View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_low_39 (Length: 316)

Name: NF8961_low_39
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_low_39
NF8961_low_39
[»] chr7 (6 HSPs)
chr7 (85-304)||(47543398-47543617)
chr7 (85-202)||(4609652-4609769)
chr7 (85-240)||(10315043-10315198)
chr7 (85-240)||(31030341-31030496)
chr7 (93-211)||(17116404-17116522)
chr7 (112-209)||(38153904-38154001)
[»] chr1 (17 HSPs)
chr1 (88-304)||(32160044-32160259)
chr1 (83-249)||(15259370-15259536)
chr1 (130-231)||(26260768-26260869)
chr1 (112-216)||(27568382-27568486)
chr1 (112-242)||(27363725-27363855)
chr1 (115-224)||(44675097-44675206)
chr1 (264-304)||(1951913-1951953)
chr1 (88-182)||(38133069-38133163)
chr1 (147-189)||(9484879-9484921)
chr1 (107-211)||(12688172-12688276)
chr1 (121-189)||(25392345-25392413)
chr1 (115-205)||(4889452-4889542)
chr1 (125-199)||(27264588-27264662)
chr1 (112-205)||(6723718-6723811)
chr1 (112-165)||(10686232-10686285)
chr1 (106-211)||(48973644-48973749)
chr1 (172-236)||(36098596-36098660)
[»] chr6 (10 HSPs)
chr6 (85-304)||(32196725-32196944)
chr6 (85-244)||(7824105-7824264)
chr6 (88-210)||(11324442-11324564)
chr6 (82-215)||(17292763-17292896)
chr6 (112-231)||(18673363-18673482)
chr6 (127-185)||(9200938-9200996)
chr6 (112-231)||(5667346-5667465)
chr6 (93-211)||(34714895-34715013)
chr6 (112-205)||(2682761-2682854)
chr6 (116-189)||(7155422-7155495)
[»] chr3 (10 HSPs)
chr3 (85-304)||(4740971-4741187)
chr3 (113-210)||(14788867-14788964)
chr3 (85-249)||(13043321-13043485)
chr3 (85-249)||(13051398-13051562)
chr3 (112-224)||(20017410-20017522)
chr3 (115-231)||(47160990-47161106)
chr3 (112-224)||(6894192-6894304)
chr3 (112-205)||(25845647-25845740)
chr3 (151-184)||(33388601-33388634)
chr3 (159-211)||(6925997-6926049)
[»] chr5 (13 HSPs)
chr5 (147-304)||(16610602-16610759)
chr5 (85-304)||(31706337-31706552)
chr5 (117-244)||(29651767-29651894)
chr5 (85-237)||(704490-704642)
chr5 (85-185)||(30722538-30722638)
chr5 (85-237)||(27482646-27482798)
chr5 (140-230)||(29994645-29994735)
chr5 (112-156)||(22922506-22922550)
chr5 (124-230)||(18967864-18967970)
chr5 (112-161)||(22924159-22924208)
chr5 (112-236)||(19314979-19315103)
chr5 (159-211)||(21041995-21042047)
chr5 (124-156)||(22923149-22923181)
[»] chr2 (14 HSPs)
chr2 (151-304)||(8090506-8090659)
chr2 (85-249)||(40638766-40638930)
chr2 (115-230)||(31640241-31640356)
chr2 (85-249)||(20948080-20948244)
chr2 (112-209)||(27708189-27708286)
chr2 (112-210)||(44735977-44736075)
chr2 (115-211)||(27009200-27009296)
chr2 (1-41)||(43451290-43451330)
chr2 (169-242)||(9420722-9420795)
chr2 (118-231)||(45131107-45131220)
chr2 (115-202)||(9840768-9840855)
chr2 (116-218)||(33645830-33645932)
chr2 (124-189)||(21563423-21563488)
chr2 (115-236)||(30505717-30505838)
[»] chr4 (10 HSPs)
chr4 (94-230)||(52577965-52578101)
chr4 (106-205)||(9831377-9831476)
chr4 (85-205)||(30972395-30972515)
chr4 (112-211)||(22653286-22653385)
chr4 (112-205)||(11131194-11131287)
chr4 (159-231)||(19846574-19846646)
chr4 (121-205)||(43001717-43001801)
chr4 (112-202)||(8830949-8831039)
chr4 (115-212)||(25130441-25130538)
chr4 (121-189)||(48336968-48337036)
[»] chr8 (7 HSPs)
chr8 (112-211)||(8462514-8462613)
chr8 (124-189)||(5751992-5752057)
chr8 (121-211)||(33282823-33282913)
chr8 (83-181)||(39435484-39435582)
chr8 (112-205)||(37929106-37929199)
chr8 (145-205)||(33191210-33191270)
chr8 (171-231)||(38738483-38738543)
[»] scaffold0236 (1 HSPs)
scaffold0236 (228-304)||(19937-20009)
[»] scaffold0204 (1 HSPs)
scaffold0204 (121-189)||(24490-24558)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 85 - 304
Target Start/End: Original strand, 47543398 - 47543617
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  47543398 tttaatgtcaaagattgttcggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaatt 47543497  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 284  Q
    |||||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  47543498 atcatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 47543597  T
Q  285 tgttcttgactctgatgtcc 304  Q
    ||||||||||||||||||||    
T  47543598 tgttcttgactctgatgtcc 47543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 4609769 - 4609652
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||| ||||||| ||| | ||||  |||||||||||||||||||| | |||||||| ||||||||||||| |||||| | ||||||||||| ||||||    
T  4609769 tttaatatcaaagaatgctctgttaatcaggtggtcgataagattaaattgcttgcttatacgtggttgaaggcgaagtatatttctcttcccctcaatt 4609670  T
Q  185 atcatcagtggtggctta 202  Q
    | |||  |||||||||||    
T  4609669 accatgggtggtggctta 4609652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 10315043 - 10315198
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| ||||| |||||||||  ||||| |   ||||||||| ||||||    
T  10315043 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacatggttgaaggtgaagtattcctctcttcccctcaatt 10315142  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 240  Q
    | ||   |||||||||||| | |||||  ||||| ||||| ||||||| |||||||    
T  10315143 accacgggtggtggcttagcccgtttactattttgggcataggctaagtgtttctt 10315198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 31030496 - 31030341
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| |||||||||||||||  ||||| |   ||||||||| ||||||    
T  31030496 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacgtggttgaaggtgaagtattcctctcttcccctcaatt 31030397  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 240  Q
    | ||   |||||||||||  | |||||  ||||| ||||| ||||||| |||||||    
T  31030396 accacgggtggtggcttaacccgtttactattttgggcataggctaagtgtttctt 31030341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 17116522 - 17116404
Alignment:
Q  93 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 192  Q
    |||||||||| |||| || || ||||| |||||||||||||| || || |||| |||||||||| |||| | || |||||||||||||| |||||||       
T  17116522 caaagattgctcggtaatacaagtggttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggt 17116423  T
Q  193 tggtggcttagtctgttta 211  Q
    |||||||||||||||||||    
T  17116422 tggtggcttagtctgttta 17116404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 38153904 - 38154001
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 209  Q
    ||||||||||||| ||||||||| || ||||||| ||||||||||  ||| |||  | |||||||||| || || |||   |||||||||||||||||    
T  38153904 caggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtctgtt 38154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 88 - 304
Target Start/End: Original strand, 32160044 - 32160259
Alignment:
Q  88 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 187  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |    
T  32160044 aatgtcaaagattgctcggttatccaggtgatcgataagattaagtcgcttgcttttacgtggttgaggacgaagtttatttctctttccttcaattacc 32160143  T
Q  188 atcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatattgt 287  Q
    ||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||    
T  32160144 attggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctg-tttttgtttatgatctcttaggtaacttttgtatatattgt 32160242  T
Q  288 tcttgactctgatgtcc 304  Q
    |||||||||||||||||    
T  32160243 tcttgactctgatgtcc 32160259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 15259370 - 15259536
Alignment:
Q  83 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 182  Q
    |||||||||||||| | ||  ||||||  ||||||||||| |||||||| |||||||||||||||||||||||| |||||| | ||||||||||| ||||    
T  15259370 tatttaatgtcaaataatgttcggttaatcaggtggtcgacaagattaaatcgcttgcttttacgtggttgaaggcgaagtatatttctcttcccctcaa 15259469  T
Q  183 ttatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 249  Q
    ||| |||  ||||| |||||||| ||||| |||  | ||||| ||||||||||||||||||||||||    
T  15259470 ttaccatgggtggtagcttagtccgtttaccatactgggcataggctaagagtttcttttctgtttt 15259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 26260768 - 26260869
Alignment:
Q  130 aagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggct 229  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||  |||| ||| || ||||||||||    
T  26260768 aagtctcttgcttttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggct 26260867  T
Q  230 aa 231  Q
    ||    
T  26260868 aa 26260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 27568382 - 27568486
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    |||||||| || | ||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||| |||  |||||||||||||||||||     
T  27568382 caggtggtagaaacgattaagtctcttgcttttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtctgtttg 27568481  T
Q  212 tcatt 216  Q
    |||||    
T  27568482 tcatt 27568486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 27363855 - 27363725
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    ||||||| || ||||||| |||  || ||||||||||| |||||    
T  27363855 caggtggtcgataagattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctctttccctcaattaccatgggttgtggcttagtccgttta 27363756  T
Q  212 tcattttaggcattggctaagagtttctttt 242  Q
     |||||| ||||| |||||||  ||||||||    
T  27363755 ccattttgggcataggctaaggttttctttt 27363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 44675097 - 44675206
Alignment:
Q  115 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 214  Q
    ||||| |||||||||||| | ||||| || | |||||||||| |||| |||| ||| ||||||||||||||||||   ||||||||||||| ||||||||    
T  44675097 gtggttgataagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatca 44675196  T
Q  215 ttttaggcat 224  Q
    | || |||||    
T  44675197 tgttgggcat 44675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 1951953 - 1951913
Alignment:
Q  264 ttaggcaacttttgtatatattgttcttgactctgatgtcc 304  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1951953 ttaggcaacttttgtatatattgttcttgactctgatgtcc 1951913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 38133163 - 38133069
Alignment:
Q  88 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 182  Q
    |||| ||||| |||| ||||||| |||||| | ||||| ||||||||  |||||| ||||||||||||| |||  ||||||| ||||||||||||    
T  38133163 aatgacaaagtttgctcggttattcaggtgatagataacattaagtcttttgcttatacgtggttgaaggcgagatttgtttttcttcccttcaa 38133069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 9484879 - 9484921
Alignment:
Q  147 gtggttgaagacgaagtttgtttctcttcccttcaattatcat 189  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcat 9484921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 12688172 - 12688276
Alignment:
Q  107 ttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtct 206  Q
    |||| |||||||| ||||||||||||| |||  |||||| ||||||||||  |||||||    |||||||||| || ||||||   |||||||||||||     
T  12688172 ttatgcaggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtcc 12688271  T
Q  207 gttta 211  Q
    |||||    
T  12688272 gttta 12688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 25392413 - 25392345
Alignment:
Q  121 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 189  Q
    ||||||||||||||||| || | || |||||||||| ||||||||  || | |||||||||||||||||    
T  25392413 gataagattaagtcgctcgcatgtatgtggttgaaggcgaagttttcttattttcccttcaattatcat 25392345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 4889452 - 4889542
Alignment:
Q  115 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    ||||| ||||| |||||||||||||| || | |||||| ||| |||||||   |||||||||||| || ||||||  |||||| |||||||    
T  4889452 gtggttgataaaattaagtcgcttgcattcatgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgacttagtc 4889542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 27264588 - 27264662
Alignment:
Q  125 agattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggc 199  Q
    |||||||||||||||| ||| ||||||||||| ||||||    |||||||||| ||||||| |||  ||||||||    
T  27264588 agattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctcttcccctcaattaccatgggtggtggc 27264662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 6723811 - 6723718
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    ||||||||||| ||||||||||| ||  |||||| ||||||||||  |||||||  | ||| ||| ||||||| ||||   |||||||||||||    
T  6723811 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtc 6723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 10686285 - 10686232
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagttt 165  Q
    |||||||| |||||||||||||| ||| | ||| ||||||||||| ||||||||    
T  10686285 caggtggtggataagattaagtcccttacatttgcgtggttgaaggcgaagttt 10686232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 48973644 - 48973749
Alignment:
Q  106 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    ||||| |||||||| || || ||||||| | |  |||| | |||||| |||  |||||||||  |||||||||| |||||||||  ||||||||||||||    
T  48973644 gttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtc 48973743  T
Q  206 tgttta 211  Q
     |||||    
T  48973744 cgttta 48973749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 36098660 - 36098596
Alignment:
Q  172 cttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtt 236  Q
    ||||||||||||||||||   ||||||||||||| ||| | ||| || ||||| |||||||||||    
T  36098660 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagtt 36098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 85 - 304
Target Start/End: Complemental strand, 32196944 - 32196725
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||||||  |||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||||    
T  32196944 tttaatgtcaaagattgttcggttatccaggtggtcgaccagattaagtcgcttacttttacatggttgaagacgaagtttagttctcttcccttcaatt 32196845  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 284  Q
    | |||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  32196844 aacatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 32196745  T
Q  285 tgttcttgactctgatgtcc 304  Q
    ||||||||||||||||||||    
T  32196744 tgttcttgactctgatgtcc 32196725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 7824264 - 7824105
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||| ||| ||||||  ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  7824264 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaagattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 7824165  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttct 244  Q
    | |||  |||||||||||| | ||| | |||||| ||||| ||||||| |||||||||||    
T  7824164 accatgggtggtggcttagcccgttcaccattttgggcataggctaagtgtttcttttct 7824105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 11324442 - 11324564
Alignment:
Q  88 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 187  Q
    |||| ||||| |||| ||||| | ||| |||| || |||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  11324442 aatgacaaagtttgctcggttcttcagatggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatc 11324541  T
Q  188 atcagtggtggcttagtctgttt 210  Q
    ||  |||||||||||||| ||||    
T  11324542 atgggtggtggcttagtccgttt 11324564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 17292896 - 17292763
Alignment:
Q  82 gtatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 181  Q
    |||||||||| |||||| ||  || |||| |||||||||  |||||||||||| || || || | |||||||||  | || |||| ||||||||||||||    
T  17292896 gtatttaatggcaaagaatgatcgattatgcaggtggtcattaagattaagtctctagcattcatgtggttgaacgccaaatttgcttctcttcccttca 17292797  T
Q  182 attatcatcagtggtggcttagtctgtttatcat 215  Q
    ||||||||   || |||||||||| |||||||||    
T  17292796 attatcatggttgatggcttagtccgtttatcat 17292763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 18673363 - 18673482
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    |||||||| ||||| |||||||| ||| |||||| ||||||||||  ||| | |||   ||||||| |||||||||||   ||||||||||| | |||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgttta 18673462  T
Q  212 tcattttaggcattggctaa 231  Q
      ||||||||||||||||||    
T  18673463 ctattttaggcattggctaa 18673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 9200996 - 9200938
Alignment:
Q  127 attaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatta 185  Q
    ||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||    
T  9200996 attaagtcgcttgcttttacgtggtagaaggcgaagtatatttctcttcccctcaatta 9200938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 231
Target Start/End: Complemental strand, 5667465 - 5667346
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||||||| |||| |  ||||| ||||||||||||||   |||||| |||||| |||||    
T  5667465 caggtggtcgataggattaagttactgactttcaaatggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgttta 5667366  T
Q  212 tcattttaggcattggctaa 231  Q
      ||||||||||| ||||||    
T  5667365 ctattttaggcataggctaa 5667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 34714895 - 34715013
Alignment:
Q  93 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 192  Q
    |||||| ||| |||| || || ||||| |||||||||||||| ||  |||||| |||||||||  | || |||  |||||||||| ||||||| |||       
T  34714895 caaagaatgctcggtaatacacgtggttgataagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggt 34714994  T
Q  193 tggtggcttagtctgttta 211  Q
    |||||||||||||||||||    
T  34714995 tggtggcttagtctgttta 34715013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 2682761 - 2682854
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||||  ||| |||  | || ||| |||||||| ||||   |||||||||||||    
T  2682761 caggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtc 2682854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 7155422 - 7155495
Alignment:
Q  116 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 189  Q
    |||| |||||||||||||  ||| |||||||||||||||||   || |||  |||||| |||||||||||||||    
T  7155422 tggttgataagattaagtttcttacttttacgtggttgaaggaaaaattttcttctctacccttcaattatcat 7155495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 85 - 304
Target Start/End: Original strand, 4740971 - 4741187
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4740971 tttaatgtcaaagattgctcggttatctaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtatatttctcttcccttcaatt 4741070  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 283  Q
    | |||  ||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    ||| || ||| |||||||| |||||||||    
T  4741071 accatgggtgatggcttagtccgtttaccattttaggcataggctaagagtttcttttctgtttttt----atgctctgttcaggcaactattgtatata 4741166  T
Q  284 ttgttcttgactctgatgtcc 304  Q
    |||||||||||||||||||||    
T  4741167 ttgttcttgactctgatgtcc 4741187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 14788867 - 14788964
Alignment:
Q  113 aggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 210  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  14788867 aggtggtagataagattaagtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtcagttt 14788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 13043321 - 13043485
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13043321 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13043420  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 249  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| ||||    
T  13043421 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctatttt 13043485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 13051398 - 13051562
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13051398 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13051497  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 249  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| ||||    
T  13051498 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctatttt 13051562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 20017522 - 20017410
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    |||||||| || ||||||||||| ||||||| |||||||||||||| ||| |||||||| |||||||| || || |||   ||||||||| ||| ||| |    
T  20017522 caggtggtagaaaagattaagtctcttgcttatacgtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttca 20017423  T
Q  212 tcattttaggcat 224  Q
     |||||| |||||    
T  20017422 ccattttgggcat 20017410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 47160990 - 47161106
Alignment:
Q  115 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 214  Q
    ||||| |||| |||||||| | |  |||||| ||||||||||  |||||||  ||||||||| |||||||| |||   ||||||||||| | ||||||      
T  47160990 gtggtggataggattaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttagaccgtttattg 47161089  T
Q  215 ttttaggcattggctaa 231  Q
    |||||||||||||||||    
T  47161090 ttttaggcattggctaa 47161106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 6894192 - 6894304
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||| ||| |||| |  ||||||||||||||||||||   |||||| |||||| |||||    
T  6894192 caggtggtcgataggattaagttactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgttta 6894291  T
Q  212 tcattttaggcat 224  Q
      |||||||||||    
T  6894292 ctattttaggcat 6894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 25845647 - 25845740
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    |||||||| ||||| |||||||||||  |||| | |||||||||| ||||||||  |||||| ||||| || || |||   |||||||||||||    
T  25845647 caggtggttgataaaattaagtcgctctctttcatgtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtc 25845740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 33388634 - 33388601
Alignment:
Q  151 ttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||||| |||||||||||||||||    
T  33388634 ttgaagacgaagtttgcttctcttcccttcaatt 33388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 6925997 - 6926049
Alignment:
Q  159 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||| |||||    
T  6925997 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttta 6926049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 147 - 304
Target Start/End: Original strand, 16610602 - 16610759
Alignment:
Q  147 gtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagtttcttttctgt 16610701  T
Q  247 tttttgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcc 304  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16610702 tttttgtttatgatctgttaggcaacttttgtatatattgttcttgactctgatgtcc 16610759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 304
Target Start/End: Complemental strand, 31706552 - 31706337
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| | ||||||||||| ||||||    
T  31706552 tttaatgtcaaagattgtttggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaatt 31706453  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 283  Q
    | |||  |||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||     |||||| |  ||| |||||||| ||||| |||    
T  31706452 accatgggtggtggcttagtccgtttaccatattgggcataggctaagagtttcttttctgtt-----tttatgctttgttcaggcaactattgtaaata 31706358  T
Q  284 ttgttcttgactctgatgtcc 304  Q
    |||||||||||||||||||||    
T  31706357 ttgttcttgactctgatgtcc 31706337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 29651894 - 29651767
Alignment:
Q  117 ggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcatt 216  Q
    |||||| |||||||||| |||||||||| ||||||||||  ||||||   ||||||||| | |||||||||||  |||||||||||||| ||||| |||     
T  29651894 ggtcgacaagattaagttgcttgctttttcgtggttgaatgcgaagtacttttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatg 29651795  T
Q  217 ttaggcattggctaagagtttcttttct 244  Q
    || ||||| |||||||  ||||||||||    
T  29651794 ttgggcataggctaaggttttcttttct 29651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 704642 - 704490
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    ||||| || ||||||||  ||||||| | |||| | |||||||||||||  ||| ||||| | ||||||||| | ||||||| || |||||| |||||||    
T  704642 tttaacgttaaagattgttcggttattcgggtgatagataagattaagtttcttacttttgcttggttgaaggcaaagtttgcttttcttccattcaatt 704543  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 237  Q
    |||||  |||||| ||||||| ||||| |||  | |||||||||||| |||||    
T  704542 atcatgggtggtgacttagtccgtttaccatactgggcattggctaaaagttt 704490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 30722638 - 30722538
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||| ||| ||||||  |||||||| || || |||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  30722638 tttaatgtcaaagaatgctcggttaatcaggtggtagacaatattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 30722539  T
Q  185 a 185  Q
    |    
T  30722538 a 30722538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 237
Target Start/End: Complemental strand, 27482798 - 27482646
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||  ||||| ||| |||| || |||||||| |||||||||||||| || || |||  ||||||||||  ||| |  ||| | |||||||||||||    
T  27482798 tttaatgataaagaatgctcggtaattcaggtggttgataagattaagtccctcgccttttggtggttgaaggtgaaatacgttacacttcccttcaatt 27482699  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 237  Q
    |||||   ||||||||||||| ||| | ||| || ||||| ||||||||||||    
T  27482698 atcatggctggtggcttagtccgttcaccatgttgggcataggctaagagttt 27482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 29994645 - 29994735
Alignment:
Q  140 cttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggcta 230  Q
    |||||| ||||||||||  |||||||  || |||||||||||||||||||   |||||||||| || |||||   ||||||||||||||||    
T  29994645 cttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttactgttttaggcattggcta 29994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 22922550 - 22922506
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaag 156  Q
    |||||||| || ||||||||||| |||||||||||||||||||||    
T  22922550 caggtggtagagaagattaagtctcttgcttttacgtggttgaag 22922506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 18967864 - 18967970
Alignment:
Q  124 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggca 223  Q
    ||||||||||| ||| |||||| |||||||||| |||| |||| ||||||||| || ||| |||||   || ||||||||||  ||||| ||  | ||||    
T  18967864 aagattaagtcactttcttttatgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccatttattatgctgggca 18967963  T
Q  224 ttggcta 230  Q
    |||||||    
T  18967964 ttggcta 18967970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 22924208 - 22924159
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaa 161  Q
    |||||||| || ||||||||||| |||| |||||||||||||||| ||||    
T  22924208 caggtggtagagaagattaagtctcttggttttacgtggttgaaggcgaa 22924159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 19315103 - 19314979
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    |||||||| |||||||||||||| ||  | |||| |||||||||| |||| |||| ||   ||||||  |||||||||   ||||||||||| | |||||    
T  19315103 caggtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgttta 19315004  T
Q  212 tcattttaggcattggctaagagtt 236  Q
     |||  ||||||| |||||| ||||    
T  19315003 ccatgctaggcataggctaatagtt 19314979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 21041995 - 21042047
Alignment:
Q  159 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||| |||||    
T  21041995 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttta 21042047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 22923181 - 22923149
Alignment:
Q  124 aagattaagtcgcttgcttttacgtggttgaag 156  Q
    ||||||||||| |||||||||||||||||||||    
T  22923181 aagattaagtctcttgcttttacgtggttgaag 22923149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 151 - 304
Target Start/End: Original strand, 8090506 - 8090659
Alignment:
Q  151 ttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttt 250  Q
    ||||||||| ||||| |||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  8090506 ttgaagacggagtttatttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgttttt 8090605  T
Q  251 tgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcc 304  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  8090606 tgtttatgatctgttaggcaacttttgtatatattgttcttaactctgatgtcc 8090659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 249
Target Start/End: Complemental strand, 40638930 - 40638766
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    |||||||||||||| ||| | ||||  ||||||||||| |||||||| |||||| | ||||||||||||| |  ||||| || |||||||||||||||||    
T  40638930 tttaatgtcaaagagtgctcagttaatcaggtggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaatt 40638831  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 249  Q
    | |||  |||||||||||||| |||||  ||||| | ||| |||||| |||||||||| ||||||    
T  40638830 accatgggtggtggcttagtccgtttacgattttggacataggctaaaagtttcttttatgtttt 40638766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 230
Target Start/End: Original strand, 31640241 - 31640356
Alignment:
Q  115 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 214  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||   ||||||||||||| |||||  |    
T  31640241 gtggtagataagattaagtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttacaa 31640340  T
Q  215 ttttaggcattggcta 230  Q
    || ||||||| |||||    
T  31640341 ttataggcataggcta 31640356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 20948080 - 20948244
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    ||||||| |||||| ||| |||||   ||||||||| | ||||||||||||||||| ||| ||||||||||| |||||| |  |||||||| | ||||||    
T  20948080 tttaatgccaaagactgctcggtttctcaggtggtcaacaagattaagtcgcttgccttttcgtggttgaaggcgaagtattcttctcttcgcctcaatt 20948179  T
Q  185 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 249  Q
    | |||  |||||||||||||| ||||| ||| || ||  | |||||||  |||||||||| ||||    
T  20948180 accatgggtggtggcttagtccgtttaccatgttgggtgtaggctaaggttttcttttctttttt 20948244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 27708286 - 27708189
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 209  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||| |||| |||| | ||||||||||||||  ||||   |||||||||| ||||||    
T  27708286 caggtggttgataagattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttcatggttggtggcttaatctgtt 27708189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 44736075 - 44735977
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 210  Q
    ||||||||||| ||||||||||| ||  |||||| |||||||||| ||||||||  | ||||||||||||||| ||||   | ||||||||||||||||    
T  44736075 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtctgttt 44735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 27009200 - 27009296
Alignment:
Q  115 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    ||||| |||||||||||||| || ||||||| ||| |||||| |||| |||  |||||||||||||||||| |||   ||||||||||||| |||||    
T  27009200 gtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgttta 27009296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43451290 - 43451330
Alignment:
Q  1 acaagtgcgtaccacacgcttccactaattcaaatgcacac 41  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  43451290 acaagtgcgcaccacacgcttccactaattcaaatgcacac 43451330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 9420795 - 9420722
Alignment:
Q  169 tctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctttt 242  Q
    ||||||||| |||||||||||  |||||||||||| | |||||  ||||||||||| |||||||  ||||||||    
T  9420795 tctcttcccctcaattatcatgggtggtggcttagcccgtttactattttaggcataggctaaggttttctttt 9420722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 45131220 - 45131107
Alignment:
Q  118 gtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattt 217  Q
    ||||| ||||||| |||||   |||| | ||||||||||  ||| | || ||||||||||||||||||||||  ||||||||||||||  |||| |||      
T  45131220 gtcgacaagattatgtcgcaaactttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgc 45131121  T
Q  218 taggcattggctaa 231  Q
    | ||||||||||||    
T  45131120 tgggcattggctaa 45131107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 9840768 - 9840855
Alignment:
Q  115 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 202  Q
    ||||| ||||||||||| ||||| ||||||| ||| |||||| | || |||| | ||||||| ||||||||||||   ||||||||||    
T  9840768 gtggttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggctta 9840855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 218
Target Start/End: Complemental strand, 33645932 - 33645830
Alignment:
Q  116 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcat 215  Q
    |||| ||||||||||||||||| || |||| ||||||||||   || |||| | ||||||| |||||||| |||   |||||| |||||||||| | |||    
T  33645932 tggttgataagattaagtcgctcgcatttaggtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtctgttcaccat 33645833  T
Q  216 ttt 218  Q
    |||    
T  33645832 ttt 33645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 21563423 - 21563488
Alignment:
Q  124 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 189  Q
    ||||||||||| ||| ||||||||||||||| | | || |||||||||||| | || |||||||||    
T  21563423 aagattaagtcactttcttttacgtggttgagggcaaaatttgtttctctttcattaaattatcat 21563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 30505717 - 30505838
Alignment:
Q  115 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 214  Q
    ||||| |||||||||||||  || || ||||  | |||||||  ||| |||  ||| ||||||||||||||||||   |||||| |||||||||||| ||    
T  30505717 gtggttgataagattaagtttctcgcatttatctagttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttacca 30505816  T
Q  215 ttttaggcattggctaagagtt 236  Q
    | || ||||| |||||| ||||    
T  30505817 tgttgggcataggctaatagtt 30505838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 52577965 - 52578101
Alignment:
Q  94 aaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagt 193  Q
    |||| |||| ||||| | |||||| | |||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||   |    
T  52577965 aaagtttgctcggttcttcaggtgatagataagattaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggtt 52578064  T
Q  194 ggtggcttagtctgtttatcattttaggcattggcta 230  Q
    |||||||||||  ||||  |||| ||||||| |||||    
T  52578065 ggtggcttagtgcgtttgccattctaggcataggcta 52578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 9831377 - 9831476
Alignment:
Q  106 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    ||||| |||||||| |||||||| ||||| |||||||||| |||||||||| |||| || ||| | ||||||||||||||||||   |||||||||||||    
T  9831377 gttattcaggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtc 9831476  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 30972515 - 30972395
Alignment:
Q  85 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 184  Q
    ||||||| |||||| ||| |  |||| |||||||| ||||| |||||||||||  |||| | |||| ||||| |||| |||  ||||||||||||||| |    
T  30972515 tttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactttcatgtggctgaaggcgaaatttccttctcttcccttcaact 30972416  T
Q  185 atcatcagtggtggcttagtc 205  Q
    |||||   |||||||||||||    
T  30972415 atcatggctggtggcttagtc 30972395  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 22653286 - 22653385
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    |||||||| ||||||||||| |||||  | |||| |||||||||| |||| |||| ||   || ||||||||||||||   |||||||||||||||||||    
T  22653286 caggtggttgataagattaaatcgctcacatttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgttta 22653385  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 11131287 - 11131194
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    |||||||| |||| |||||||| |||  |||||  ||||||||||  |||||||||  |||||||||| |||||||||   |||||||||||||    
T  11131287 caggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 11131194  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 19846574 - 19846646
Alignment:
Q  159 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 231  Q
    ||||| || ||||||||||||||||||||||  ||||||| |||||| ||||| ||| || ||||||| ||||    
T  19846574 gaagtatgcttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttgggcattgtctaa 19846646  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 43001717 - 43001801
Alignment:
Q  121 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    |||||||||||||| ||  | |||| |||||||||| ||||||||  | ||||||  ||||||||||||  ||||||||||||||    
T  43001717 gataagattaagtcactaacatttatgtggttgaaggcgaagtttactactcttcatttcaattatcatatgtggtggcttagtc 43001801  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 8831039 - 8830949
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 202  Q
    |||||||| || || |||||||||||  |||||| || |||||||  ||| ||| ||| ||||||||||||||| ||| | ||||||||||    
T  8831039 caggtggttgacaaaattaagtcgctcacttttatgtagttgaaggagaaatttctttatcttcccttcaattaccatgactggtggctta 8830949  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 212
Target Start/End: Complemental strand, 25130538 - 25130441
Alignment:
Q  115 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttat 212  Q
    |||||||||||||| ||||| || ||||| | ||||||||||  ||| |||| | ||||| || |||| ||||||   ||||||||||||| ||||||    
T  25130538 gtggtcgataagatcaagtccctcgctttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgtttat 25130441  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 48336968 - 48337036
Alignment:
Q  121 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 189  Q
    ||||| |||||||||||  |||| | |||||||||| |||| |||  |||||||||||||||| |||||    
T  48336968 gataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcat 48337036  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 8462613 - 8462514
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    |||||||| |||||||||||||| ||  | || | |||||||||| |||| |||| ||||||||||||||||||||||   |||||||||||||||||||    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgttta 8462514  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 5751992 - 5752057
Alignment:
Q  124 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 189  Q
    ||||||||||||||||  ||||||||||||||| |||||| |   ||||||||| |||||||||||    
T  5751992 aagattaagtcgcttgtctttacgtggttgaaggcgaagtattcctctcttcccctcaattatcat 5752057  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 33282823 - 33282913
Alignment:
Q  121 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 211  Q
    ||||| |||||||||||| |||||| ||||||||||   || |||| |||||| ||  |||||||||||   ||||||||||||| |||||    
T  33282823 gataaaattaagtcgcttacttttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgttta 33282913  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 39435582 - 39435484
Alignment:
Q  83 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 181  Q
    |||| |||| |||||| ||| ||||| | |||||||| |||||||||||||| || |  || | |||||||||| |||| |||| ||||||||| ||||    
T  39435582 tattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgagttcatgtggttgaaggcgaaatttgcttctcttcctttca 39435484  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 37929106 - 37929199
Alignment:
Q  112 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    ||||||||||||| ||||||||| || || |||| ||||||||||  ||| |||  | |||||||||| || ||||||   |||||||||||||    
T  37929106 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 37929199  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 33191270 - 33191210
Alignment:
Q  145 acgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 205  Q
    ||||||||||||  ||| |||| | ||||||||||||||||||||   |||||||||||||    
T  33191270 acgtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtc 33191210  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 38738483 - 38738543
Alignment:
Q  171 tcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 231  Q
    ||||||| |||||||||||   ||||||||||| | |||||  ||||||||||||||||||    
T  38738483 tcttcccctcaattatcatggttggtggcttagcccgtttactattttaggcattggctaa 38738543  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 20009 - 19937
Alignment:
Q  228 ctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatatattgttcttgactctgatgtcc 304  Q
    |||||||||||||||||||||||     ||| || ||| |||||||| ||||| ||||||||||||||||||||||||    
T  20009 ctaagagtttcttttctgttttt-----atgctctgttcaggcaactattgtaaatattgttcttgactctgatgtcc 19937  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 24490 - 24558
Alignment:
Q  121 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 189  Q
    ||||| |||||||||||  |||| | |||||||||| |||| |||  |||||||||||||||| |||||    
T  24490 gataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcat 24558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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