View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8961_low_17 (Length: 547)
Name: NF8961_low_17
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 533
Target Start/End: Complemental strand, 34946471 - 34945947
Alignment:
| Q |
9 |
gacatcaagtcataagaaaggttttggtttgtgtttcacttgannnnnnnnnactagagtgtatcatttgaaattgaaacatatactgatttgtttcgct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34946471 |
gacatcaagtcataagaaaggttttggtttgtgtttcacttgatttttttttactagagtgtatcatttgaaattgaaacatatactgatttgtttcgct |
34946372 |
T |
|
| Q |
109 |
gatgattatatttggcggtaatattgtatatactcatcatagggattttgctgaccatgatctttcctttttggatttacacgtcgtcgatcggaagacg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34946371 |
gatgattatatttggcggtaatattgtatatactcatcataggaattttgctgaccataatctttcctttttggatttacacgtcgttgatcggaagacg |
34946272 |
T |
|
| Q |
209 |
gcgtagcttgaacggtgatttagtgtgtgtttgaactaacatattttaaggcagtgttatgttttttagcttcccaagagagccattgcaaacaaaattt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34946271 |
gcgtagcttgaacggtgatttagtgtgtgtttgaactaacatattttaaggcagtgttatgttttttagcttcccaagagagccattgcaaacaaaatta |
34946172 |
T |
|
| Q |
309 |
tcttccaaattaagctaaaaacatggttttacagacagtagaatgtgtgccagactccaatcgtccttacttgaatctatttacttattcaaattatttg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34946171 |
tcttccaaattaagctaaaaacatggttttacagacagtagaatttgtgccagactccaatcgtccttacttgaatctatttacttattcaaattatttg |
34946072 |
T |
|
| Q |
409 |
aacgatctgaaaacagtattctgctacttatcagttgtcactttcaaattcatcaaagcaactatatagtcaatcctgttgctgatttcacactacagat |
508 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34946071 |
aacaatctgaaaacagtattctgctacttatcagttgtcactttcaaattcatcaaagcaactatatagtcaatcctgttgctgatttcacactacagat |
34945972 |
T |
|
| Q |
509 |
acatatcatgtgttgtgggatgtcc |
533 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
34945971 |
acatatcatgtgttgtgggatgtcc |
34945947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University