View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_low_3 (Length: 902)

Name: NF8961_low_3
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_low_3
NF8961_low_3
[»] chr8 (19 HSPs)
chr8 (392-888)||(37448485-37448981)
chr8 (1-268)||(37449119-37449384)
chr8 (2-74)||(12898815-12898887)
chr8 (1-74)||(27325870-27325943)
chr8 (1-69)||(32501087-32501155)
chr8 (1-73)||(34186719-34186791)
chr8 (1-72)||(22719552-22719623)
chr8 (1-72)||(42768316-42768387)
chr8 (1-73)||(29025372-29025444)
chr8 (2-76)||(43397894-43397968)
chr8 (1-62)||(36251438-36251499)
chr8 (3-75)||(37133747-37133819)
chr8 (1-72)||(4054174-4054245)
chr8 (2-73)||(24479336-24479407)
chr8 (2-72)||(7271963-7272033)
chr8 (1-62)||(5277397-5277458)
chr8 (1-73)||(11253429-11253501)
chr8 (3-69)||(36816507-36816573)
chr8 (37-74)||(31249422-31249459)
[»] chr3 (41 HSPs)
chr3 (1-91)||(27541371-27541461)
chr3 (1-72)||(32924169-32924240)
chr3 (1-77)||(35597274-35597350)
chr3 (1-77)||(44856065-44856141)
chr3 (1-73)||(52939763-52939835)
chr3 (1-72)||(13735842-13735913)
chr3 (1-72)||(16969454-16969525)
chr3 (1-72)||(42356972-42357043)
chr3 (3-75)||(33939352-33939424)
chr3 (1-73)||(52254025-52254097)
chr3 (1-72)||(36670902-36670973)
chr3 (1-72)||(47472441-47472512)
chr3 (2-72)||(19149103-19149173)
chr3 (5-75)||(38926744-38926814)
chr3 (1-74)||(52326131-52326204)
chr3 (1-69)||(42358529-42358597)
chr3 (1-72)||(26014924-26014995)
chr3 (1-72)||(44413283-44413354)
chr3 (2-72)||(7934087-7934157)
chr3 (1-75)||(13348019-13348093)
chr3 (1-71)||(24256660-24256730)
chr3 (1-74)||(21217624-21217697)
chr3 (1-74)||(37056943-37057016)
chr3 (5-74)||(44813252-44813321)
chr3 (1-74)||(46624019-46624092)
chr3 (1-49)||(20547901-20547949)
chr3 (1-73)||(41309229-41309301)
chr3 (1-68)||(5244341-5244408)
chr3 (3-74)||(35376967-35377038)
chr3 (2-72)||(288839-288909)
chr3 (1-71)||(23592570-23592640)
chr3 (5-75)||(31157562-31157632)
chr3 (1-75)||(37302658-37302732)
chr3 (2-72)||(37503635-37503705)
chr3 (16-77)||(7668071-7668132)
chr3 (1-74)||(44383301-44383374)
chr3 (3-71)||(23600707-23600775)
chr3 (2-78)||(44445407-44445483)
chr3 (1-76)||(5114190-5114265)
chr3 (3-73)||(55151604-55151674)
chr3 (13-76)||(25641467-25641530)
[»] chr4 (36 HSPs)
chr4 (1-76)||(51986154-51986229)
chr4 (1-72)||(53801647-53801718)
chr4 (1-75)||(26732337-26732411)
chr4 (1-74)||(23369218-23369291)
chr4 (1-74)||(44539846-44539919)
chr4 (2-75)||(29175338-29175411)
chr4 (1-78)||(43175096-43175173)
chr4 (1-72)||(15175658-15175729)
chr4 (1-72)||(46213082-46213153)
chr4 (1-75)||(11068800-11068874)
chr4 (1-74)||(37297161-37297233)
chr4 (1-69)||(24575742-24575810)
chr4 (1-73)||(26724859-26724931)
chr4 (3-74)||(10250401-10250472)
chr4 (3-74)||(26492121-26492192)
chr4 (1-72)||(39440596-39440667)
chr4 (1-74)||(38382433-38382506)
chr4 (1-74)||(47181953-47182026)
chr4 (1-74)||(48402083-48402156)
chr4 (1-73)||(5622570-5622642)
chr4 (2-73)||(27050973-27051044)
chr4 (15-73)||(27965111-27965169)
chr4 (5-75)||(31641450-31641520)
chr4 (1-62)||(38134465-38134526)
chr4 (1-74)||(39478549-39478622)
chr4 (1-74)||(56363931-56364004)
chr4 (2-74)||(34616674-34616746)
chr4 (1-73)||(36178018-36178090)
chr4 (2-80)||(2575670-2575748)
chr4 (3-77)||(19473839-19473913)
chr4 (2-72)||(38376378-38376448)
chr4 (3-72)||(39606086-39606155)
chr4 (1-76)||(37997366-37997441)
chr4 (33-72)||(53786103-53786142)
chr4 (37-74)||(2268405-2268442)
chr4 (1-74)||(42853689-42853762)
[»] chr5 (26 HSPs)
chr5 (1-75)||(18258678-18258752)
chr5 (2-74)||(26791130-26791202)
chr5 (1-72)||(33037632-33037703)
chr5 (1-72)||(41321367-41321438)
chr5 (1-74)||(1671654-1671727)
chr5 (1-72)||(28306020-28306091)
chr5 (1-72)||(7287077-7287148)
chr5 (1-71)||(1764336-1764406)
chr5 (1-74)||(36739060-36739133)
chr5 (1-77)||(28467336-28467412)
chr5 (3-62)||(7076466-7076525)
chr5 (6-73)||(35634722-35634789)
chr5 (2-71)||(13168635-13168704)
chr5 (1-74)||(17626098-17626171)
chr5 (2-74)||(1274471-1274542)
chr5 (1-73)||(5168295-5168367)
chr5 (1-73)||(14051202-14051274)
chr5 (1-72)||(14923185-14923256)
chr5 (1-73)||(3565196-3565268)
chr5 (3-75)||(7552852-7552924)
chr5 (1-72)||(15479581-15479652)
chr5 (5-75)||(22972233-22972303)
chr5 (1-74)||(8687003-8687076)
chr5 (2-75)||(39591793-39591866)
chr5 (2-75)||(39592185-39592258)
chr5 (1-69)||(2972436-2972504)
[»] chr2 (26 HSPs)
chr2 (2-75)||(18254094-18254167)
chr2 (1-74)||(22888703-22888776)
chr2 (1-76)||(32477444-32477519)
chr2 (1-75)||(42421783-42421857)
chr2 (1-74)||(43487491-43487564)
chr2 (1-69)||(6049236-6049304)
chr2 (2-73)||(37737858-37737929)
chr2 (2-73)||(41195697-41195768)
chr2 (1-75)||(9760130-9760204)
chr2 (5-75)||(21611540-21611610)
chr2 (1-74)||(1248798-1248871)
chr2 (1-74)||(2076681-2076754)
chr2 (3-75)||(9647246-9647318)
chr2 (3-75)||(9990805-9990877)
chr2 (1-76)||(9194353-9194428)
chr2 (1-71)||(9207702-9207772)
chr2 (1-71)||(34944979-34945049)
chr2 (2-75)||(41042367-41042440)
chr2 (2-74)||(3097747-3097819)
chr2 (1-71)||(41056636-41056706)
chr2 (3-72)||(3838768-3838837)
chr2 (1-74)||(25270468-25270541)
chr2 (3-74)||(13333056-13333127)
chr2 (1-50)||(42091414-42091463)
chr2 (3-73)||(27490617-27490687)
chr2 (37-74)||(22416349-22416386)
[»] chr1 (33 HSPs)
chr1 (1-74)||(27464943-27465016)
chr1 (2-74)||(45121367-45121439)
chr1 (2-77)||(19055642-19055717)
chr1 (1-72)||(26469471-26469542)
chr1 (1-75)||(649881-649955)
chr1 (1-83)||(35369812-35369894)
chr1 (2-72)||(48470752-48470822)
chr1 (1-74)||(31088293-31088366)
chr1 (1-73)||(33100920-33100992)
chr1 (1-72)||(44519039-44519110)
chr1 (1-75)||(23645523-23645597)
chr1 (1-62)||(50932416-50932477)
chr1 (2-78)||(43775319-43775395)
chr1 (1-72)||(44914459-44914531)
chr1 (1-72)||(37619656-37619727)
chr1 (1-75)||(37274918-37274992)
chr1 (1-62)||(3851270-3851331)
chr1 (1-74)||(21401510-21401583)
chr1 (1-73)||(52576188-52576261)
chr1 (5-72)||(8350087-8350153)
chr1 (10-77)||(45640422-45640489)
chr1 (1-72)||(50726136-50726207)
chr1 (2-72)||(3981914-3981984)
chr1 (1-73)||(30735180-30735252)
chr1 (36-77)||(41677219-41677260)
chr1 (1-74)||(46907307-46907380)
chr1 (3-76)||(50149060-50149133)
chr1 (1-72)||(2571747-2571819)
chr1 (3-75)||(18434909-18434981)
chr1 (1-69)||(45333823-45333891)
chr1 (18-76)||(50333337-50333395)
chr1 (1-46)||(8828035-8828080)
chr1 (13-74)||(9566846-9566907)
[»] chr7 (20 HSPs)
chr7 (1-77)||(38956501-38956577)
chr7 (1-75)||(3937008-3937082)
chr7 (1-72)||(44895460-44895531)
chr7 (1-75)||(25192802-25192876)
chr7 (1-72)||(22918057-22918128)
chr7 (11-82)||(41989618-41989689)
chr7 (1-71)||(32529745-32529815)
chr7 (1-75)||(43942744-43942818)
chr7 (1-74)||(46022153-46022226)
chr7 (1-73)||(24614203-24614275)
chr7 (2-73)||(43025453-43025524)
chr7 (1-74)||(7701656-7701729)
chr7 (5-73)||(40112841-40112909)
chr7 (2-73)||(35098590-35098661)
chr7 (3-72)||(45851095-45851164)
chr7 (10-73)||(3614333-3614396)
chr7 (2-73)||(35072249-35072320)
chr7 (1-72)||(40417886-40417957)
chr7 (1-73)||(41189428-41189502)
chr7 (2-76)||(33578200-33578274)
[»] chr6 (14 HSPs)
chr6 (1-72)||(552905-552976)
chr6 (3-75)||(15974722-15974794)
chr6 (1-73)||(32316815-32316887)
chr6 (1-75)||(33430247-33430321)
chr6 (1-72)||(31077906-31077977)
chr6 (1-83)||(26595461-26595543)
chr6 (1-72)||(13689882-13689953)
chr6 (1-67)||(18737460-18737526)
chr6 (1-74)||(16199562-16199635)
chr6 (10-75)||(34047508-34047573)
chr6 (1-72)||(5694039-5694110)
chr6 (1-72)||(14818044-14818115)
chr6 (2-73)||(1156833-1156904)
chr6 (1-71)||(11612300-11612370)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-75)||(76504-76578)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-77)||(8780-8856)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-72)||(49407-49478)
[»] scaffold0519 (1 HSPs)
scaffold0519 (1-73)||(11894-11966)
[»] scaffold0067 (1 HSPs)
scaffold0067 (38-72)||(35660-35694)


Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 392 - 888
Target Start/End: Complemental strand, 37448981 - 37448485
Alignment:
Q  392 cttatagtaactatctttcttgacatgcaaacaagtttatcacaaaacaaaagacaccgcgtaaatggttttaaaattgccgtttttcacatgaatatat 491  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37448981 cttatagtaactatctttcttgacatgcaaacaagattatcacaaaacaaaagacaccgcataaatggttttaaaattgccgtttttcacatgaatatat 37448882  T
Q  492 gcaaaggtcttacacagttacacccacaccgtgataacattattaacatttaacaccaccgaggcaacggctccaacaaaaccatcttcaataagcaata 591  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37448881 gcaaaggtcttgcacagttacacccacaccgtgataacattattaacatttaacaccaccgaggcaacggctccaacaaaaccatcttcaataagcaata 37448782  T
Q  592 gccgatatcttgctggtaactatcacaggcaacaaccgattgaatcagactttcaacaagttatatactatttttctccttcttagaccttgtcaaaatt 691  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37448781 gccgatatcttgctggtaaccatcacaggcaacaaccgattgaatcagactttcaacaagttatatactatttttctccttcttagaccttgtcaaaatt 37448682  T
Q  692 tattgatagttgtgaagagagaatacaaatttcacatgataaggtcgcttgaaattttgacatgagatgattcattccactctaatcacttctgatactg 791  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37448681 tattgatagttgtgaagagagaatacaaatttcacatgataaggtcgcttgaaattttgacatgagatgattcattccactctaatcacttctgatactg 37448582  T
Q  792 aaaacaagnnnnnnnaaattggatggggacacaaacgattttacatgttgaggcttttgacagactctcataaaccacacgcctttctatatgatgt 888  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37448581 aaaacaagtttttttaaattggatggggacacaaacgattttacatgttgaggcttttgacagactctcttaaaccacacgcctttctatatgatgt 37448485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 37449384 - 37449119
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttttataattcataattcatttgccta 100  Q
    ||||||||||||||||||||||||  | || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37449384 cctcatttcctttgtaaaattttgattatcacaaaagttatcacatatatggatattcaaataacacaactctttttataattcataattcatttgccta 37449285  T
Q  101 tatatacaaaaaagatgttgtccaaaaacaatcacatgcattcaatcatatatgagagaacatgacacattaagggctcacatgaagttcgtcattttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  37449284 tatatacaaaaaagatgttgtccaaaaacaatcacatgcattcaatcatatatgagagaacatgacacat--agggctcacatgaagttcgttattttag 37449187  T
Q  201 tctttaaagtatataaagatatgtttatttctgtaaagattgcttatttaattgatatactgtatacc 268  Q
    ||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||||||    
T  37449186 tctttaaagtatataaagatatacttatttctgtaaagactgcttatttaattgatatattgtatacc 37449119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 12898887 - 12898815
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||| |||||||    
T  12898887 ctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacataactctt 12898815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27325870 - 27325943
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||||||  | || | ||||||||||||||||||||| ||||||| |||||||||||    
T  27325870 cctcatttcctttgtaaaattttgattatcacgaaagttgtcacatatatggatgttcaaataacacaactctt 27325943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 32501155 - 32501087
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaa 69  Q
    ||||||||||||||||||||||||| |||| ||||| || |||||||||||||| ||||||| ||||||    
T  32501155 cctcatttcctttgtaaaattttggttgtcacaaaaattctcacatatatggatgttcaaataacacaa 32501087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34186719 - 34186791
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||||||||| |||||||||  |||| ||||||||||||||| ||||||| ||||||| ||||||||||    
T  34186719 cctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatgtatggatgttcaaataacacaactct 34186791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 22719552 - 22719623
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||| |||||||||||||||| | || ||||||||||||||||||||| | ||||||| |||||||||    
T  22719552 cctcattttctttgtaaaattttggttatcacaaaagttgtcacatatatggctgttcaaataacacaactc 22719623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42768316 - 42768387
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||| | |||| ||||| || |||||||||||||| ||||||| |||||||||    
T  42768316 cctcatttcctttgtaaaattttagttgtcacaaaaattatcacatatatggatgttcaaataacacaactc 42768387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29025372 - 29025444
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| |||||||||||||||| |||| |||||||||||| ||| |||||| || |||| ||||||||||    
T  29025372 cctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgtttaaataacacaactct 29025444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 43397894 - 43397968
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    ||||||| |||||||||||||||| |||| |||||| |||||||| ||||||| ||||| | ||||| |||||||    
T  43397894 ctcattttctttgtaaaattttggttgtcacaaaagctgtcacatgtatggatgttcaattaacacatctctttt 43397968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36251438 - 36251499
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaat 62  Q
    ||||||||||||||||||||||||  |||| | |||||| |||||||||||||| |||||||    
T  36251438 cctcatttcctttgtaaaattttgattgtcacgaaagttatcacatatatggatgttcaaat 36251499  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 37133819 - 37133747
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||| |||||||||||||||| |||| ||||||||||||  || |||||| || |||| ||||||||||||    
T  37133819 tcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttaaaataacacaactcttt 37133747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4054245 - 4054174
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||| |||||||| |||||  |||| |||||||||||||||||||  || ||||||| |||||||||    
T  4054245 cctcatttcatttgtaaagttttgattgtcacaaaagttgtcacatatataaatgttcaaataacacaactc 4054174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 24479336 - 24479407
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||||||||||||||||| | |||| |||||||| ||| ||||||| ||  |||||| ||||||||||    
T  24479336 ctcatttcctttgtaaaattttagttgtcacaaaagttatcatatatatgaatgctcaaataacacaactct 24479407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 7271963 - 7272033
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||| |||| |||||||||  |||| ||||||||||||||| ||||||| |||| || |||||||||    
T  7271963 ctcatttcttttgcaaaattttgattgtcacaaaagttgtcacatgtatggatgttcatataacacaactc 7272033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5277458 - 5277397
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaat 62  Q
    ||||||||||||||||||||||||  |||| || || ||||||||| ||||||| |||||||    
T  5277458 cctcatttcctttgtaaaattttgattgtcacataaattgtcacatgtatggatgttcaaat 5277397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11253501 - 11253429
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| ||||||||||||||||  ||| |||||||||||| || ||| ||| ||||||| | ||||||||    
T  11253501 cctcattttctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttcaaataatacaactct 11253429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 36816573 - 36816507
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaa 69  Q
    |||||| ||||| |||||||||  | || ||||||||||||||||||| ||| ||||||| ||||||    
T  36816573 tcattttctttgcaaaattttgattatcacaaaagttgtcacatatatagatgttcaaataacacaa 36816507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 31249459 - 31249422
Alignment:
Q  37 gttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  31249459 gttgtcacatatatggatgttcaaataacacaactctt 31249422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 7e-27; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 27541461 - 27541371
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttttataattcataattc 91  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||| ||||    
T  27541461 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctttatattattcatcattc 27541371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32924240 - 32924169
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  32924240 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 32924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35597274 - 35597350
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||||| |||||    
T  35597274 cctcgtttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatattcaaataacacaacttttttt 35597350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44856065 - 44856141
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    ||||||||||||||||||||||||| ||||  | |||||||||||||||||||| ||||||| ||||||||||||||    
T  44856065 cctcatttcctttgtaaaattttggttgtcatacaagttgtcacatatatggatgttcaaataacacaactcttttt 44856141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 52939763 - 52939835
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||| ||||||||||    
T  52939763 cctcatttcctttgtaaaattttggttgtcacgaaagttgtcacatatatggatgttcaaataacacaactct 52939835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13735842 - 13735913
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  13735842 cctcatttcctttgcaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 13735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 16969525 - 16969454
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  16969525 cctcatttcctttgtaaaattttagttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 16969454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42357043 - 42356972
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||| |||||||||    
T  42357043 cctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 42356972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 33939352 - 33939424
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||||||| | |||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||    
T  33939352 tcatttcctttgaataattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 33939424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52254097 - 52254025
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||||||||||||| | |||| ||||| ||||||||||||||||| ||||||| ||||||||||    
T  52254097 cctcatttcctttgtaaaattttagttgtcacaaaaattgtcacatatatggatgttcaaatgacacaactct 52254025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 36670973 - 36670902
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||| ||||||||||||||| |||| |||||||| |||||||||||||| ||||||| |||||||||    
T  36670973 cctcatttcatttgtaaaattttggttgtcacaaaagttatcacatatatggatgttcaaataacacaactc 36670902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47472441 - 47472512
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||| ||| |||||    
T  47472441 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacataactc 47472512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 19149103 - 19149173
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||||||||||||||||||  |||| ||||| ||||||||||||||||| ||||||| |||||||||    
T  19149103 ctcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 19149173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 38926744 - 38926814
Alignment:
Q  5 atttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||| ||| ||||||| ||||||||||||    
T  38926744 atttcctttgtaaaattttggttgtcacgaaagttgtcacatatatagatgttcaaataacacaactcttt 38926814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 52326131 - 52326204
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||||||  ||||  ||||||||||| |||||||||| ||||||| |||||||||||    
T  52326131 cctcatttcctttgtaaaattttgattgtcataaaagttgtcatatatatggatgttcaaataacacaactctt 52326204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42358597 - 42358529
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaa 69  Q
    |||||||||||||| |||||||||  |||| ||||||||||||||||||||||| ||||||| ||||||    
T  42358597 cctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaa 42358529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26014924 - 26014995
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| ||| ||| || |||| |||||||||    
T  26014924 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatgtatagatgtttaaataacacaactc 26014995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44413354 - 44413283
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||||||||||||||||||   |||| ||||||||||||||||||| ||| ||||||| |||||||||    
T  44413354 cctcatttcctttgtaaaattttaattgtcacaaaagttgtcacatatatagatgttcaaataacacaactc 44413283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 7934087 - 7934157
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||| |||||||||||||||| | |||| ||||| ||||||||||||||||| ||||||| |||||||||    
T  7934087 ctcatatcctttgtaaaattttagttgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 7934157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13348093 - 13348019
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||| |||||||||||||||| |||| |||||||||||| ||| |||||| ||||||| ||| ||||||||    
T  13348093 cctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataacataactcttt 13348019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 24256730 - 24256660
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    |||||||||||||||||||||||   |||| ||||||||||||||||||| ||| ||||||| ||||||||    
T  24256730 cctcatttcctttgtaaaattttaattgtcacaaaagttgtcacatatatagattttcaaataacacaact 24256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21217624 - 21217697
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  21217624 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 21217697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37057016 - 37056943
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| ||||||||||| |||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  37057016 cctcattttctttgtaaaatattggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 37056943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 44813252 - 44813321
Alignment:
Q  5 atttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||  || | ||||||||||||||||||| ||| ||||||| |||||||||||    
T  44813252 atttcctttgtaaaattttgattgccacaaaagttgtcacatatatagatgttcaaatcacacaactctt 44813321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46624019 - 46624092
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||||||||||||||  |||| |||||||| |||||| ||||||| ||||||| |||||||||||    
T  46624019 cctcattttctttgtaaaattttgattgtcacaaaagttatcacatgtatggatgttcaaataacacaactctt 46624092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20547949 - 20547901
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatata 49  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  20547949 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatata 20547901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41309229 - 41309301
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| |||||||||||||||  |||| |||||||| || ||||||||||| ||||||| ||||||||||    
T  41309229 cctcattttctttgtaaaattttgattgtcacaaaagttatcgcatatatggatgttcaaataacacaactct 41309301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 5244341 - 5244408
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacaca 68  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||||  || ||||||| |||||    
T  5244341 cctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatataaatgttcaaataacaca 5244408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 35377038 - 35376967
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||| |||||||||||||||| |||| ||||||||||||  || |||||| ||||||| |||||||||||    
T  35377038 tcattttctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactctt 35376967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 288839 - 288909
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||| ||||||||||||||  |||  ||| ||||||||||||||||||| ||||||| |||||||||    
T  288839 ctcatttcttttgtaaaattttgattgttacaatagttgtcacatatatggattttcaaataacacaactc 288909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23592570 - 23592640
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| ||||||||    
T  23592570 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23592640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 31157632 - 31157562
Alignment:
Q  5 atttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||   ||| || ||||| |||||||||||||| ||||||| ||||||||||||    
T  31157632 atttcctttgtaaaattttgatagtcacagaagttatcacatatatggatgttcaaataacacaactcttt 31157562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37302658 - 37302732
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||||||||| |||||||||  |||| |||||||||||| || ||||||| ||||||| | ||||||||||    
T  37302658 cctcatttcctttgcaaaattttgattgtcacaaaagttgtcaaatgtatggatgttcaaataagacaactcttt 37302732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 37503705 - 37503635
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||| |||||||||| |||| |||||||| ||||||||||  || ||||||| |||||||||    
T  37503705 ctcatttcctttgcaaaattttggttgtcacaaaagttatcacatatataaatgttcaaataacacaactc 37503635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 7668132 - 7668071
Alignment:
Q  16 aaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    |||||||||| |||| ||||||||||||||| ||||||| ||||||| |||||| |||||||    
T  7668132 aaaattttggttgtcacaaaagttgtcacatgtatggatgttcaaataacacaattcttttt 7668071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44383301 - 44383374
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||  |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  44383301 cctcattttctttataaaattttgattgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 44383374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 23600707 - 23600775
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    |||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| ||||||||    
T  23600707 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 44445407 - 44445483
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttta 78  Q
    ||||||| |||| ||||||||||| ||||  ||||||||| |||||||| ||| ||||||| ||| |||||||||||    
T  44445407 ctcattttctttataaaattttggttgtcataaaagttgttacatatatcgatgttcaaataacataactcttttta 44445483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5114190 - 5114265
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    |||||||| |||||||||||||||  ||||  |||| |||||||||| || ||| ||||||| |||||||||||||    
T  5114190 cctcattttctttgtaaaattttgattgtcataaaaattgtcacataaatagatgttcaaataacacaactctttt 5114265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 55151674 - 55151604
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||||||||||||||||   |||  |||||||||||||||||||  || ||||||| ||||||||||    
T  55151674 tcatttcctttgtaaaattttaattgtaacaaaagttgtcacatatataaatgttcaaataacacaactct 55151604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 25641530 - 25641467
Alignment:
Q  13 tgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    ||||||| ||||| |||| |||||||||||| ||| |||||| ||||||| | |||||||||||    
T  25641530 tgtaaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataatacaactctttt 25641467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 51986154 - 51986229
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||||    
T  51986154 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctttt 51986229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 53801718 - 53801647
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  53801718 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 53801647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26732337 - 26732411
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||    
T  26732337 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 26732411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23369291 - 23369218
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  23369291 cctcatttcctttgtaagattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 23369218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44539846 - 44539919
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||| |||||||||||    
T  44539846 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactctt 44539919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 29175338 - 29175411
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||||| || ||||||| ||||||||||||    
T  29175338 ctcatttactttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcttt 29175411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 43175096 - 43175173
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttta 78  Q
    ||||||||||||||||||||||||  | || ||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  43175096 cctcatttcctttgtaaaattttgattatcacaaaagttgtcacatatatggatgttcaaataacacaactcatttta 43175173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 15175658 - 15175729
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||| | |||||||    
T  15175658 cctcatttcctttgtaaaattttggttgtaacaaaagttgtcacatatatggatgttcaaataatacaactc 15175729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 46213082 - 46213153
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||  |||||||| |||||||||||||| ||||||| |||||||||    
T  46213082 cctcatttcctttgtaaaattttggttgttacaaaagttttcacatatatggattttcaaataacacaactc 46213153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11068800 - 11068874
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||||||| || | |||||||||||||||||||| || ||||||| |||||| |||||    
T  11068800 cctcatttcctttgtaaaattttggttgccacaaaagttgtcacatatatgaatgttcaaataacacaattcttt 11068874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37297161 - 37297233
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||||||| |||||||||||| |||| |||||||||||| |||||||||| ||||||| |||||||||||    
T  37297161 cctcatttcctt-gtaaaattttggttgtcacaaaagttgtcaaatatatggatgttcaaataacacaactctt 37297233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 24575810 - 24575742
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaa 69  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||||||| ||| ||||||| ||||||    
T  24575810 cctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacacaa 24575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 26724931 - 26724859
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||||||||||||| | |||  |||||||| |||||||||||||| ||||||| ||||||||||    
T  26724931 cctcatttcctttgtaaaattttagttgttacaaaagttatcacatatatggatgttcaaataacacaactct 26724859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 10250472 - 10250401
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||| |||||||||||||||| |||| ||||||||||| ||||||||||| ||||||| |||||| ||||    
T  10250472 tcattttctttgtaaaattttggttgtcacaaaagttgtcgcatatatggatgttcaaataacacaattctt 10250401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 26492121 - 26492192
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||||  |||| ||||| ||||||||||||| ||| ||||||| |||||||||||    
T  26492121 tcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatagatgttcaaataacacaactctt 26492192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39440596 - 39440667
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||| ||||||||||  |||| |||||||||||||||||||| || ||||||| |||||||||    
T  39440596 cctcatttcctttctaaaattttgattgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 39440667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38382433 - 38382506
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  38382433 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 38382506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 47181953 - 47182026
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  47181953 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 47182026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 48402156 - 48402083
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  48402156 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 48402083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5622570 - 5622642
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||||||||||||| | | || |||||||||| |||||||| ||| ||||||| ||||||||||    
T  5622570 cctcatttcctttgtaaaattttagttatcacaaaagttgtgacatatatagatcttcaaataacacaactct 5622642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 27051044 - 27050973
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||| |||| || ||||||| ||||| ||||    
T  27051044 ctcattttctttgtaaaattttggttgtcacaaaagttgtcacatttatgaatgttcaaataacacatctct 27050973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 27965111 - 27965169
Alignment:
Q  15 taaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||| |||| || |||||||||||||||||||| ||||||| ||||||||||    
T  27965111 taaaattttggttgtcacagaagttgtcacatatatggatgttcaaataacacaactct 27965169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 31641520 - 31641450
Alignment:
Q  5 atttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||| ||||||||||| |||| |||||||| |||| |||||| || ||||||| ||||||||||||    
T  31641520 atttcctttataaaattttggttgtcacaaaagttatcacgtatatgaatgttcaaataacacaactcttt 31641450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38134465 - 38134526
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaat 62  Q
    ||||||||||||||||||||||||| | || ||||||||||||||| |||| || |||||||    
T  38134465 cctcatttcctttgtaaaattttggttatcacaaaagttgtcacatgtatgaatgttcaaat 38134526  T

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Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39478549 - 39478622
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||||||||||||||| |||| |||||||||||| |||||||||| || ||   |||||||||||    
T  39478549 cctcattttctttgtaaaattttggttgtcacaaaagttgtcatatatatggatgtttaataaacacaactctt 39478622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 56364004 - 56363931
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| ||||||||||||  || |||||| ||||||| |||||||||||    
T  56364004 cctcattttctttataaaattttggttgtctcaaaagttgtcatgtaaatggatgttcaaataacacaactctt 56363931  T

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Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 34616674 - 34616746
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||| |||| ||||||||||| |||| |||||||||||| ||| || ||| ||||||| |||||||||||    
T  34616674 ctcattttctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaactctt 34616746  T

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Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36178018 - 36178090
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||| ||||||||| | |||| |||||||| ||||||||||  || ||||||| ||||||||||    
T  36178018 cctcatttcctttataaaattttagttgtcacaaaagttatcacatatataaatgttcaaataacacaactct 36178090  T

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Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 2575748 - 2575670
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttttata 80  Q
    ||||||| |||||||||| ||| | |||| |||||||||||| ||| || ||| ||||||| ||||||||||| |||||    
T  2575748 ctcattttctttgtaaaactttagttgtcacaaaagttgtcatataaatagatgttcaaataacacaactcttgttata 2575670  T

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Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 19473913 - 19473839
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    |||||| |||||||||||||||  |||| |||||||||||| ||| ||| || ||||||| |||||| |||||||    
T  19473913 tcattttctttgtaaaattttgattgtctcaaaagttgtcatataaatgcatcttcaaataacacaaatcttttt 19473839  T

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Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 38376448 - 38376378
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||| |||||||||||||||  |||| ||||| || |||||||||| ||| ||||||| |||||||||    
T  38376448 ctcattttctttgtaaaattttgattgtcacaaaaattatcacatatatagatgttcaaataacacaactc 38376378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 39606086 - 39606155
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||| ||||||||||| | ||| ||||||||||||||||||  || ||||||| | |||||||    
T  39606086 tcatttcctttataaaattttggttatcgtaaaagttgtcacatatataaatgttcaaataatacaactc 39606155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 37997366 - 37997441
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    |||||||| |||||||||||||||| |||  ||||| || |||||||||| ||| |||||||  |||| |||||||    
T  37997366 cctcattttctttgtaaaattttggttgtaacaaaaattatcacatatatagatgttcaaatagcacagctctttt 37997441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 53786142 - 53786103
Alignment:
Q  33 aaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  53786142 aaaagttgtcacatatatggatgttcaaataacacaactc 53786103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 2268442 - 2268405
Alignment:
Q  37 gttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  2268442 gttgtcacatatatggatgttcaaataacacaactctt 2268405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42853689 - 42853762
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||  |||| ||||| |||||||  | |||||| ||||||| |||||||||||    
T  42853689 cctcattttctttataaaattttgattgtctcaaaaattgtcactcaaatggatgttcaaataacacaactctt 42853762  T

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Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 18258752 - 18258678
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||    
T  18258752 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 18258678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 26791202 - 26791130
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  26791202 ctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 26791130  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33037632 - 33037703
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  33037632 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 33037703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 41321367 - 41321438
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||    
T  41321367 cctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatatggatattcaaataacacaactc 41321438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1671654 - 1671727
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  1671654 cctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 1671727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28306091 - 28306020
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  28306091 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 28306020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7287148 - 7287077
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||| || ||||||| |||||||||    
T  7287148 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 7287077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1764336 - 1764406
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||| || ||||||| ||||||||    
T  1764336 cctcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaact 1764406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36739060 - 36739133
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||| ||||||||||||||| |||| ||||| || |||||||||||||| ||||||| |||||||||||    
T  36739060 cctcatttcttttgtaaaattttggttgtcacaaaaattatcacatatatggatgttcaaataacacaactctt 36739133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28467412 - 28467336
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    ||||||||||||| ||||||||||| |||| ||||| |||||||||||||| || |||| || ||||||||||||||    
T  28467412 cctcatttcctttataaaattttggttgtcacaaaaattgtcacatatatgaatgttcagataacacaactcttttt 28467336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 7076525 - 7076466
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaat 62  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||    
T  7076525 tcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaat 7076466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 35634789 - 35634722
Alignment:
Q  6 tttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||||||||||||||| | ||  |||||||||||||||||||||| ||||||| ||||||||||    
T  35634789 tttcctttgtaaaattttggttatcataaaagttgtcacatatatggatgttcaaataacacaactct 35634722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 13168635 - 13168704
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||| || || |||| ||||||||    
T  13168635 ctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatgaatgttgaaataacacaact 13168704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17626098 - 17626171
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  17626098 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 17626171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 1274471 - 1274542
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||| ||||||||||||||||| || |  |||||||||||||||||||||| ||||||| |||||||||||    
T  1274471 ctcattccctttgtaaaattttggttg-cataaaagttgtcacatatatggatgttcaaataacacaactctt 1274542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5168295 - 5168367
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| |||||||||||||| | |||| |||||||||||| ||||||| || ||||||| ||||||||||    
T  5168295 cctcattttctttgtaaaattttagttgtcacaaaagttgtcatatatatgaatgttcaaataacacaactct 5168367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14051274 - 14051202
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| |||||||||||||||| |||| |||||||| |||||||||||||| ||  ||| ||||||||||    
T  14051274 cctcattttctttgtaaaattttggttgtcacaaaagttatcacatatatggatgtttgaataacacaactct 14051202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14923185 - 14923256
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||| ||||||||||||||| | || | ||||||||||||||||| ||| ||||||| |||||||||    
T  14923185 cctcatttcttttgtaaaattttggttttcacgaaagttgtcacatatatcgatgttcaaataacacaactc 14923256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3565196 - 3565268
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| |||||||||||||||| |||| |||||||||||||  |  ||||| ||||||| ||||||||||    
T  3565196 cctcattttctttgtaaaattttggttgtctcaaaagttgtcactcaagtggatgttcaaataacacaactct 3565268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 7552924 - 7552852
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||| ||||| |||||||||| |||| ||||||||||||  || |||||| ||||||| ||||||||||||    
T  7552924 tcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactcttt 7552852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 15479581 - 15479652
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||  |||||||||||||   |||| ||||||||||||||| ||||||| ||||||| |||||||||    
T  15479581 cctcattttttttgtaaaattttaattgtcacaaaagttgtcacatttatggatgttcaaataacacaactc 15479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 22972233 - 22972303
Alignment:
Q  5 atttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||| |||||||||||||| | |||| |||||||||| | ||| |||||| ||||||| ||||||||||||    
T  22972233 attttctttgtaaaattttagttgtctcaaaagttgttatataaatggatgttcaaataacacaactcttt 22972303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8687003 - 8687076
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||||||||||||||  |||   ||||||||||||||||||| || ||||||| |||| ||||||    
T  8687003 cctcattttctttgtaaaattttgattgttataaaagttgtcacatatatgaatgttcaaataacactactctt 8687076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 39591793 - 39591866
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||| |||||||||| ||||| |||| |||| ||||||| ||| || ||| ||||||| ||||||||||||    
T  39591793 ctcattttctttgtaaaactttggttgtcacaaaggttgtcatataaatagatgttcaaataacacaactcttt 39591866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 39592185 - 39592258
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||| |||||||||| ||||| |||| |||| ||||||| ||| || ||| ||||||| ||||||||||||    
T  39592185 ctcattttctttgtaaaactttggttgtcacaaaggttgtcatataaatagatgttcaaataacacaactcttt 39592258  T

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Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2972436 - 2972504
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaa 69  Q
    |||||||||||| || ||||||||  |||| |||||||||||||||||||  || ||||||| ||||||    
T  2972436 cctcatttccttcgtgaaattttgattgtcacaaaagttgtcacatatataaatgttcaaataacacaa 2972504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 18254167 - 18254094
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||||    
T  18254167 ctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 18254094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22888776 - 22888703
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  22888776 cctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 22888703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32477444 - 32477519
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||||||||| || ||||||| |||||||||||||    
T  32477444 cctcatttcctttgtcaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactctttt 32477519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42421857 - 42421783
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||| || ||||||| ||||||||||||    
T  42421857 cctcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcttt 42421783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 43487491 - 43487564
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||||| ||||||| |||||||||||    
T  43487491 cctcatttcctttgtaaaattttggttgttacaaaaattgtcacatatatggatgttcaaataacacaactctt 43487564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6049304 - 6049236
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaa 69  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||| ||||||    
T  6049304 cctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaa 6049236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 37737929 - 37737858
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||||  ||||||| ||||||||||    
T  37737929 ctcatttcctttgtaaagttttggttgtcacaaaagttgtcacatatatggacgttcaaataacacaactct 37737858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 41195697 - 41195768
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||||||| || ||||||| ||||||||||    
T  41195697 ctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgaatgttcaaataacacaactct 41195768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 9760130 - 9760204
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||||||| | |||||||||| |||| ||||||||||||||||||| ||| ||||||| ||||||||||||    
T  9760130 cctcatttccttggaaaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacacaactcttt 9760204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 21611610 - 21611540
Alignment:
Q  5 atttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||| ||||||||||||||| ||||  |||||||||||||||||||||| ||||||| ||||||||||||    
T  21611610 atttcatttgtaaaattttggttgtcataaaagttgtcacatatatggatgttcaaataacacaactcttt 21611540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1248798 - 1248871
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||||||||||||||||||   | || ||||||||||||||||||||||| ||||||| |||||||||||    
T  1248798 cctcatttcctttgtaaaattttaattatcacaaaagttgtcacatatatggatgttcaaataacacaactctt 1248871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2076681 - 2076754
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||| ||| ||| ||||||| |||||||||||    
T  2076681 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatctattgatgttcaaataacacaactctt 2076754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 9647246 - 9647318
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||||| |||| |||||||| || |||||||| || ||||||| ||||||||||||    
T  9647246 tcatttcctttgtaaaattttggttgtcacaaaagttatcgcatatatgaatgttcaaataacacaactcttt 9647318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 9990805 - 9990877
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||||||||||||||||   |||| |||||||| |||||||||||||| ||||||| ||||||||||||    
T  9990805 tcatttcctttgtaaaattttaattgtcacaaaagttatcacatatatggatgttcaaataacacaactcttt 9990877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 9194353 - 9194428
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    ||||||||| ||||||||||||||| |||| ||||| |||| ||||||||| || ||||||| |||||||||||||    
T  9194353 cctcatttcttttgtaaaattttggttgtcacaaaaattgttacatatatgaatgttcaaataacacaactctttt 9194428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9207702 - 9207772
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    ||||||||||||||||||||||||| |||| ||||| || |||||||||| ||| ||||||| ||||||||    
T  9207702 cctcatttcctttgtaaaattttggttgtcacaaaaattatcacatatatagatgttcaaataacacaact 9207772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34945049 - 34944979
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    ||||||||| ||||||||||||||| |||| | |||||||||||||||||| |||||||| | ||||||||    
T  34945049 cctcatttcttttgtaaaattttggttgtcacgaaagttgtcacatatatgaatattcaattaacacaact 34944979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 41042367 - 41042440
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||||||| ||||||||||| ||||  |||| ||||||||||||||||| ||||||| ||| ||||||||    
T  41042367 ctcatttcctttataaaattttggttgtcataaaaattgtcacatatatggatgttcaaataacagaactcttt 41042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 3097819 - 3097747
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  3097819 ctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 3097747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 41056706 - 41056636
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| ||||||||    
T  41056706 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 41056636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 3838837 - 3838768
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||||||||||||||||   | || ||||||||||||||||||| ||| ||||||| |||||||||    
T  3838837 tcatttcctttgtaaaattttaattatcacaaaagttgtcacatatatagatgttcaaataacacaactc 3838768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25270541 - 25270468
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| | |||||||||| ||| |||||| ||||||| |||||||||||    
T  25270541 cctcattttctttataaaattttggttgtctcgaaagttgtcatataaatggatgttcaaataacacaactctt 25270468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 13333127 - 13333056
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||| |||| ||||||||||| |||| |||||||||||| ||| || ||| ||||||| |||||||||||    
T  13333127 tcattttctttataaaattttggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaactctt 13333056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 42091463 - 42091414
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatat 50  Q
    |||| |||||||||||||||||||| |||| ||||| |||||||||||||    
T  42091463 cctcgtttcctttgtaaaattttggttgtcacaaaaattgtcacatatat 42091414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 27490687 - 27490617
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||| |||||||||||||||  |||| ||||||||||||   | |||||| ||||||| ||||||||||    
T  27490687 tcattttctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacacaactct 27490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 22416349 - 22416386
Alignment:
Q  37 gttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  22416349 gttgtcacatatatggatgttcaaataacacaactctt 22416386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27465016 - 27464943
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  27465016 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 27464943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 45121439 - 45121367
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  45121439 ctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 45121367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 19055717 - 19055642
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  19055717 ctcatttcctttgtaaaattttagttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttttt 19055642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26469471 - 26469542
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  26469471 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 26469542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 649881 - 649955
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||| ||||||||||||    
T  649881 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatgtggatgttcaaataacacaactcttt 649955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35369812 - 35369894
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttttataatt 83  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||| ||| |||| |||||    
T  35369812 cctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacacctcattttttaatt 35369894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 48470752 - 48470822
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  48470752 ctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 48470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31088293 - 31088366
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||  ||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  31088293 cctcattttttttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 31088366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33100920 - 33100992
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||| || ||||||| ||||||||||    
T  33100920 cctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactct 33100992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44519110 - 44519039
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| | || |||||||||||||||||||| || ||||||| |||||||||    
T  44519110 cctcatttcctttgtaaaattttggttatcacaaaagttgtcacatatatgaatgttcaaataacacaactc 44519039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 23645523 - 23645597
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||||||| |||| |||||||||| ||||||||| || ||||||| ||| ||||||||    
T  23645523 cctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgtatgttcaaataacataactcttt 23645597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50932416 - 50932477
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaat 62  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||||||| |||||||    
T  50932416 cctcatttcctttgtaaaattttggttgtaacaaaagttgtcacatatatggatgttcaaat 50932477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 43775319 - 43775395
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttta 78  Q
    ||||||| |||||||||||||||  ||||  ||||||||||||||||||| |||||||||| |||||| ||||||||    
T  43775319 ctcattttctttgtaaaattttgattgtcataaaagttgtcacatatatgaatattcaaataacacaagtcttttta 43775395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44914531 - 44914459
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaag-ttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||  ||||||||||  ||||||||||||||||| ||||||| |||||||||    
T  44914531 cctcatttcctttgtaaaattttgattgtcgcaaaaaattgtcacatatatggatgttcaaataacacaactc 44914459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37619656 - 37619727
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||   |||||||||||||||||||||| ||||||| ||| |||||    
T  37619656 cctcatttcctttgtaaaattttggttgtaataaaagttgtcacatatatggatgttcaaataacataactc 37619727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37274992 - 37274918
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||||||||| |||||||||  |||| ||||||||||||||| || |||| ||||||| ||||||||||||    
T  37274992 cctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatgtaaggatgttcaaataacacaactcttt 37274918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3851270 - 3851331
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaat 62  Q
    ||||||||||||| ||||||||||| ||||  |||||||||||||||||||||| |||||||    
T  3851270 cctcatttcctttataaaattttggttgtcataaaagttgtcacatatatggatgttcaaat 3851331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21401510 - 21401583
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||||||||||||||  |||  |||||||||||||||| |||||| ||||||| |||||||||||    
T  21401510 cctcattttctttgtaaaattttgattgtttcaaaagttgtcacataaatggatgttcaaataacacaactctt 21401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 52576261 - 52576188
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatgga-tattcaaattacacaactct 73  Q
    ||||||||||||||||||||||||| |||| ||||||||||||| |||||| | | ||||||| ||||||||||    
T  52576261 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacctatatgaattgttcaaataacacaactct 52576188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 8350153 - 8350087
Alignment:
Q  5 atttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||||| ||||||| |||||||||    
T  8350153 atttcctttgtaaa-ttttggttgtcacgaaagttgtcacatatatggatgttcaaataacacaactc 8350087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 45640422 - 45640489
Alignment:
Q  10 ctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    |||||||||||||||| ||   ||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  45640422 ctttgtaaaattttggttgcaacaaaagttgtcacatatatagatgttcaaataacacaactcttttt 45640489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 50726207 - 50726136
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||| ||||| |||||||||| |||| ||||| || |||||||||||||| ||||||| |||||||||    
T  50726207 cctcattttctttgcaaaattttggttgtcacaaaaattatcacatatatggatgttcaaataacacaactc 50726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 3981984 - 3981914
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||| |||||||||||||||  |||| |||| |||||||||| ||||||| ||||||| |||||||||    
T  3981984 ctcattttctttgtaaaattttgattgtcacaaatgttgtcacatttatggatgttcaaataacacaactc 3981914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30735252 - 30735180
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| |||| ||||||||||  |||| ||||| || ||||||| |||||||||||||| ||||||||||    
T  30735252 cctcatttactttataaaattttgattgtcacaaaaattatcacatacatggatattcaaataacacaactct 30735180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 41677260 - 41677219
Alignment:
Q  36 agttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  41677260 agttgtcacatatatggatgttcaaataacacaactcttttt 41677219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46907307 - 46907380
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||  |||| |||||||||||  ||| |||||| ||||||| |||||||||||    
T  46907307 cctcattttctttataaaattttgattgtctcaaaagttgtcgtataaatggatgttcaaataacacaactctt 46907380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 50149060 - 50149133
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    |||||| |||||||||||||||  ||| ||||||||||||| ||| |  ||| ||||||| |||||||||||||    
T  50149060 tcattttctttgtaaaattttgattgttgcaaaagttgtcatataaaatgatgttcaaataacacaactctttt 50149133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 2571747 - 2571819
Alignment:
Q  1 cctcatttcctttgt-aaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||| |||||| |||||||||| |||| |||||||||||| ||  |||||| ||||||| |||||||||    
T  2571747 cctcattttctttgttaaaattttggttgtcacaaaagttgtcatatgcatggatgttcaaataacacaactc 2571819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 18434909 - 18434981
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||| ||||| |||||||||| |||| ||||||||||||  || || ||| ||||||| ||||||||||||    
T  18434909 tcattttctttgcaaaattttggttgtcacaaaagttgtcatctaaatagattttcaaataacacaactcttt 18434981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 45333823 - 45333891
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaa 69  Q
    |||||||||||||||||||||||   |||| ||||| || |||||||||| ||| ||||||| ||||||    
T  45333823 cctcatttcctttgtaaaattttaattgtcacaaaaattatcacatatatagatgttcaaataacacaa 45333891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 50333337 - 50333395
Alignment:
Q  18 aattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    |||||||| |||| |||||||||||||||||||||||  | |||| |||||| ||||||    
T  50333337 aattttggttgtcacaaaagttgtcacatatatggatggttaaataacacaattctttt 50333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8828080 - 8828035
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacat 46  Q
    ||||||||| ||| ||||||||||| |||||||||| |||||||||    
T  8828080 cctcatttcttttataaaattttggttgtcgcaaaaattgtcacat 8828035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 9566907 - 9566846
Alignment:
Q  13 tgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    ||||||||||||| |||| |||||||||||| |||  || || ||||||| |||||||||||    
T  9566907 tgtaaaattttggttgtctcaaaagttgtcatataattgaatgttcaaataacacaactctt 9566846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38956577 - 38956501
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  38956577 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcatttt 38956501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3937082 - 3937008
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||| ||||||| ||||||||||||    
T  3937082 cctcatttcctttataaaattttggttgtcacaaaagttgtcacatgtatggatgttcaaataacacaactcttt 3937008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44895531 - 44895460
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||| ||| |||||    
T  44895531 cctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatggatgttcaaataacataactc 44895460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25192876 - 25192802
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||| |||||||||||||| | |||| ||||||||||||||| |||| |||||||||| ||||||||||||    
T  25192876 cctcattttctttgtaaaattttagttgtcacaaaagttgtcacatgtatgaatattcaaataacacaactcttt 25192802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 22918128 - 22918057
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| |||||||  |||||| | |||||||    
T  22918128 cctcatttcctttgtaaaattttgattgtcgcaaaagttgtcacatgtatggatgctcaaataatacaactc 22918057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 41989689 - 41989618
Alignment:
Q  11 tttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttttataat 82  Q
    ||||||||||||||| |||| |||||||| |||||||||||||| ||||||| ||||||||| |||| ||||    
T  41989689 tttgtaaaattttggttgtcacaaaagttatcacatatatggatgttcaaataacacaactcattttttaat 41989618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32529815 - 32529745
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    ||||||||||||||||||||||||  |||| ||||| |||||||||||||||||  |||||| ||||||||    
T  32529815 cctcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatggatgctcaaataacacaact 32529745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43942744 - 43942818
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||| |||||||||||||||| || | ||||| || |||||||||||||| ||||||| ||||||||||||    
T  43942744 cctcattttctttgtaaaattttggttgccacaaaaattatcacatatatggatgttcaaataacacaactcttt 43942818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 46022226 - 46022153
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  46022226 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 46022153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24614275 - 24614203
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||||||||||||||  | || |||||||| ||||||||||| || ||||||| ||||||||||    
T  24614275 cctcatttcctttgtaaaattttgattatcacaaaagttatcacatatatgaatgttcaaataacacaactct 24614203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 43025453 - 43025524
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||||||||||||||||| | |||  ||||||||||||||||||| ||| ||| ||| ||||||||||    
T  43025453 ctcatttcctttgtaaaattttagttgttacaaaagttgtcacatatatagatgttcgaataacacaactct 43025524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7701656 - 7701729
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||| ||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  7701656 cctcattttctttataaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 7701729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 40112909 - 40112841
Alignment:
Q  5 atttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||||||||||  ||||  | ||||||| |||||||||||| ||||||| ||||||||||    
T  40112909 atttcctttgtaaaattttgattgtcagagaagttgttacatatatggatgttcaaataacacaactct 40112841  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 35098661 - 35098590
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||| || | ||||||||||| |||  |||||||||||| ||| |||||||||||||| ||||||||||    
T  35098661 ctcattttctatataaaattttggttgtttcaaaagttgtcatataaatggatattcaaataacacaactct 35098590  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 45851164 - 45851095
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||| | ||||  |||| |||| ||| |||||||| ||||||| |||||||||    
T  45851164 tcatttcctttgtaaaattttagttgtcaaaaaaattgtgacagatatggatgttcaaataacacaactc 45851095  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 3614396 - 3614333
Alignment:
Q  10 ctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||||||||||| |||  |||||||||||| ||| |||||| ||||||| ||| ||||||    
T  3614396 ctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacataactct 3614333  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 35072320 - 35072249
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||| |||| ||||||||||| |||  |||||||||||| ||| |||||| |||| || ||||||||||    
T  35072320 ctcattttctttataaaattttggttgtttcaaaagttgtcatataaatggatgttcagataacacaactct 35072249  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40417886 - 40417957
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||| || |||||||||||||||| |||| |||||||||||  ||| || ||| ||||||| |||||||||    
T  40417886 cctcactttctttgtaaaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacacaactc 40417957  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41189502 - 41189428
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcac--atatatggatattcaaattacacaactct 73  Q
    ||||||||||||||||||||||||  ||||  ||||||| ||||  ||||||| || ||||||| ||||||||||    
T  41189502 cctcatttcctttgtaaaattttgattgtcataaaagttatcacatatatatgaatgttcaaataacacaactct 41189428  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 33578274 - 33578200
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttt 76  Q
    ||||||| |||||||||||||| | ||| ||||| ||||||| ||| |  || |||||||| |||||||||||||    
T  33578274 ctcattttctttgtaaaattttagttgttgcaaaggttgtcatataaaatgacattcaaataacacaactctttt 33578200  T

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Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 552905 - 552976
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  552905 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 552976  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 15974722 - 15974794
Alignment:
Q  3 tcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||| ||||||||||||    
T  15974722 tcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatggatgttcaaataacacaactcttt 15974794  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32316887 - 32316815
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  32316887 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 32316815  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33430321 - 33430247
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||| || | ||||| ||||||||||||    
T  33430321 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgtccaaataacacaactcttt 33430247  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31077906 - 31077977
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||||| |||| |||||||||| |||||||||    
T  31077906 cctcacttcctttgtaaaattttggttgtcacaaaagttgtcacatgtatgaatattcaaataacacaactc 31077977  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26595461 - 26595543
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctttttataatt 83  Q
    |||||||| |||||||||||||||| |||  |||||||||||| ||| |||||| ||||||| |||||||||||| |||||||    
T  26595461 cctcattttctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaactctttatataatt 26595543  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13689953 - 13689882
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||| ||||||||| | ||||| |||| ||||||||||||||||| ||||||| |||||||||    
T  13689953 cctcatttcctttataaaattttagttgtcgtaaaaattgtcacatatatggatgttcaaataacacaactc 13689882  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18737526 - 18737460
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacac 67  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||| |||||| ||||||| ||||    
T  18737526 cctcattttctttgtaaaattttggttgtcacaaaagttgtcacatacatggatgttcaaataacac 18737460  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 16199562 - 16199635
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactctt 74  Q
    |||||||| |||| ||||||||||| |||| |||||||||||| ||| |||||| ||||||| |||||||||||    
T  16199562 cctcattttctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 16199635  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 34047508 - 34047573
Alignment:
Q  10 ctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||| ||||||| ||| ||||||||    
T  34047508 ctttgtaaaattttggttgtcacaaaagttgtcacatttatggatgttcaaataacaaaactcttt 34047573  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5694110 - 5694039
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    |||||||||||||||||||||| || |||| |||||||||||||||| ||| || || |||| |||||||||    
T  5694110 cctcatttcctttgtaaaatttaggttgtctcaaaagttgtcacatacatgaatgtttaaataacacaactc 5694039  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14818044 - 14818115
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||||  || ||||||| |||||||||    
T  14818044 cctcatttcctttctaaaattttggttgtcacaaaagttgtcatatatataaatgttcaaataacacaactc 14818115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 1156833 - 1156904
Alignment:
Q  2 ctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    ||||||||||||  |||||||||  |||| |||||||| ||| |||||||||| ||||||| ||||||||||    
T  1156833 ctcatttcctttacaaaattttgattgtcacaaaagttatcaaatatatggatgttcaaataacacaactct 1156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 11612300 - 11612370
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaact 71  Q
    |||||||| |||||||||||||||  | || ||||| || ||||||||||  |||||||||| ||||||||    
T  11612300 cctcattttctttgtaaaattttgattatcacaaaaattatcacatatataaatattcaaataacacaact 11612370  T

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Target: scaffold0056 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 76578 - 76504
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttt 75  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |||| ||||||||||||    
T  76578 cctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttaaaataacacaactcttt 76504  T

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Target: scaffold0199 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8780 - 8856
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactcttttt 77  Q
    ||||||||||||||||||||||||| ||||  ||||||||||| |||||||||| ||||||| ||||||||||||||    
T  8780 cctcatttcctttgtaaaattttggttgtcataaaagttgtcagatatatggatgttcaaataacacaactcttttt 8856  T

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Target: scaffold0098 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 49407 - 49478
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||| ||| |||||    
T  49407 cctcatttcctttgtaaaattttggttatcacaaaagttgtcacatatatggatgttcaaataacataactc 49478  T

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Target: scaffold0519 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 11894 - 11966
Alignment:
Q  1 cctcatttcctttgtaaaattttggctgtcgcaaaagttgtcacatatatggatattcaaattacacaactct 73  Q
    |||||||| ||||||||||||||||  ||| |||||||||||| || ||| ||| ||||||| | ||||||||    
T  11894 cctcattttctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttcaaataatacaactct 11966  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 35660 - 35694
Alignment:
Q  38 ttgtcacatatatggatattcaaattacacaactc 72  Q
    ||||||||||||||||||||||||| |||||||||    
T  35660 ttgtcacatatatggatattcaaataacacaactc 35694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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