View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_low_30 (Length: 391)
Name: NF8961_low_30
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 48084436 - 48084561
Alignment:
| Q |
1 |
ttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccga |
100 |
Q |
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| T |
48084436 |
ttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccga |
48084535 |
T |
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| Q |
101 |
gtaccgtaaagttctcagggtattat |
126 |
Q |
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| T |
48084536 |
gtaccgcaaagttctcagggtattat |
48084561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 48084601 - 48084666
Alignment:
| Q |
140 |
ccaattgccaaaagtgttaaaggatatttaataattaatatgaacatggttgcatgtttaacaatg |
205 |
Q |
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| T |
48084601 |
ccaattgacaaaagtgttaaaggatatttaataattaatatgaacatggttgcatgtttaacaatg |
48084666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 48084749 - 48084805
Alignment:
| Q |
319 |
ttaataaagtctggtgaatgttactctaccatatgcagaggctttatgatttgggag |
375 |
Q |
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| T |
48084749 |
ttaataaagtctggtcaatgttactctaccatatgcagaggctttatgatttgggag |
48084805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 48084686 - 48084728
Alignment:
| Q |
236 |
gtgtgtcactttcaaacatgtctagtattatctagctatcatt |
278 |
Q |
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| T |
48084686 |
gtgtgtcactttcaaacatgtctagtattatctatctatcatt |
48084728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 48075013 - 48075125
Alignment:
| Q |
3 |
ggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccgagt |
102 |
Q |
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| T |
48075013 |
ggtggaaatgattttgtgaacaactattttcttgtacctttttctgcaagatcacgccaatttagacttccagattatgttgtgtacctcatttctgagt |
48075112 |
T |
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| Q |
103 |
accgtaaagttct |
115 |
Q |
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| T |
48075113 |
atcgtaaaattct |
48075125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35377155 - 35377077
Alignment:
| Q |
1 |
ttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccagatta |
79 |
Q |
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| T |
35377155 |
ttggaggcaacgattttgtcaacaattattatttggtcccattttcagcaagatctcgccaattttctcttccagatta |
35377077 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35358508 - 35358405
Alignment:
| Q |
1 |
ttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccagattatgtccgttatctcatttccga |
100 |
Q |
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|||| ||||| ||||||||||| || ||||||||||| || |||||||| |||||||| ||||||||||| ||| | |||||| |||||||| || || |
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| T |
35358508 |
ttggaggcaacgattttgtcaataattattatttggtcccattttcagctagatctcgccaattttctcttccaaactatgtcacctatctcatatctga |
35358409 |
T |
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| Q |
101 |
gtac |
104 |
Q |
| |
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|||| |
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| T |
35358408 |
gtac |
35358405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 35370681 - 35370606
Alignment:
| Q |
1 |
ttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccaga |
76 |
Q |
| |
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|||| ||||| |||||||| ||||| ||||||| || || ||||||||||||||||| ||||||||||| ||||| |
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| T |
35370681 |
ttggaggcaacgattttgttaacaattattattgggccccattttcagcaagatctcgccaattttctcttccaga |
35370606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 6341754 - 6341675
Alignment:
| Q |
3 |
ggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaattttctctcccagattatgt |
82 |
Q |
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| T |
6341754 |
ggtgggaatgattttgtgaacaactattatttggttccttactcagccagatctcgtgaatatgctcttcctgattatgt |
6341675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 7386944 - 7386882
Alignment:
| Q |
1 |
ttggtggcaatgattttgtcaacaactattatttggttcctttttcagcaagatctcgtcaat |
63 |
Q |
| |
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||||||||||||||||||| || ||||| || ||||| |||| ||| ||||| |||||||||| |
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| T |
7386944 |
ttggtggcaatgattttgtgaataactactacttggtgccttattctgcaaggtctcgtcaat |
7386882 |
T |
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