View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_low_10 (Length: 584)
Name: NF8961_low_10
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_10 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 247 - 584
Target Start/End: Complemental strand, 14104115 - 14103778
Alignment:
| Q |
247 |
tgatgttattcttgagctgactttgcaagaagaaataaagaggaaaaaagaatgcataagtcacgtgagttggtattagccacattgaaatcactccagc |
346 |
Q |
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| T |
14104115 |
tgatgttattcttgagctgactttgcaagaagaaataaagaggaaaaaagaatgcataagtcacgtgagttggtattagccacattgaaatcactccagc |
14104016 |
T |
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| Q |
347 |
tagctcagatatctcttgtggttgtccaaaaaagtttaagattggtgttgcaaagatgaaaagaggtaaaaggagaattcctgtgatgaaaagaacgatc |
446 |
Q |
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| T |
14104015 |
tagctcagatatctcttgtggttgtccaaaaaagtttaagattggtgttgcaaagatgaaaagaggtaaaaggagaattcctgtgatgaaaagaacgatc |
14103916 |
T |
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| Q |
447 |
catgaacgttgcatgtaaattcctaacatgttgaattgtttggctccaaatgcttgtccacatagagtttccaaagcgcttgacatacccaactgatgca |
546 |
Q |
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| T |
14103915 |
catgaacgttgcatgtaaattcctaacatgttgaattgtttggctccaaatgcttgtccacatagagtttccaaagcgcttgacatacccaactgatgca |
14103816 |
T |
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| Q |
547 |
aaaacagaatgttatttacttgtttagcaccaactacc |
584 |
Q |
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| T |
14103815 |
aaaacagaatgttatttacttgtttagtaccaactacc |
14103778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 14104344 - 14104178
Alignment:
| Q |
18 |
gcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacccaaaacagcatacccnnnnnnnc |
117 |
Q |
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| T |
14104344 |
gcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacacaaaacagcatacccaaaaaaac |
14104245 |
T |
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| Q |
118 |
caaacaccaaaacaatccaagccacattcccagaagcaacaagagcaataacaccaagcttaaactt |
184 |
Q |
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| T |
14104244 |
caaacaccaaaacaatccaagccacattcccagaagcaacaagagcaataacaccaagcttaaactt |
14104178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 444 - 542
Target Start/End: Complemental strand, 14092257 - 14092159
Alignment:
| Q |
444 |
atccatgaacgttgcatgtaaattcctaacatgttgaattgtttggctccaaatgcttgtccacatagagtttccaaagcgcttgacatacccaactga |
542 |
Q |
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| T |
14092257 |
atccatgatcgttgcatgtatactcctaacatgtaatattgttttgctccatatgcttgtccacataaagtttctaatgcacttgccattcctaactga |
14092159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 14092683 - 14092607
Alignment:
| Q |
18 |
gcagagagtttagcaaactcccaaagatcaaagaaagcctccatagaaaaaccagtccaagttaagggacaaccacc |
94 |
Q |
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| T |
14092683 |
gcagaaagtttaacaaattcccaaagcccagaaaaagcctccatagaaaacccattccaagtcaaaggacaaccacc |
14092607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 540
Target Start/End: Complemental strand, 33993274 - 33993215
Alignment:
| Q |
481 |
attgtttggctccaaatgcttgtccacatagagtttccaaagcgcttgacatacccaact |
540 |
Q |
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| T |
33993274 |
attgttttgctccatatgcttgtccacatagtgtttctaatgcacttgccatacccaact |
33993215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 535
Target Start/End: Complemental strand, 33983601 - 33983547
Alignment:
| Q |
481 |
attgtttggctccaaatgcttgtccacatagagtttccaaagcgcttgacatacc |
535 |
Q |
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| T |
33983601 |
attgttttgctccatatgcttgtccacatagtgtttccaatgcacttgccatacc |
33983547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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