View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_low_26 (Length: 421)
Name: NF8961_low_26
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 407
Target Start/End: Original strand, 672695 - 673091
Alignment:
| Q |
11 |
cacagaaagcaatagtaacaaggtaattgttcacaacttgctccctcatttggttgtctataatgatggcaccatagatcgtccaagaaactttccaatt |
110 |
Q |
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| T |
672695 |
cacagaaagcaatagtaacaaggtaattgttcacaacttgctccctcatttggttgtctataatgatggcaccatagatcgtctaagaaactttccaatt |
672794 |
T |
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| Q |
111 |
gttcctccacaacaagaggaccctaaaactggtgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaac |
210 |
Q |
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| T |
672795 |
gttcctccacaacaagaggaccctaaaactggtgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaac |
672894 |
T |
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| Q |
211 |
taacacaaaccaatgatcaaaaccaaaaactctccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatccatccaccatac |
310 |
Q |
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| T |
672895 |
taacacaaaccaatgatcaaaaccaaaaactctccatcttggtttatttttatggtggtgcattcagctttgaatcagcatattcatccatccaccatgc |
672994 |
T |
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| Q |
311 |
atattgtaacctcttagcttctcaagcaaatattttgattgcttccatagaacatagaaatgctccagagcattatcttcctgcaggttataatgat |
407 |
Q |
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| T |
672995 |
atattgtaacctcttagcttctcaagcaaatattttgattgcttccatagaacatagaaatgctccagagcattatcttcctgcaggttataatgat |
673091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 663056 - 663127
Alignment:
| Q |
143 |
tgtctcatccaaagacattgtcttttccaatgacccttacctcactgctagactttaccttccaaaactaac |
214 |
Q |
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| T |
663056 |
tgtctcatcaaaagacattctcttttccaatgaaccttcactctttgctagactttacctaccaaaactaac |
663127 |
T |
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