------acatatttggttgttgtcgagtagtattgattc 21691317  T
Q  539 -----ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctt 633  Q
         ||||| |   | ||||||||| |||||||  || |||||||| |||||| || |||| |||||||||||||| || ||||||||||||| | |||    
T  21691316 tacttttttgacagaagaattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacactt 21691217  T
Q  634 t----------tatccaaacacaattcacctttagtcagaatcacttttacccaaaa 680  Q
    |          ||||||||||||| |||| | |||||||||||||||||| ||||||    
T  21691216 ttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 530 - 612
Target Start/End: Complemental strand, 55187070 - 55186988
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacata 612  Q
    ||||||| ||| | ||| || |||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||    
T  55187070 tagaattaattctaccttcagaattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacata 55186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 442 - 636
Target Start/End: Original strand, 16551853 - 16552038
Alignment:
Q  442 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattt 541  Q
    ||||||||||||||||  ||||  | ||||||||||||| ||||| |||||||||||||||       ||||| || ||| |||| | ||||  |||||     
T  16551853 atgtttggttccactttcagagagatcaaaattgattttagaggtgtagaattgattctga-------catgtatggttgctgtcgaatagagctgattc 16551945  T
Q  542 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    |||||| |  || |||||| ||||||| |||||||||||  ||||  ||||||| |||||||||||||  || ||||||||||||||| ||||||    
T  16551946 tgcctctaggatggattctccttgaagctaggatttgtagtttttagttctagaattgattttcacac--aaatttatagttcaactcactttta 16552038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 551 - 623
Target Start/End: Complemental strand, 8604709 - 8604637
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagtt 623  Q
    |||||||||||||||||| || |||||||| |||| ||||||||| |||||||||||||| || |||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagtt 8604637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 509 - 629
Target Start/End: Complemental strand, 53913706 - 53913586
Alignment:
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 608  Q
    |||||| || |||||||| |||||||||||||||||||  | |||||||| ||||| ||| || ||||| |   || |||||||| | ||||||||||||    
T  53913706 acatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgattctataattgattttcaca 53913607  T
Q  609 cataattttatagttcaactc 629  Q
    ||||| ||||||||| |||||    
T  53913606 cataaatttatagttaaactc 53913586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 528 - 626
Target Start/End: Original strand, 30472909 - 30473007
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 626  Q
    ||||||||| |||||  || ||||||||||| ||||| ||||||| |||||||  |||||||| |||| |||||||||||| |||  ||||||||||||    
T  30472909 agtagaattaattttatcttcaaaattgattttacttcaagttagaatttgtagtttttgattttagaattgattttcacatatatatttatagttcaa 30473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 449 - 592
Target Start/End: Complemental strand, 46345013 - 46344878
Alignment:
Q  449 gttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctcc 548  Q
    ||||||||||||||||  |||||||||||| ||||||| || |||| |||||||       ||||| || ||| | || |||| ||||||||||||||||    
T  46345013 gttccacttctagagggcccaaaattgattatggaggtgtataattaattctga-------catgtttggttgctttcaagtataattgattttgcctcc 46344921  T
Q  549 aaaattgattctacttgaagttaggatttgtaccttttgattct 592  Q
    | |||| ||||||||||||||||| ||||  | |||||||||||    
T  46344920 ataatt-attctacttgaagttagaatttccagcttttgattct 46344878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 519 - 610
Target Start/End: Original strand, 9134576 - 9134667
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    ||||| || ||| ||||||||||| | |||| ||||||| |||||||||| ||  ||||||| ||||||||| |||| ||||||||||||||    
T  9134576 ttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacaca 9134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 519 - 686
Target Start/End: Complemental strand, 39733756 - 39733582
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    ||||| || |||| |||| ||| |||||||| ||||||||||||||| |||||  ||||||| ||||||||| |||| |||||| ||||||| |  ||||    
T  39733756 ttgttatcaagtataatttattctgcctccataattgattctacttg-agttacaatttgtagcttttgattgtagaattgattatcacacaca--ttta 39733660  T
Q  619 tagttcaactcgcttt----------tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 686  Q
     ||||||||||  |||          ||||||||||||| |||| |||| ||||||| ||||||| ||||||||||||    
T  39733659 aagttcaactccttttttcataaatgtatccaaacacaaatcacttttaatcagaattacttttaaccaaaatcaatt 39733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 519 - 636
Target Start/End: Original strand, 39386599 - 39386716
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||| | ||||||||||||| || ||| |||||||||||||||| ||| ||  |||| || | ||| |||||| | |||||||||||||| |  ||||    
T  39386599 ttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataattgattttcacacacatattta 39386698  T
Q  619 tagttcaactcgctttta 636  Q
     |||||||||| ||||||    
T  39386699 aagttcaactcactttta 39386716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 441 - 580
Target Start/End: Complemental strand, 49139025 - 49138894
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 540  Q
    |||||||||||||||||||| ||   |||||||||||| | ||||| ||||||||||||||       |||||| || ||||| || |||| ||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctg-------acatgtttggttgttttcaagtaaaattgatt 49138933  T
Q  541 ttgcctccaaaattgattctacttgaagttaggatttgta 580  Q
     ||||| |||  ||| |||||||||||| |||||||||||    
T  49138932 gtgcctgcaagcttg-ttctacttgaagataggatttgta 49138894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 555 - 636
Target Start/End: Complemental strand, 52965937 - 52965856
Alignment:
Q  555 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    |||||||||||||||||  |||| || |||||||||||| | |||||| | |||||||| |||||| |||||||| ||||||    
T  52965937 gattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaactcactttta 52965856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 530 - 629
Target Start/End: Complemental strand, 41370118 - 41370021
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    |||||||||||||  ||| | | ||||||||||||||||||||||||| ||  |||| |||||||| ||||||||   || ||| |||||||||||||||    
T  41370118 tagaattgattttaactctagagttgattctacttgaagttaggatttatagttttttattctagacttgatttt--gacgtaaatttatagttcaactc 41370021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 504 - 620
Target Start/End: Original strand, 43868087 - 43868203
Alignment:
Q  504 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 603  Q
    ||||||||||| || ||| | || ||||||||| |||||| ||||| ||||||||||| ||||| ||| |||||||| ||||| | || | |||| ||||    
T  43868087 ttctaacatgtttggttgctttctagtagaattaattttgtctccacaattgattctatttgaaattaagatttgtagcttttaactcaaaagttaattt 43868186  T
Q  604 tcacacataattttata 620  Q
    | ||| |||| ||||||    
T  43868187 ttacatataaatttata 43868203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 535 - 593
Target Start/End: Complemental strand, 11271641 - 11271582
Alignment:
Q  535 ttgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattcta 593  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| ||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagtcta 11271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 528 - 585
Target Start/End: Original strand, 25319022 - 25319080
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttt 585  Q
    |||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||    
T  25319022 agtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 530 - 604
Target Start/End: Original strand, 30889764 - 30889838
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    |||||||||||||| ||| | ||||||||||||||| | ||| ||||||||  |||||||| |||| ||||||||    
T  30889764 tagaattgattttgtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattgatttt 30889838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 528 - 604
Target Start/End: Original strand, 18597014 - 18597091
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    |||| |||||||||| |||||| |||||||||| |||||||| ||  ||||| |||||||||||||| | ||||||||    
T  18597014 agtaaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 528 - 625
Target Start/End: Complemental strand, 20712924 - 20712827
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttca 625  Q
    |||| ||||||||||||||||  ||  |||||||||||||| ||  |||||||  |||| |||  ||| |||||||||||||| |||||| |||||||    
T  20712924 agtaaaattgattttgcctcccgaaacgattctacttgaagctaaaatttgtagttttttattgaagaattgattttcacacacaattttgtagttca 20712827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 33456269 - 33456326
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    |||||||||||||||||||||||| || | ||||||||||| | || |||||||||||    
T  33456269 tatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgatt 33456326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 441 - 502
Target Start/End: Original strand, 33843586 - 33843647
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 502  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||| ||||||| |||||||    
T  33843586 tatgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctga 33843647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 572 - 637
Target Start/End: Original strand, 45011893 - 45011958
Alignment:
Q  572 ggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttttat 637  Q
    ||||||||| |||||||||||||| |||||||||||||| || |||||| ||  |||| |||||||    
T  45011893 ggatttgtagcttttgattctagaattgattttcacacacaaatttataattttactcacttttat 45011958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 551 - 623
Target Start/End: Original strand, 30357510 - 30357582
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagtt 623  Q
    |||||||||||||||||| |  |||||||| ||||||||| || | |||||||| ||||| || |||||||||    
T  30357510 aattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttatagtt 30357582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 536 - 568
Target Start/End: Original strand, 33843661 - 33843693
Alignment:
Q  536 tgattttgcctccaaaattgattctacttgaag 568  Q
    |||||||||||||||||||||||||||||||||    
T  33843661 tgattttgcctccaaaattgattctacttgaag 33843693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 637 - 688
Target Start/End: Original strand, 9134708 - 9134759
Alignment:
Q  637 tccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 688  Q
    |||||||||||||||| ||||| ||||| ||||| || ||||||||||||||    
T  9134708 tccaaacacaattcacttttagccagaaccacttctaaccaaaatcaattct 9134759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 533 - 604
Target Start/End: Original strand, 25927288 - 25927359
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    |||||||| |||||||| ||||||||||| ||| ||||| |||||||| ||| |||||  ||| ||||||||    
T  25927288 aattgattatgcctccataattgattctatttggagttaagatttgtagcttatgatttcagaattgatttt 25927359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 523 - 629
Target Start/End: Complemental strand, 31012854 - 31012747
Alignment:
Q  523 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatag 621  Q
    |||| ||||||| ||||||||  | || |||||||||||||  ||  |||||||||||  |||| ||| |||| |||| ||||||||||||  |||||||    
T  31012854 tgtcgagtagaactgattttgatttcagaattgattctactcaaaactaggatttgtagtttttaattttagaattgatttttcacacatatatttatag 31012755  T
Q  622 ttcaactc 629  Q
    ||||||||    
T  31012754 ttcaactc 31012747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 604
Target Start/End: Complemental strand, 2206451 - 2206377
Alignment:
Q  531 agaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    |||||||||||| |||||||||||||||||| ||||||| ||  | ||| | |||||||||||||  ||||||||    
T  2206451 agaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttt 2206377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 636
Target Start/End: Original strand, 22683838 - 22683947
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 626  Q
    |||| ||||||||||||||||| |||| ||| || ||||||| || ||| |||| ||||||| |||| |  ||||||| |||   || ||||| ||||||    
T  22683838 agtaaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaa 22683937  T
Q  627 ctcgctttta 636  Q
    ||||||||||    
T  22683938 ctcgctttta 22683947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 519 - 636
Target Start/End: Complemental strand, 53713680 - 53713563
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||||| | ||||||| ||||||  || | |||| ||| ||||||||| || |||||||| |||||||||||| | |||| || |||| | |  | ||    
T  53713680 ttgttgtcgaatagaattaattttgtttcaagaattaattttacttgaagctacgatttgtagcttttgattctataattgacttccacataaatatata 53713581  T
Q  619 tagttcaactcgctttta 636  Q
    ||||||||||| ||||||    
T  53713580 tagttcaactcactttta 53713563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 56013954 - 56013913
Alignment:
Q  437 tgtatatgtttggttccacttctagaggaaccaaaattgatt 478  Q
    ||||||||||||||||| |||||||| |||||| ||||||||    
T  56013954 tgtatatgtttggttcctcttctagaagaaccataattgatt 56013913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 78; Significance: 9e-36; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 441 - 608
Target Start/End: Original strand, 31721 - 31881
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 540  Q
    |||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||||||||       ||||| || |||||||| |||| ||||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctga-------catgtttggttgttgtcgagtaaaattgatt 31813  T
Q  541 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 608  Q
     ||||||||||||||||| ||||||||| ||||||||||| ||||||||| | || ||||||||||||    
T  31814 ctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcaca 31881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 9e-33; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 441 - 688
Target Start/End: Original strand, 4910803 - 4911053
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 540  Q
    ||||||||||||||||| |||||  || | |||||||| || | || |||||||||||||||       ||||| || |||| ||| | |||||||||||    
T  4910803 tatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctga-------catgtttggttgtcgtcaattagaattgatt 4910895  T
Q  541 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt------ 634  Q
     |||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||| | || |||||||||| |||| ||||          
T  4910896 ctgcctcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacata 4910995  T
Q  635 ----tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 688  Q
        |||||||||| || |||| |||||||||||| ||||||| ||||||| ||||||    
T  4910996 aatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 453 - 628
Target Start/End: Original strand, 3481946 - 3482121
Alignment:
Q  453 cacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaa 552  Q
    ||||| |||||| | || |||||||| || | || |||||||||||||||||| | |||||| |||||||||||  |||||||||||| || ||  | ||    
T  3481946 cacttttagagggatcataattgattatgtatgtgtagaattgattctgagttatgacatgtttgattgttgtcaggtagaattgattctgtctttagaa 3482045  T
Q  553 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    |||||| |||||||||||| |||||||| | ||||||| |||| |||||||||||||| || ||||||||||||||    
T  3482046 ttgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaact 3482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 435 - 610
Target Start/End: Complemental strand, 5724826 - 5724658
Alignment:
Q  435 tttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaa 534  Q
    ||||| ||||||||||||||||||||||||  |||||||| ||| | || || |||||||||||||||       ||||| ||  || | ||  ||||||    
T  5724826 tttgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctga-------catgtttggatgctttcaggtagaa 5724734  T
Q  535 ttgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| |||||    
T  5724733 ttgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacaca 5724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 528 - 626
Target Start/End: Complemental strand, 6654200 - 6654102
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 626  Q
    ||||||||||||||| ||| || |||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||    
T  6654200 agtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttcaa 6654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 445 - 636
Target Start/End: Complemental strand, 25195550 - 25195368
Alignment:
Q  445 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 544  Q
    |||||||||||||||||||||||||||||||||| |||| || || |||||||||||       |||||| || ||| | || |||| |||||||| |||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctg-------acatgtttggttgctatcgagtataattgattctgc 25195458  T
Q  545 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||||  ||||||||||||||||||   |||||||||  |||| |||||| | |||||||||| ||| || |||| | |||||||| ||||||    
T  25195457 ctccggaattgattctacttgaag--cggatttgtagtttttcattctataattgattttcatacacaaatttacaattcaactcactttta 25195368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 538 - 622
Target Start/End: Complemental strand, 7952809 - 7952725
Alignment:
Q  538 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 622  Q
    ||||||||||||||||| |||||||||||||  |||||||||| |||||||||||||| |||  ||||||||| || ||||||||    
T  7952809 attttgcctccaaaatttattctacttgaagcgaggatttgtagcttttgattctagaattgggtttcacacacaaatttatagt 7952725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 528 - 636
Target Start/End: Original strand, 16540082 - 16540190
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    |||| |||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||| | || |||| ||||||  | |  ||||||||| |||    
T  16540082 agtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcacttacatatttatagttaaac 16540181  T
Q  628 tcgctttta 636  Q
    || ||||||    
T  16540182 tcactttta 16540190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 528 - 636
Target Start/End: Complemental strand, 1485256 - 1485148
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    ||||||||| |||||||||  | |||||||||||||||||  ||| | ||| | |||||||||||||| |||||||| ||||  || ||||| |||||||    
T  1485256 agtagaattaattttgcctttagaattgattctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaac 1485157  T
Q  628 tcgctttta 636  Q
    || ||||||    
T  1485156 tcactttta 1485148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 551 - 610
Target Start/End: Complemental strand, 6896037 - 6895978
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatttattttcgcaca 6895978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 529 - 636
Target Start/End: Original strand, 26280581 - 26280688
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||| |||||||  ||||||||| | | |||||||| ||  | || ||||||||| ||||    
T  26280581 gtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttttacgtacaaatttatagttaaact 26280680  T
Q  629 cgctttta 636  Q
    | ||||||    
T  26280681 cactttta 26280688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 765496 - 765422
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 602  Q
    ||||||| || ||||| ||| | |||||||||||||||||| || |||||||| |||||||||||||| ||||||    
T  765496 agtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 528 - 609
Target Start/End: Original strand, 2234490 - 2234571
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||  |  || | |||||||||||||| |||||||| ||||    
T  2234490 agtagaattgattttgccttcaaaattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattttaacac 2234571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 632 - 686
Target Start/End: Original strand, 4908051 - 4908105
Alignment:
Q  632 ttttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 686  Q
    |||||||||||||||| |||| |||||  ||||||||||||| ||||||||||||    
T  4908051 ttttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 533 - 609
Target Start/End: Original strand, 852512 - 852588
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    |||| |||||||||||| ||||||||| |||||||| ||| | |||||  || |||||||||| |||||||| ||||    
T  852512 aatttattttgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacac 852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 471 - 573
Target Start/End: Complemental strand, 2008498 - 2008403
Alignment:
Q  471 aattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtt 570  Q
    |||||||||||||||| |||||||| ||||||       ||||| |||||||| || ||||||||| |||||| ||||| |||  ||||||||||||| |    
T  2008498 aattgattttggaggtgtagaattgtttctga-------catgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagct 2008406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 604
Target Start/End: Complemental strand, 10400805 - 10400729
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    |||||||||| ||||||| | | |||| |||||| ||||||||||||||| || | |||||||||| | ||||||||    
T  10400805 agtagaattgtttttgccactagaattaattctagttgaagttaggatttctagcctttgattctaaaattgatttt 10400729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 530 - 561
Target Start/End: Original strand, 24974192 - 24974223
Alignment:
Q  530 tagaattgattttgcctccaaaattgattcta 561  Q
    ||||||||||||||||||||||||||||||||    
T  24974192 tagaattgattttgcctccaaaattgattcta 24974223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 636
Target Start/End: Complemental strand, 434345 - 434239
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||||||||| | | || |||||||| || |||||||||  |||  || ||||||||| |||| |||||||| | |||||| |||| | ||||||||    
T  434345 tagaattgatttttctttcataattgattatatttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactc 434246  T
Q  630 gctttta 636  Q
     ||||||    
T  434245 actttta 434239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 551 - 629
Target Start/End: Original strand, 25195848 - 25195926
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||||||| || ||  |||||||| || |||||||||||||| |||| ||  ||||| || |||||||||||||||    
T  25195848 aattgattctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaactc 25195926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 636
Target Start/End: Original strand, 34620863 - 34620969
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||| |||||||||||  |||||||||||| ||||| ||| | |  || ||| |||||||||| |||||||| ||||  || |||||  ||||||||    
T  34620863 tagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactc 34620962  T
Q  630 gctttta 636  Q
     ||||||    
T  34620963 actttta 34620969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 636
Target Start/End: Original strand, 34748300 - 34748406
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||| |||||||||||  |||||||||||| ||||| ||| | |  || ||| |||||||||| |||||||| ||||  || |||||  ||||||||    
T  34748300 tagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactc 34748399  T
Q  630 gctttta 636  Q
     ||||||    
T  34748400 actttta 34748406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 568
Target Start/End: Complemental strand, 35098282 - 35098244
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaag 568  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  35098282 tagaattgattttgcctacaaaattgattctaattgaag 35098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 532 - 588
Target Start/End: Complemental strand, 10565031 - 10564974
Alignment:
Q  532 gaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttga 588  Q
    ||||| |||||||||| ||| | ||||||| ||||||||||||||||||| |||||||    
T  10565031 gaatttattttgcctctaaattcgattctaacttgaagttaggatttgtagcttttga 10564974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 576 - 629
Target Start/End: Original strand, 17225875 - 17225928
Alignment:
Q  576 ttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||| |||||||||||||| |||||||| ||| | || |||||||||||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaactc 17225928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 5e-31; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 522 - 688
Target Start/End: Complemental strand, 33019272 - 33019096
Alignment:
Q  522 ttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatag 621  Q
    ||||| |||| |||||||| |||||| | |||||||| || |||||| ||| ||||||| |||||| || |||| ||||||||||||||||| |||||||    
T  33019272 ttgtcgagtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatag 33019173  T
Q  622 ttcaactcgctttt----------atccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 688  Q
    |||||||| |||||          |||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  33019172 ttcaactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 441 - 611
Target Start/End: Original strand, 30503104 - 30503267
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 540  Q
    |||| ||||||||||||||| |||   |||||||||||||||| || |||||||||||||       |||||||  ||||| | || || |||| |||||    
T  30503104 tatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgattct-------aacatgttcgattgatttcaagaagaaatgatt 30503196  T
Q  541 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 611  Q
    ||||||||||||||||||||||||||||  |||||| ||| |||||||||| ||| |||||||| ||||||    
T  30503197 ttgcctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacat 30503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 528 - 637
Target Start/End: Original strand, 10644578 - 10644687
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||  |||| ||| |||| || | ||||| |||||| |||||||||||||    
T  10644578 agtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtagtttttcattatagaattaactttcatacataaatttatagttcaac 10644677  T
Q  628 tcgcttttat 637  Q
    || |||||||    
T  10644678 tcacttttat 10644687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 506 - 636
Target Start/End: Complemental strand, 11504193 - 11504064
Alignment:
Q  506 ctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttc 605  Q
    ||||||||| |||| |||||  |||| || ||||| | |||||||||||||||||||   |||||||||||||||  |||||||| |||| ||| |||||    
T  11504193 ctaacatgtttgatagttgttgagtataactgattctacctccaaaattgattctaccgaaagttaggatttgtagtttttgattatagaattg-ttttc 11504095  T
Q  606 acacataattttatagttcaactcgctttta 636  Q
    ||||| ||  |||||||||||||| ||||||    
T  11504094 acacacaaagttatagttcaactcactttta 11504064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 441 - 500
Target Start/End: Complemental strand, 33047742 - 33047683
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 500  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattct 33047683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 528 - 610
Target Start/End: Complemental strand, 2002805 - 2002723
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||||||||  |||| |||||| | |||||||| |||||    
T  2002805 agtagaattgattttgcctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgatttttacaca 2002723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 528 - 634
Target Start/End: Original strand, 31453358 - 31453464
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    ||||||||| |||||||||| | |||||||||||||||||| ||  |||||| ||||||||||||  | ||||||||||| || || |||| |||| |||    
T  31453358 agtagaatttattttgcctctataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattttcacgcacaaatttagagtttaac 31453457  T
Q  628 tcgcttt 634  Q
    || ||||    
T  31453458 tcacttt 31453464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 42740968 - 42741033
Alignment:
Q  544 cctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    |||||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||    
T  42740968 cctccataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacac 42741033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 532 - 636
Target Start/End: Original strand, 16518758 - 16518861
Alignment:
Q  532 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgc 631  Q
    |||||| |||||| |||| ||||||||||||| |||| ||||||||||| ||||||||| || || ||| ||| || || || ||||||||||||||| |    
T  16518758 gaattggttttgcttccagaattgattctactagaagataggatttgtagcttttgattata-agatgacttttacgcacaaatttatagttcaactcac 16518856  T
Q  632 tttta 636  Q
    |||||    
T  16518857 tttta 16518861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 22535968 - 22536074
Alignment:
Q  523 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 622  Q
    |||| |||||||||||||||||||  | ||||||||||||||||| |||| ||||| | ||||||||| |||| || |||||  |||| |  ||||||||    
T  22535968 tgtcaagtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttttgcacacatatttatagt 22536067  T
Q  623 tcaactc 629  Q
    | |||||    
T  22536068 taaactc 22536074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 519 - 628
Target Start/End: Original strand, 3352042 - 3352151
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  3352042 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 3352141  T
Q  619 tagttcaact 628  Q
    |  |||||||    
T  3352142 tgtttcaact 3352151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 534 - 636
Target Start/End: Original strand, 42982523 - 42982627
Alignment:
Q  534 attgattttgcctccaaaatt--gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgc 631  Q
    |||||||||||||||| ||||  |||||||||||||| ||| | ||||| |||||||||| ||| |||||||| ||||| || |||||  | |||||| |    
T  42982523 attgattttgcctccagaattttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttattttacaactcac 42982622  T
Q  632 tttta 636  Q
    |||||    
T  42982623 tttta 42982627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 529 - 636
Target Start/End: Original strand, 33502223 - 33502320
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    ||||||||||||||||||||| |||||||||||||          ||||||| |||||||||||| | |||||||| ||||| |  ||||||||||||||    
T  33502223 gtagaattgattttgcctccagaattgattctact----------atttgtaacttttgattctaaaattgatttttacacacatatttatagttcaact 33502312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 504 - 629
Target Start/End: Original strand, 12037012 - 12037137
Alignment:
Q  504 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 603  Q
    ||||||||||| || ||||||||  ||||||||| || ||  || | ||||||||||| |||||  ||  ||||||| |||||||||||| | |||||||    
T  12037012 ttctaacatgtttggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T
Q  604 tcacacataattttatagttcaactc 629  Q
    ||| | | || ||||| |||||||||    
T  12037112 tcataaacaaatttatggttcaactc 12037137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 26032122 - 26032037
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    |||||||| ||||||||||||| ||||||| | |||||||||  | |||| ||  |||||||| |||||| |||||||| ||||||    
T  26032122 aattgattatacttgaagttagaatttgtatcatttgattcttaaattgacttgtacacataaatttatacttcaactcactttta 26032037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 551 - 615
Target Start/End: Original strand, 43501123 - 43501187
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 615  Q
    |||||||||||||||||  ||||||||||| ||||||||| |||| |||||| | ||||| ||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacacaaaatt 43501187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 528 - 563
Target Start/End: Complemental strand, 1976975 - 1976940
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctact 563  Q
    |||||||||||||||| |||||||||||||||||||    
T  1976975 agtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 568
Target Start/End: Complemental strand, 680385 - 680347
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaag 568  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  680385 tagaactgattttgcctccagaattgattctacttgaag 680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 529 - 571
Target Start/End: Original strand, 32777946 - 32777988
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaagtta 571  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32777946 gtagaattgattttgcctccataatttattcaacttgaagtta 32777988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 556 - 629
Target Start/End: Complemental strand, 5533113 - 5533040
Alignment:
Q  556 attctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||||||||| ||  ||||||| |||||||||||  | |||||||  |||||||| |||||| ||||||||    
T  5533113 attctacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataattcaactc 5533040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 7629757 - 7629814
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    ||||||||||||||||| | ||||| |||| ||||||| | ||||| |||||||||||    
T  7629757 tatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgatt 7629814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 527 - 604
Target Start/End: Original strand, 21659693 - 21659770
Alignment:
Q  527 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    ||||| ||||||||||||||||| ||||| ||||||| | || ||  | ||||| ||| |||||||||| ||||||||    
T  21659693 cagtaaaattgattttgcctccataattgtttctactcgtagctaaaaattgtagcttatgattctagaattgatttt 21659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 37561681 - 37561742
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 588  Q
    |||||| ||||||||||||| | |||||||||| |||||||  || ||||||||||||||||    
T  37561681 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 8e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 530 - 688
Target Start/End: Original strand, 42858085 - 42858253
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||||||| | ||||| |||||| | |||||||||||||| || |||||||||||||||    
T  42858085 tagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactc 42858184  T
Q  630 gct----------tttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 688  Q
     ||          ||||| ||||||||  |||| |||||||||||||| ||||| ||||||||||||||    
T  42858185 acttttacatgaatttattcaaacacagatcacttttagtcagaatcatttttaaccaaaatcaattct 42858253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 445 - 610
Target Start/End: Original strand, 11647981 - 11648139
Alignment:
Q  445 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 544  Q
    ||||| |||||||||||||| |||| |||||||||||| ||| || |||||||| |||       ||||| |||||| |||| ||||||||| ||| |||    
T  11647981 tttggctccacttctagagggaccataattgattttggtggtgtataattgattttga-------catgtttgattgctgtcgagtagaatttattatgc 11648073  T
Q  545 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
     |  |||||||||||||||||||| || ||||||||| |||||||| || | ||||||||||||||    
T  11648074 atttaaaattgattctacttgaagctaagatttgtacattttgattataaaattgattttcacaca 11648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 533 - 624
Target Start/End: Original strand, 14299310 - 14299401
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 624  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||  |||| |||||||| ||| ||||||||||||| ||||||||||    
T  14299310 aattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaatttatagttc 14299401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 536 - 637
Target Start/End: Original strand, 9818717 - 9818819
Alignment:
Q  536 tgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactcgcttt 634  Q
    |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| |||| |||| | ||| || ||||||||||||||| ||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttt 9818816  T
Q  635 tat 637  Q
    |||    
T  9818817 tat 9818819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 6951392 - 6951307
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    |||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||| |||||| ||||| || ||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcactttta 6951307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 546 - 635
Target Start/End: Original strand, 38845436 - 38845525
Alignment:
Q  546 tccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttt 635  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||||||| |||||||||||||| || | ||||||| ||||| |||||    
T  38845436 tccaaaattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcactttt 38845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 441 - 686
Target Start/End: Complemental strand, 18851272 - 18851024
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 540  Q
    |||||||| |||| |||||||||| ||||||||||||| ||||| | ||||||||| ||||       || ||| || ||| | || | ||||||||||     
T  18851272 tatgtttgattccgcttctagagggaccaaaattgattatggagttgtagaattgactctg-------acgtgtttggttgctatcaattagaattgatc 18851180  T
Q  541 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctt------- 633  Q
     |  | | | |||||||||||||||||| || |||||||| ||||||||| |||| |||||||||||||| |  ||||||||| ||||| |||           
T  18851179 ctatccctataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacatg 18851080  T
Q  634 ---ttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 686  Q
       ||||||||||||||  ||| |||||||| ||| ||||||| ||||||||||||    
T  18851079 aagttatccaaacacaaaccacatttagtcaaaattacttttaaccaaaatcaatt 18851024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 519 - 637
Target Start/End: Complemental strand, 28110557 - 28110439
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||||||| | ||||||||| ||  |  |||||||||| || || ||||| ||||||||| ||||||||| |||| |||||||||||||| || ||||    
T  28110557 ttgttgtccatttgaattgattctgtatttaaaattgattttattttaagttgggatttgtaacttttgattttagaattgattttcacacacaaattta 28110458  T
Q  619 tagttcaactcgcttttat 637  Q
    ||||| ||||| |||||||    
T  28110457 tagttgaactcacttttat 28110439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 441 - 498
Target Start/End: Complemental strand, 38845701 - 38845644
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 504 - 580
Target Start/End: Complemental strand, 27374425 - 27374349
Alignment:
Q  504 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 580  Q
    |||| |||||| || ||||| || ||||||||| |||||||||  | ||||||||||||||||||||||||||||||    
T  27374425 ttctgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatttgta 27374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 530 - 636
Target Start/End: Complemental strand, 42439726 - 42439619
Alignment:
Q  530 tagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    ||||||||||||| |||||| |||||||||| |||||||| ||| || |||| ||||||| |||| |  ||||||| ||||  |||||||| ||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaact 42439627  T
Q  629 cgctttta 636  Q
    | ||||||    
T  42439626 cactttta 42439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 528 - 610
Target Start/End: Complemental strand, 34250461 - 34250379
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    ||||||||||||| |||||| | |||||||||||||||| | ||| | ||||| |||||||||||| | ||| ||||||||||    
T  34250461 agtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacaca 34250379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 519 - 629
Target Start/End: Original strand, 36290001 - 36290111
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||||| ||||||||| || |||| | || |||||||| |||||||||||| |||||||   ||||||||| | | |||||||||| ||| |  ||||    
T  36290001 ttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattccatatttgattttcagacacatattta 36290100  T
Q  619 tagttcaactc 629  Q
    |||||||||||    
T  36290101 tagttcaactc 36290111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 533 - 629
Target Start/End: Complemental strand, 13171866 - 13171769
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactc 629  Q
    |||||||| |||||||||||||||||||||||||||  | ||||||||  ||||||||||| |  ||| |||||| ||| || ||||||||| |||||    
T  13171866 aattgattctgcctccaaaattgattctacttgaagaaaagatttgtaaattttgattctataaatgatttttcatacaaaaatttatagttaaactc 13171769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 441 - 624
Target Start/End: Complemental strand, 22226426 - 22226250
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 540  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| || ||||||||||||||       |||||| || |||||||| | || ||||||||    
T  22226426 tatgtttgattccacttttagacgaactataattgattttggacgtgtagaattgattctg-------acatgtttggttgttgtcgactaaaattgatt 22226334  T
Q  541 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 624  Q
    |||  |     ||||||||||||||||| ||| ||||||| ||||||||| |||| || | ||| ||||| || |||| |||||    
T  22226333 ttgttttgttgattgattctacttgaagatagtatttgtagcttttgattttagaattaacttttacacacaaatttagagttc 22226250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 528 - 609
Target Start/End: Original strand, 36639912 - 36639993
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    |||||||||||||||||||||||||| |||||||||||||| | | | ||||| ||| | |||||||| ||| |||| ||||    
T  36639912 agtagaattgattttgcctccaaaatagattctacttgaagctggaaattgtagcttctaattctagaattgttttttacac 36639993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 551 - 627
Target Start/End: Original strand, 39097244 - 39097320
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    |||||||||||||||||| ||  ||||||| ||||| ||| || | ||||||||||||||||| |||| ||||||||    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacacataaatttaaagttcaac 39097320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 529 - 581
Target Start/End: Original strand, 43268467 - 43268519
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtac 581  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||    
T  43268467 gtagaattgattttgcctccagaattggttctacttgaagttgagatttgtac 43268519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 533 - 636
Target Start/End: Original strand, 31906239 - 31906342
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 632  Q
    ||||| |||| |||| | |||||||| ||||||||| || |||||||| ||||||||| || | ||||| ||  || |||| ||||||||||||||| ||    
T  31906239 aattgtttttacctctataattgattttacttgaagctatgatttgtaacttttgattatataattgatattttcatataaatttatagttcaactcact 31906338  T
Q  633 ttta 636  Q
    ||||    
T  31906339 ttta 31906342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 509 - 629
Target Start/End: Original strand, 5468729 - 5468850
Alignment:
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta-gagttgattttcac 607  Q
    |||||| ||||||||||| | || |||||||| |||||||| | ||||||||||||||   |||||||| ||  |||| ||| ||  | ||||||||||     
T  5468729 acatgtttgattgttgtcgattataattgattctgcctccatatttgattctacttgagactaggatttataatttttaattttataatttgattttcat 5468828  T
Q  608 acataattttatagttcaactc 629  Q
    ||| || |||||||||||||||    
T  5468829 acacaaatttatagttcaactc 5468850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 551 - 629
Target Start/End: Original strand, 18637282 - 18637358
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||||| |||||||| || |||  ||| |||||||||||||| |||||||| ||||| |  |||||||||||||||    
T  18637282 aattgattccacttgaagctaagataagtagcttttgattctagaattgatttttacacaca--tttatagttcaactc 18637358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 528 - 604
Target Start/End: Original strand, 1105414 - 1105492
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga-ttctagagttgatttt 604  Q
    ||||||||||||||||| | ||||||||||| | ||| ||||||| |||||||| ||||||| ||||| | ||||||||    
T  1105414 agtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttctataattgatttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 441 - 498
Target Start/End: Complemental strand, 3043194 - 3043137
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    ||||| ||||||||||| | |||||| ||||||||||| | ||||| |||||||||||    
T  3043194 tatgtctggttccacttatggaggaatcaaaattgattctagaggtgtagaattgatt 3043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 536 - 565
Target Start/End: Complemental strand, 22572540 - 22572511
Alignment:
Q  536 tgattttgcctccaaaattgattctacttg 565  Q
    ||||||||||||||||||||||||||||||    
T  22572540 tgattttgcctccaaaattgattctacttg 22572511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 509 - 558
Target Start/End: Original strand, 29922582 - 29922631
Alignment:
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgatt 558  Q
    |||||| |||||||| || |||||||||||||||||||| | ||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 593
Target Start/End: Original strand, 32980519 - 32980583
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 593  Q
    ||||||| ||||||||| | || |||||||| |||||||||||| ||||| || ||||||||||||    
T  32980519 agtagaagtgattttgc-tgcagaattgattttacttgaagttaagatttatatcttttgattcta 32980583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 2e-21; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 441 - 636
Target Start/End: Complemental strand, 28084078 - 28083890
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 540  Q
    |||||||| |||||||||||||||| |||||||||| | |||  || |||||||||||||||       ||| | || ||||| || |||||||||||||    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctga-------catatttggttgttttcgagtagaattgatt 28083986  T
Q  541 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||| || |  |||||||||||||||||| ||| ||||||| |||||||||||| | || ||||| ||||| || |||  |||||| ||| ||||||    
T  28083985 ttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcactttta 28083890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 554 - 688
Target Start/End: Original strand, 30557505 - 30557647
Alignment:
Q  554 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt----------tatccaaac 643  Q
    |||||||| |||||| |||||||||||  ||||||||||||| |||||||||||||  || ||||||||||||||| ||||          |||||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacac--aaatttatagttcaactcacttttatatgaatgtatccaaac 30557602  T
Q  644 acaattcacctttagtcagaatcacttttacccaaaatcaattct 688  Q
    |||| |||| | |||||||| ||||||||| ||||||||||||||    
T  30557603 acaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 528 - 636
Target Start/End: Original strand, 6021779 - 6021887
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    |||||||||||||||||||| | ||| |||||||||||||| |||||| |||| |||||||||||| | | |||||| ||||  || ||||| |||||||    
T  6021779 agtagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagatttttacactcaagtttatggttcaac 6021878  T
Q  628 tcgctttta 636  Q
    || ||||||    
T  6021879 tcactttta 6021887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 560 - 636
Target Start/End: Original strand, 7524120 - 7524196
Alignment:
Q  560 tacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || ||||||||||||||| ||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcactttta 7524196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 529 - 636
Target Start/End: Complemental strand, 38797738 - 38797631
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    ||||||||| || |||||||  |||||||| |||||||||||| |||||||| ||| | | || ||| |||||||||||||| || ||||||||||||||    
T  38797738 gtagaattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaact 38797639  T
Q  629 cgctttta 636  Q
    | ||||||    
T  38797638 cactttta 38797631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 530 - 636
Target Start/End: Original strand, 3016140 - 3016245
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 629  Q
    ||||||||||||||| |  | ||||||||||||||||| |||| ||||||| |||||||||||||| ||||| || |||||||| ||||  |||||||||    
T  3016140 tagaattgattttgcttt-ataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactc 3016238  T
Q  630 gctttta 636  Q
     ||||||    
T  3016239 actttta 3016245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 555 - 636
Target Start/End: Original strand, 11049252 - 11049333
Alignment:
Q  555 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    |||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||| || |||||||||||| || ||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcactttta 11049333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 527 - 629
Target Start/End: Original strand, 1514317 - 1514419
Alignment:
Q  527 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 626  Q
    ||||| || ||||| || |||||||||| ||||||||||||| ||||||||||| ||||| ||| || | |||||||| ||||| || ||||| ||||||    
T  1514317 cagtaaaactgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaa 1514416  T
Q  627 ctc 629  Q
    |||    
T  1514417 ctc 1514419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 529 - 604
Target Start/End: Complemental strand, 31362310 - 31362239
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    ||||||||||||||||||||| ||||||||||    |||||||| ||||||| |||||||||||||| ||||||||    
T  31362310 gtagaattgattttgcctccataattgattct----gaagttagaatttgtagcttttgattctagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 442 - 690
Target Start/End: Complemental strand, 2099873 - 2099625
Alignment:
Q  442 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattt 541  Q
    ||||||||||||  ||||||||||   | |||||||| ||||||| ||||||||||| ||| ||       || |||||| |||| |||||||||||||     
T  2099873 atgtttggttcc--ttctagaggagttagaattgattctggaggtgtagaattgattatgactt-------gtttgattgatgtcgagtagaattgattg 2099783  T
Q  542 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt------- 634  Q
    |  ||||| |||||||| || |||||| |  ||||||||  ||||| || |||| ||||||||||||||||| ||||||| |||||||  |||           
T  2099782 t--ctccagaattgattgtaattgaagctgagatttgtagattttggttatagaattgattttcacacataaatttatagctcaactcattttttatatg 2099685  T
Q  635 ----tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctcc 690  Q
        ||||||||||||| |||| |||| ||| ||| ||||||| ||||||||||||||||    
T  2099684 aatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattctcc 2099625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 7790729 - 7790644
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||||||||||||||||||||| ||||||||  ||| ||||||| | |||||||| ||||| || ||||| ||||||||| ||||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 437 - 615
Target Start/End: Complemental strand, 36780311 - 36780139
Alignment:
Q  437 tgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaatt 536  Q
    |||||||||||| ||  |||| |||||| |||| |||||||| ||||||| ||||||||||| |||        |||| || |||||||| ||| | |||    
T  36780311 tgtatatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgattttgat-------atgtttggttgttgtcgagttgtatt 36780219  T
Q  537 gattttgcctccaaaattgattctacttgaagttagga-tttgtaccttttgattctagagttgattttcacacataatt 615  Q
     |||||  || ||||||  ||||||||||||||||||| |||||| ||||||||| |||| ||||||||| ||| |||||    
T  36780218 aattttatcttcaaaatgaattctacttgaagttaggattttgtagcttttgattatagaattgattttcgcacgtaatt 36780139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 519 - 636
Target Start/End: Complemental strand, 47322025 - 47321909
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||||| ||||||||||||| ||| || | |||||||| ||||||||| ||| ||||| |  |||| |||||||| |||||||||| ||| || ||||    
T  47322025 ttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgca-gttttaattctagaattgattttcatacacaaattta 47321927  T
Q  619 tagttcaactcgctttta 636  Q
    |||||||| || ||||||    
T  47321926 tagttcaattcactttta 47321909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 540 - 604
Target Start/End: Complemental strand, 48549110 - 48549046
Alignment:
Q  540 tttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    ||||||||||||||||||||||||||||| ||| | ||||| ||| |||||||||| ||||||||    
T  48549110 tttgcctccaaaattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 511 - 629
Target Start/End: Original strand, 3416038 - 3416156
Alignment:
Q  511 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    |||| ||||||| ||  |||||||||||||  || || |||||||||| ||||| |||||| ||||||||  |||| ||| |||| |||||||| |||||    
T  3416038 atgtttgattgtcgttgagtagaattgattacgcatctaaaattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacaca 3416137  T
Q  611 taattttatagttcaactc 629  Q
     || ||||||||| |||||    
T  3416138 caaatttatagtttaactc 3416156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 519 - 621
Target Start/End: Complemental strand, 34387812 - 34387710
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 618  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  34387812 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 34387713  T
Q  619 tag 621  Q
    |||    
T  34387712 tag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 533 - 647
Target Start/End: Original strand, 50571264 - 50571377
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 632  Q
    ||||||||||  || || ||||||||||||||||||||||||||||||  |||| ||||||||  |||| |||| ||| ||  ||||||||||| ||  |    
T  50571264 aattgattttatcttcagaattgattctacttgaagttaggatttgtagttttttattctagaactgatgttcagacacaaagttatagttcaattc-at 50571362  T
Q  633 tttatccaaacacaa 647  Q
    | |||||||||||||    
T  50571363 tatatccaaacacaa 50571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 509 - 624
Target Start/End: Complemental strand, 34721966 - 34721854
Alignment:
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 608  Q
    |||||| ||||||||||  | || ||||||||||||||  | ||||||||||   ||||||||||||||||   |||| |||||| | ||||||||||||    
T  34721966 acatgtttgattgttgttaaatataattgattttgcctttagaattgattct---tgaagttaggatttgttgttttttattctataattgattttcaca 34721870  T
Q  609 cataattttatagttc 624  Q
    || || ||||||||||    
T  34721869 cacaaatttatagttc 34721854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 554 - 636
Target Start/End: Complemental strand, 30850483 - 30850401
Alignment:
Q  554 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||||||||||||||  |||||||||||  |||| ||| |||| |||||||| ||| | || ||||||||||||||| ||||||    
T  30850483 tgattctacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaactcactttta 30850401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 528 - 626
Target Start/End: Complemental strand, 50569753 - 50569655
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 626  Q
    ||||||||||||||| |||| |||||| || || ||||||  |||||| |||| ||||||| |||| | |||| ||||||| | || ||||||||||||    
T  50569753 agtagaattgattttacctcaaaaattaatgctgcttgaaactaggatctgtaacttttgaatctataattgaatttcacaaacaaatttatagttcaa 50569655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 528 - 610
Target Start/End: Complemental strand, 51500939 - 51500862
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    ||||||||||||||| |||||||      |||||||||||  ||||||||||| |||||||||||||| |||||||| |||||    
T  51500939 agtagaattgattttacctccaag-----ttctacttgaacctaggatttgtagcttttgattctagaattgatttttacaca 51500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 566 - 687
Target Start/End: Original strand, 4887718 - 4887837
Alignment:
Q  566 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaat 665  Q
    |||||| |||||||| |  |||||| |||| |||||||||||||| || ||||||||| ||||  |||| || ||||||||| |||| ||| |||| |||    
T  4887718 aagttaagatttgtaaccattgatt-tagaattgattttcacacacaaatttatagttaaacttacttt-attcaaacacaaatcacttttggtcaaaat 4887815  T
Q  666 cacttttacccaaaatcaattc 687  Q
     | ||||| |||||||||||||    
T  4887816 tatttttagccaaaatcaattc 4887837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 551 - 628
Target Start/End: Complemental strand, 28287423 - 28287346
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    ||||| ||||||||||||  |||||||||| ||||||||| |||| |||||||| ||||  || ||||| ||||||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaact 28287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 533 - 609
Target Start/End: Complemental strand, 10325043 - 10324967
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    |||| |||||||||| | |||||| ||||||||||| ||| | ||||| |||||||||||| | |||||||| ||||    
T  10325043 aattaattttgcctctagaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacac 10324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 519 - 610
Target Start/End: Original strand, 3909827 - 3909918
Alignment:
Q  519 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    |||||||| |||| || | ||||||| | |||||| |||||  |||||||||||||| ||||  |||| ||| |||| ||||||||||||||    
T  3909827 ttgttgtcaagtataactcattttgctttcaaaatcgattcagcttgaagttaggatatgtagattttcattatagaattgattttcacaca 3909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 436 - 498
Target Start/End: Complemental strand, 15478196 - 15478134
Alignment:
Q  436 ttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    |||| ||||||||||||||||| | ||||| ||||| |||||||| | ||| |||||||||||    
T  15478196 ttgtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgatt 15478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 538 - 620
Target Start/End: Original strand, 33733954 - 33734036
Alignment:
Q  538 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 620  Q
    |||||| || ||||||||||| || || ||||||| |||| || |||||||||| ||  |||||||| |||||||| ||||||    
T  33733954 attttgtcttcaaaattgattgtatttaaagttagaatttttaacttttgattcgagcattgatttttacacataaatttata 33734036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 529 - 581
Target Start/End: Original strand, 5268194 - 5268247
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtac 581  Q
    |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  5268194 gtagaattaattttgcctccaaaattgattctaactcgaagctagaatttgtac 5268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 8130853 - 8130910
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    ||||||||||||||||||| ||||| |||||||||||| |  | || |||||||||||    
T  8130853 tatgtttggttccacttctggaggagccaaaattgattctaaaagtgtagaattgatt 8130910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 533 - 622
Target Start/End: Complemental strand, 15986326 - 15986237
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 622  Q
    |||| |||||||||||| |||||||| || |||||  ||||||||  |  |||| |||||||| ||||| |||||||| || ||||||||    
T  15986326 aattaattttgcctccagaattgattatagttgaaactaggatttcaagttttttattctagaattgatattcacacacaaatttatagt 15986237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 575 - 636
Target Start/End: Original strand, 34915088 - 34915149
Alignment:
Q  575 tttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    |||||| |||||||||||||| |||||| | |||||  |||||||| |||||||| ||||||    
T  34915088 tttgtagcttttgattctagaattgattctaacacaccattttataattcaactcactttta 34915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 45660938 - 45660878
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 502  Q
    ||||||| ||||||||||| ||||  |||||||||| |||||||||  ||||||||||||||    
T  45660938 tatgtttcgttccacttctggaggggccaaaattga-tttggaggtgaagaattgattctga 45660878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 504 - 635
Target Start/End: Complemental strand, 41386949 - 41386818
Alignment:
Q  504 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 603  Q
    |||| |||||| |||||| | || |||| |||||||||  ||| || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |    
T  41386949 ttctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaattgatat 41386850  T
Q  604 tcacacataattttatagttcaactcgctttt 635  Q
    | ||||| || |||||| |||||||| |||||    
T  41386849 ttacacacaaatttataattcaactcactttt 41386818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 533 - 636
Target Start/End: Original strand, 40491558 - 40491661
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 632  Q
    |||||||||||||| || |||||| |||||||||||||| | |||||| |||||||||||||| |||| ||| ||||| || |||| |||| ||||| ||    
T  40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcact 40491657  T
Q  633 ttta 636  Q
    ||||    
T  40491658 ttta 40491661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 533 - 610
Target Start/End: Complemental strand, 15903635 - 15903558
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||  ||  | ||||||||||||||    
T  15903635 aattgattttgcctccaaaattgattatacttgaagttgggatttgtagcttttgaagcttcaattgattttcacaca 15903558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 509 - 609
Target Start/End: Original strand, 27571818 - 27571918
Alignment:
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 608  Q
    |||||| |||||| | || |||| |||||||||| |||| | |||||||||||||||||||||| | ||| | |||||||||||||| |||||||| |||    
T  27571818 acatgtttgattgctctcgagtataattgattttacctcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaaca 27571917  T
Q  609 c 609  Q
    |    
T  27571918 c 27571918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 509 - 608
Target Start/End: Original strand, 22195820 - 22195919
Alignment:
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 608  Q
    |||||| ||||| ||||| ||||||||||||| || |  ||||||||||| ||||| ||| || |||||||| |||||||||||| | ||||||||||||    
T  22195820 acatgtttgattattgtcgagtagaattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcaca 22195919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 516 - 626
Target Start/End: Original strand, 35772221 - 35772331
Alignment:
Q  516 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 615  Q
    ||||||||||  | |||||||| || || |||||||||| ||||||||| || ||| ||||||||  |||||||| |||| |||||||||||| |||| |    
T  35772221 tgattgttgtagaatagaattggttctgtctccaaaatttattctacttaaaattaagatttgtagtttttgattttagaattgattttcacaaataaat 35772320  T
Q  616 ttatagttcaa 626  Q
    ||||| |||||    
T  35772321 ttataattcaa 35772331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 530 - 609
Target Start/End: Complemental strand, 28725160 - 28725081
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    |||||||||||  |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||| | |||||| ||||||    
T  28725160 tagaattgattcagcctccaatattgattatacttgaagctagaatttgtagcttttgattctataattgattctcacac 28725081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 528 - 609
Target Start/End: Complemental strand, 5489956 - 5489875
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||| | ||| | ||||||||| || | |||||||| ||||    
T  5489956 agtagaattaattttgcctccaaaattgattctacttgatgctagaaattggagcttttgattatataattgattttaacac 5489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 528 - 585
Target Start/End: Original strand, 36270955 - 36271012
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttt 585  Q
    |||||||||||||||||||| | |||| ||||||||||||||| ||||||||| ||||    
T  36270955 agtagaattgattttgcctctagaatttattctacttgaagttgggatttgtagcttt 36271012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 528 - 588
Target Start/End: Original strand, 40422767 - 40422828
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 588  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||  |||||||    
T  40422767 agtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 528 - 604
Target Start/End: Complemental strand, 44856917 - 44856843
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 604  Q
    ||||||||||||||| |||||||||||||| |||||||||  || ||||| || | |||||||||||| ||||||||    
T  44856917 agtagaattgattttccctccaaaattgatactacttgaa--tatgatttataacatttgattctagaattgatttt 44856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 529 - 609
Target Start/End: Complemental strand, 30182404 - 30182325
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    |||||||||||||  ||||||||||||||||||||||||| ||  | ||||| |||||||||||||| || ||||| ||||    
T  30182404 gtagaattgatttc-cctccaaaattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacac 30182325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 46325570 - 46325627
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    ||||||||||| ||||||||||| ||||||| || |||||||| || |||||||||||    
T  46325570 tatgtttggtttcacttctagagaaaccaaatttaattttggatgtgtagaattgatt 46325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 533 - 637
Target Start/End: Original strand, 25156176 - 25156284
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtac----cttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    |||||||||| |||| |||||||||||  ||| ||||||| ||||||||     |||| |||||||| |||||||| |||||||| || |||  ||||||    
T  25156176 aattgatttttcctctaaaattgattcatcttaaagttagaatttgtacgtagttttttattctagaattgatttttacacataaattaataaatcaact 25156275  T
Q  629 cgcttttat 637  Q
    | |||||||    
T  25156276 cacttttat 25156284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 530 - 568
Target Start/End: Original strand, 45004997 - 45005035
Alignment:
Q  530 tagaattgattttgcctccaaaattgattctacttgaag 568  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  45004997 tagaattgattttgccttcagaattgattctacttgaag 45005035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 551 - 592
Target Start/End: Original strand, 17111855 - 17111896
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattct 592  Q
    |||||||||||||||||| || |||||||| |||||||||||    
T  17111855 aattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 551 - 636
Target Start/End: Complemental strand, 38123753 - 38123668
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    |||||||||||||||||| ||| | ||||| ||| | |||||||| |||||||| ||||  || ||||| | ||||||| ||||||    
T  38123753 aattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcactttta 38123668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 7e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 441 - 610
Target Start/End: Complemental strand, 25359763 - 25359602
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 540  Q
    ||||||||||||||||| |||||   ||| |||||||| ||||||| |||||||| ||||       | ||||| || ||| |||| | || ||||||||    
T  25359763 tatgtttggttccacttttagagtggccagaattgattatggaggtatagaattgcttct-------accatgtttggttgctgtcaaata-aattgatt 25359672  T
Q  541 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 610  Q
     |||||||| |||||||||||||||||||||| |||||||  |||| |||||| | ||||||||||||||    
T  25359671 ctgcctccagaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacaca 25359602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 516 - 626
Target Start/End: Complemental strand, 40736659 - 40736550
Alignment:
Q  516 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 615  Q
    ||||||||||| |||| |||||||||||| ||| ||||||||||||||||||  ||  ||||||  |||||||||||||| || ||||||||||| || |    
T  40736659 tgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttgtcgcttttgattctaga-ttaattttcacacacaaat 40736561  T
Q  616 ttatagttcaa 626  Q
    ||||| |||||    
T  40736560 ttataattcaa 40736550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 509 - 607
Target Start/End: Original strand, 54596774 - 54596872
Alignment:
Q  509 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcac 607  Q
    |||||| || ||||| || ||||||||||||| ||||||||||| ||||| || |||||||||| ||||||| ||||| ||| |||| |||||||||||    
T  54596774 acatgtttggttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattttagaattgattttcac 54596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 439 - 502
Target Start/End: Complemental strand, 52141437 - 52141374
Alignment:
Q  439 tatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 502  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| ||||||||    
T  52141437 tatatgtttggttccacttctagagggaccataattgatttttgaggtgtagaatagattctga 52141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 528 - 629
Target Start/End: Complemental strand, 32523451 - 32523349
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttg-aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 626  Q
    |||| ||| ||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||| | |||||||| ||||| || |||| |||| ||    
T  32523451 agtaaaatagattttgcctccataattatttctacttggaagttaggatttgtagcttttgattctaaaattgatttttacacacaaatttagagtttaa 32523352  T
Q  627 ctc 629  Q
    |||    
T  32523351 ctc 32523349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 1290676 - 1290733
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||    
T  1290676 tatgtttggttccacttctagaggaactaaaattgattctagaggtgtagaattgatt 1290733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 551 - 636
Target Start/End: Original strand, 52364049 - 52364134
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||||| |||||||||||| || ||||| || |||||||||||| | |||||||||| |||||| |||| |||||||||| ||||||    
T  52364049 aattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcactttta 52364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 528 - 592
Target Start/End: Complemental strand, 7717431 - 7717367
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 592  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| | ||||| ||| |||||||    
T  7717431 agtagaattgattttgcctccagaattgattctacttgaagctagaaattgtagcttctgattct 7717367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 528 - 637
Target Start/End: Original strand, 35058336 - 35058446
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac-ataattttatagttcaa 626  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| | ||  | |||||||||||||| |||||||| ||||   ||| |||| ||||||    
T  35058336 agtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgattttaacactcaaatattattgttcaa 35058435  T
Q  627 ctcgcttttat 637  Q
    ||| |||||||    
T  35058436 ctcacttttat 35058446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 533 - 609
Target Start/End: Complemental strand, 37335139 - 37335063
Alignment:
Q  533 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    ||||||||||||||| | |||||||| |||| |||||||| | | ||| |||||||||||||| |||||||| ||||    
T  37335139 aattgattttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgatttttacac 37335063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 529 - 629
Target Start/End: Original strand, 44771670 - 44771770
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 628  Q
    ||||||||| ||||||||||  |||||||||||| | ||  ||| ||||||| |||||||||||| | |||||||| |||||| | |||  |||||||||    
T  44771670 gtagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttttacacattaatttgaagttcaact 44771769  T
Q  629 c 629  Q
    |    
T  44771770 c 44771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 528 - 595
Target Start/End: Complemental strand, 1441491 - 1441424
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 595  Q
    |||||||||||||||| ||| | ||| || ||||||||||  ||||||||||| ||||||||||||||    
T  1441491 agtagaattgattttgtctctataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 531 - 626
Target Start/End: Complemental strand, 35264518 - 35264423
Alignment:
Q  531 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 626  Q
    |||||||||| ||||||||||  ||||||||||||||  ||| | ||  | |||||||||||||| |||||||| |||| ||| ||||| ||||||    
T  35264518 agaattgattctgcctccaaatatgattctacttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttattgttcaa 35264423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 441 - 498
Target Start/End: Complemental strand, 3845302 - 3845245
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    ||||||||||||||||| | ||| |||||||||||||| | ||||| |||||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgatt 3845245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 52363960 - 52364017
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    ||||||||||||||||| |||||| ||||||||||||| | ||||| || ||||||||    
T  52363960 tatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatt 52364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 528 - 636
Target Start/End: Original strand, 36302158 - 36302266
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 627  Q
    ||||||||||||||||||| || | ||||||||| |||||| |||   ||| |  |||||||| |||| ||||||||  ||| ||| ||||| |||||||    
T  36302158 agtagaattgattttgccttcagagttgattctatttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaac 36302257  T
Q  628 tcgctttta 636  Q
    || ||||||    
T  36302258 tcactttta 36302266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 48410939 - 48410891
Alignment:
Q  511 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattc 559  Q
    |||| |||||| | || ||||||||||||||||||||||||||||||||    
T  48410939 atgtttgattgctttcgagtagaattgattttgcctccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 529 - 568
Target Start/End: Complemental strand, 30301108 - 30301069
Alignment:
Q  529 gtagaattgattttgcctccaaaattgattctacttgaag 568  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  30301108 gtagaattgattttgcctccaaaattgactctatttgaag 30301069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 551 - 606
Target Start/End: Original strand, 35058065 - 35058120
Alignment:
Q  551 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttca 606  Q
    |||||||||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||    
T  35058065 aattgattctacatgaagctaggatttgtagcttttaattatagaattgattttca 35058120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 528 - 587
Target Start/End: Complemental strand, 41115472 - 41115413
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttg 587  Q
    ||||||||||||||||| |  | |||||||||||||||||| ||| ||||||| ||||||    
T  41115472 agtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttg 41115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 574 - 636
Target Start/End: Complemental strand, 31708303 - 31708241
Alignment:
Q  574 atttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    ||||||| |||||||||||||| |||||| | ||||| || |||||| |||||||| ||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcactttta 31708241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 538 - 636
Target Start/End: Complemental strand, 40147950 - 40147852
Alignment:
Q  538 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 636  Q
    |||||| || || |||||||||||||| ||| ||| ||||| | |||||||||||||| |||||||  |||| | | |||||  |||||||| ||||||    
T  40147950 attttgtcttcagaattgattctacttcaagctagaatttggagcttttgattctagaattgatttcaacacttgaatttatcattcaactcactttta 40147852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 528 - 626
Target Start/End: Complemental strand, 47356355 - 47356257
Alignment:
Q  528 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 626  Q
    |||| ||||||||||| ||  | ||| ||||| ||||||||||| ||||| ||   ||||||| |||| |||||||| |||||||| |||| |||||||    
T  47356355 agtataattgattttgtctttagaatcgattccacttgaagttaagatttatagtctttgattatagaattgatttttacacataaatttaaagttcaa 47356257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 528 - 568
Target Start/End: Original strand, 38022410 - 38022451
Alignment:
Q  528 agtagaattgatttt-gcctccaaaattgattctacttgaag 568  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  38022410 agtagaattgatttttgcctccaaaattgattctacctgaag 38022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 532 - 609
Target Start/End: Complemental strand, 44958712 - 44958635
Alignment:
Q  532 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 609  Q
    |||||||||||||||||| | ||||||||||| || | ||| | ||| | ||||||||||||||  ||||||| ||||    
T  44958712 gaattgattttgcctccagagttgattctactcgatgctagaaattggagcttttgattctagaaatgattttaacac 44958635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 442 - 498
Target Start/End: Original strand, 17322 - 17378
Alignment:
Q  442 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 498  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgatt 17378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 441 - 502
Target Start/End: Complemental strand, 31605 - 31544
Alignment:
Q  441 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 502  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||  | || ||||||||||||    
T  31605 tatgtttagttccacttctagagggaccaaaattgattttagacctgtaaaattgattctga 31544  T

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