View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_low_18 (Length: 528)
Name: NF8961_low_18
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_18 |
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| [»] scaffold0517 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 45082497 - 45082256
Alignment:
| Q |
13 |
gattattctaaggtgacagaaaactaaagaaaaaagagataggtatttgcttctttttg-gttcatgttatttttgaagttgtaattgcgatatttcatg |
111 |
Q |
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| T |
45082497 |
gattattctaaggtgacaaaaaactaaagaaaaaagagataggtatttgcttctttttttgttcatgttatttttgaagttgtaattgcgatatttcatg |
45082398 |
T |
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| Q |
112 |
tcagtcgctagaaatctaatctaattaaatcatcaaccctttaatgtctctctctttatttgtacttccatcaaaatgtaaaatagggggaataacatac |
211 |
Q |
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| T |
45082397 |
tctgtcgctagaaatctaatctaattaaatcatcaaccctttaatgtct--ctctttatttgtacttccatcaaaatgtaaaatagggggaataaaattc |
45082300 |
T |
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| Q |
212 |
tattacatttggttatttcagttacttggttgaaaacacccttt |
255 |
Q |
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| T |
45082299 |
tattatatttggttatttcggttacgtggttgaaaacacccttt |
45082256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 288 - 509
Target Start/End: Original strand, 22721957 - 22722180
Alignment:
| Q |
288 |
aatgatgagaataaattgtagccattagattaaaagacaagggctgggattaaaacaacttaaagtgagttgctaatcatgtgattattctctcacttc- |
386 |
Q |
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| T |
22721957 |
aatgatgagaataaattgtagccattagattaaaagataggggctgggattaaaacaacttaat-tgagttgtcaattatgtgattattctctcacttcg |
22722055 |
T |
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| Q |
387 |
---catcattcacgttcaacgattcaaggtctgtgccttaacccttcttcttctttcaaaagtttgcgtgtcttcttcctctcccgattaacaaactttt |
483 |
Q |
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| T |
22722056 |
atacatcattcacattcaacggttcaag-tatgtgccttaacccttctttttcattcaaaagtttgtgtgtcttcttcccctcccgattaacaatcattt |
22722154 |
T |
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| Q |
484 |
ccggcgaccctgactccggcgaccac |
509 |
Q |
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| T |
22722155 |
ccggtaaccctgactccagcgaccac |
22722180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 4754 - 4699
Alignment:
| Q |
288 |
aatgatgagaataaattgtagccattagattaaaagacaagggctgggattaaaaca |
344 |
Q |
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| T |
4754 |
aatggtgagaatgaattgtagccattagattaaaag-caagggataagattaaaaca |
4699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 37403322 - 37403377
Alignment:
| Q |
288 |
aatgatgagaataaattgtagccattagattaaaagacaagggctgggattaaaaca |
344 |
Q |
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| T |
37403322 |
aatggtgagaatgaattgtagccattagattaaaag-caagggataagattaaaaca |
37403377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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