View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_low_29 (Length: 394)
Name: NF8961_low_29
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 35887701 - 35887323
Alignment:
| Q |
1 |
gaaatgtgaagattggttaaattatgctatacctcaccagcttccacatgtgatgttaatttccccacagaataagaaccagaagggcatccttttcttt |
100 |
Q |
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| T |
35887701 |
gaaatgtgaagattggttaaattatgctatacctcaccagcttccacatgtaatgttaatttccccacagaataagaaccagaagggcatccttttcttt |
35887602 |
T |
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| Q |
101 |
tcttggaagaagtttcttcagaagttgtttcagtttcagaaggtccttcttttctcttcttggatggcaatgttgaagaatcactactggtgctgccttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35887601 |
tcttggaagaagtttcttcagaagttgtttcagtttcagaaggtccttcttttctcttcttggatggcaatgttgaagaatcactactggtgctgccttc |
35887502 |
T |
|
| Q |
201 |
attcatcgctacatcgtcatcaccaccctctttctgatgatgatcagtagttgaactgatcatctttgcttctgccttgttcttatgatcctcctccatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35887501 |
attcatcgctacatcgtcatcaccaccctctttctgatcatgatcagtagttgaactgatcatctttgcttctgccttgttcttatgatcctcctccatt |
35887402 |
T |
|
| Q |
301 |
tttgcgccactgacttcattcattgctaaatcatctttctgatcagcagtggaactgatcatctttttctccatatttg |
379 |
Q |
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| T |
35887401 |
tttgcgccactgacttcattcattgctaaatcatctttctgatcagcagtggaactgatcatctttttctccatatttg |
35887323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 35542321 - 35542375
Alignment:
| Q |
76 |
gaaccagaagggcatccttttcttttcttggaagaagtttcttcagaagttgttt |
130 |
Q |
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||||||| ||||| |||||||||||||| ||||||||||||| ||||||| |||| |
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| T |
35542321 |
gaaccaggagggcgtccttttcttttctgggaagaagtttctgcagaagtagttt |
35542375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 35559659 - 35559713
Alignment:
| Q |
76 |
gaaccagaagggcatccttttcttttcttggaagaagtttcttcagaagttgttt |
130 |
Q |
| |
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||||||| ||||| |||||||||||||| ||||||||||||| ||||||| |||| |
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| T |
35559659 |
gaaccaggagggcgtccttttcttttctgggaagaagtttctgcagaagtagttt |
35559713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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