View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8961_low_31 (Length: 381)
Name: NF8961_low_31
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 4 - 363
Target Start/End: Original strand, 43475178 - 43475537
Alignment:
| Q |
4 |
gactttactgtgaaattattttgtgtggaaggcgtgtgttgccattttgattgaatgatcttgtaaaaattcttctttgtaaagaggtatgatgcatggt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43475178 |
gactttactgtgaaattattttgtgtggaaggcgtgtgttgccattttgattgaatgatcttgtaaaaattcttctttgtaaagaggtatgatgcatggt |
43475277 |
T |
|
| Q |
104 |
tttataaaacaaagtactcataaattgacatttttgggggaagccatagcatttattttgtctaagcccctcaaacagaactaatgtagtgctatgttca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43475278 |
tttataaaacaaagtactcataaattgacatttttgggggaagccatagcatttattttgtctaagcccctcaaacagaactaatgtagtgctatgttca |
43475377 |
T |
|
| Q |
204 |
tatagcacgtatatgaggttttgggaaatgttttgttgtccatgttacaattgcctgatatatacattgagtcacttgacctatcaaaggcnnnnnnngg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43475378 |
tatagcacgtatatgaggttttgggaaatgttttgttgtccatgttacaattgcctgatatatacattgagtcacttgacctatcaaaggcttttcttgg |
43475477 |
T |
|
| Q |
304 |
cagttaagtaataggatttaatttggtggcgtgatccggagttgattgtcactgcacatc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43475478 |
cagttaagtaataggatttaatttggtggcgtgatccggagttgattgtcactgcacatc |
43475537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 43565119 - 43564764
Alignment:
| Q |
1 |
tatgactttactgtgaaattattttgtgtggaaggcgtgtgttgccattttgattgaatgatcttgtaaaaattcttctttgtaaagaggtatgatgcat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43565119 |
tatgactttactttgaaattattttgtgtggaaggcgtgtgttgctattttgattgaatgatcttgtaaaagttcttctttgtaaagaggtatgatgcat |
43565020 |
T |
|
| Q |
101 |
ggttttataaaacaaagtactcataaattgacatttttgggggaagccatagcatttattttgtctaagcccctcaaacagaactaatgtagtgctatgt |
200 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| ||||||||||| | |||||||||| | ||||||||| |||||| |||||||||| |
|
|
| T |
43565019 |
tgttttataaaa-taagtactagtaaattgacattttt-ggggaagccat----ctctgtttgtctaaggcagtcaaacagatctaatgcagtgctatgt |
43564926 |
T |
|
| Q |
201 |
tcatatagcacgtatatgaggttttgggaaatgttttgttgtccatgttacaattgcctgatatatacattgagtcacttgacctatcaaaggcnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
43564925 |
tcatatagcacgtatatgaggttttaggaaatgttttgttgtccatattataattgcctgatatttaca-tgagtcactcgacctatcaaaggcttcttt |
43564827 |
T |
|
| Q |
301 |
nggcagttaagtaataggatttaatttggtggcgtgatccggagttgattgtcactgcacatc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43564826 |
tagcagttaagtaataggatttaatttggtggcgtgatctggagttgattgtcactgcacatc |
43564764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University