View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8961_low_33 (Length: 372)
Name: NF8961_low_33
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 208 - 359
Target Start/End: Original strand, 43317994 - 43318145
Alignment:
| Q |
208 |
taatacttgtaaggcgtgtgagtagtatttttcatggtgttggtagcaatacttaatttgttggggtgttggtattgaattgcgtgggtgcatatagtaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43317994 |
taatacttgtaaggcgtgtgagtagtatttttcatggtgttggtagcaatacttaatttgttggggtgttggtattgaattgcgtgggtgcatatagtaa |
43318093 |
T |
|
| Q |
308 |
taccgaatgttcagctcgcccattcttcactgtattctattctatcgatcct |
359 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43318094 |
taccgaatgttcagctcgcgcattcttcactgtattctattctatcgatcct |
43318145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 43317759 - 43317919
Alignment:
| Q |
18 |
acttatagtctaaaaaataagtttcaaaatgttctaaatacctaccaaaattgtccgagttgcttgctcagtcataagagtttacatctaatcacttcca |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43317759 |
acttatagtctataaaataagtttcaaaatgttctaaatacctaccaaaattgtccgagttgcttgctcagtcataagagtttatatctaatcacttcca |
43317858 |
T |
|
| Q |
118 |
cttatcactttgtcaatgatgtttacaatattgtcaatgtcatatttgatgttctgaaata |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
43317859 |
cttatcactttgtcaatgatgtttacaatattgtcaatgtcatattcgacgttctgaaata |
43317919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University