View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_low_27 (Length: 417)

Name: NF8961_low_27
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_low_27
NF8961_low_27
[»] chr1 (3 HSPs)
chr1 (88-217)||(25524089-25524216)
chr1 (282-343)||(25523900-25523963)
chr1 (368-401)||(25523842-25523875)
[»] chr3 (1 HSPs)
chr3 (113-167)||(19657176-19657230)
[»] chr6 (2 HSPs)
chr6 (110-167)||(9485500-9485557)
chr6 (109-165)||(9476454-9476510)
[»] scaffold0055 (6 HSPs)
scaffold0055 (128-174)||(13432-13478)
scaffold0055 (138-174)||(13096-13132)
scaffold0055 (138-174)||(33824-33860)
scaffold0055 (138-174)||(52996-53032)
scaffold0055 (138-174)||(54889-54925)
scaffold0055 (138-174)||(68532-68568)
[»] scaffold0052 (7 HSPs)
scaffold0052 (128-174)||(71057-71103)
scaffold0052 (138-174)||(20024-20060)
scaffold0052 (138-174)||(29296-29332)
scaffold0052 (138-174)||(49904-49940)
scaffold0052 (138-174)||(52495-52531)
scaffold0052 (138-174)||(62204-62240)
scaffold0052 (138-174)||(71403-71439)
[»] scaffold0021 (1 HSPs)
scaffold0021 (138-174)||(48166-48202)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 25524216 - 25524089
Alignment:
Q  88 tgtaattttatttatggacaacgtagctagtcaaaaagttgtgtcggtcacttctcggaaaaacttgtgcccttgtaatgctacgggacacgactannnn 187  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||        
T  25524216 tgtaattttatttatggacaatgtagctagtcaaaaagttgtgtcggtcacttctcgaaaaaacttgtgcccttgtaacgctacggg-cacgactatttt 25524118  T
Q  188 nnnacaaaaatcttgcacatcctttgttat 217  Q
       ||||||| |||||||||||||||||||    
T  25524117 tttacaaaaa-cttgcacatcctttgttat 25524089  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 25523963 - 25523900
Alignment:
Q  282 cacaaaatcttgcacatccttttgtgta--tttcttcagctacgtaaactgtttcttcaattgc 343  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  25523963 cacaaaatcttgcacatccttttgtgtatttttcttcagctacgaaaactgtttcttcaattgc 25523900  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 25523875 - 25523842
Alignment:
Q  368 ccctcatattctgcattcttttgagtctagattt 401  Q
    ||||||||||||||||||||||||||||||||||    
T  25523875 ccctcatattctgcattcttttgagtctagattt 25523842  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 19657176 - 19657230
Alignment:
Q  113 gctagtcaaaaagttgtgtcggtcacttctcggaaaaacttgtgcccttgtaatg 167  Q
    |||||||||||||  |||| |||| |||||| |||||||||||||||||||||||    
T  19657176 gctagtcaaaaagccgtgttggtcccttctcagaaaaacttgtgcccttgtaatg 19657230  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 9485500 - 9485557
Alignment:
Q  110 gtagctagtcaaaaagttgtgtcggtcacttctcggaaaaacttgtgcccttgtaatg 167  Q
    ||||||||||| ||||  ||||||||| ||| ||| ||||||||||||||||||||||    
T  9485500 gtagctagtcataaagccgtgtcggtctcttatcgaaaaaacttgtgcccttgtaatg 9485557  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 9476510 - 9476454
Alignment:
Q  109 cgtagctagtcaaaaagttgtgtcggtcacttctcggaaaaacttgtgcccttgtaa 165  Q
    |||||||||||||||||| ||| || || || |||||||| ||||||||||||||||    
T  9476510 cgtagctagtcaaaaagtcgtgccgttccctactcggaaacacttgtgcccttgtaa 9476454  T

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Target: scaffold0055 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 13432 - 13478
Alignment:
Q  128 gtgtcggtcacttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||| |||| |||||||||||||||||||||||||||| ||| ||||    
T  13432 gtgttggtcccttctcggaaaaacttgtgcccttgtaacgctgcggg 13478  T

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Target: scaffold0055; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 13096 - 13132
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  13096 cttctcggaaaaacttgtgcccttgtaacgctgcggg 13132  T

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Target: scaffold0055; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 33860 - 33824
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  33860 cttctcggaaaaacttgtgcccttgtaacgctgcggg 33824  T

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Target: scaffold0055; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 53032 - 52996
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  53032 cttctcggaaaaacttgtgcccttgtaacgctgcggg 52996  T

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Target: scaffold0055; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 54925 - 54889
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  54925 cttctcggaaaaacttgtgcccttgtaacgctgcggg 54889  T

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Target: scaffold0055; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 68568 - 68532
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  68568 cttctcggaaaaacttgtgcccttgtaacgctgcggg 68532  T

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Target: scaffold0052 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 71103 - 71057
Alignment:
Q  128 gtgtcggtcacttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||| |||| |||||||||||||||||||||||||||| ||| ||||    
T  71103 gtgttggtcccttctcggaaaaacttgtgcccttgtaacgctgcggg 71057  T

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Target: scaffold0052; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 20060 - 20024
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  20060 cttctcggaaaaacttgtgcccttgtaacgctgcggg 20024  T

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Target: scaffold0052; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 29332 - 29296
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  29332 cttctcggaaaaacttgtgcccttgtaacgctgcggg 29296  T

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Target: scaffold0052; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 49940 - 49904
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  49940 cttctcggaaaaacttgtgcccttgtaacgctgcggg 49904  T

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Target: scaffold0052; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 52531 - 52495
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  52531 cttctcggaaaaacttgtgcccttgtaacgctgcggg 52495  T

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Target: scaffold0052; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 62204 - 62240
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  62204 cttctcggaaaaacttgtgcccttgtaacgctgcggg 62240  T

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Target: scaffold0052; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 71439 - 71403
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  71439 cttctcggaaaaacttgtgcccttgtaacgctgcggg 71403  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 48202 - 48166
Alignment:
Q  138 cttctcggaaaaacttgtgcccttgtaatgctacggg 174  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  48202 cttctcggaaaaacttgtgcccttgtaacgctgcggg 48166  T

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