View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_low_41 (Length: 300)

Name: NF8961_low_41
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_low_41
NF8961_low_41
[»] chr4 (4 HSPs)
chr4 (23-283)||(26866275-26866534)
chr4 (193-229)||(897451-897487)
chr4 (193-229)||(6610289-6610325)
chr4 (193-229)||(22164268-22164304)
[»] chr6 (2 HSPs)
chr6 (195-256)||(28592688-28592748)
chr6 (189-229)||(8138453-8138493)
[»] chr8 (2 HSPs)
chr8 (190-224)||(33373748-33373782)
chr8 (193-229)||(28439985-28440021)
[»] chr7 (1 HSPs)
chr7 (191-229)||(19793547-19793585)
[»] scaffold0426 (1 HSPs)
scaffold0426 (192-229)||(5838-5875)
[»] scaffold0262 (1 HSPs)
scaffold0262 (192-229)||(15928-15965)
[»] chr5 (1 HSPs)
chr5 (197-229)||(19647511-19647543)
[»] chr1 (1 HSPs)
chr1 (193-233)||(3481583-3481623)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 283
Target Start/End: Original strand, 26866275 - 26866534
Alignment:
Q  23 gtagttccatgttatcaatatctaatatagaataatacggttctataagcttttaaatatatccttcnnnnnnnnngttattaaatatattgtgaattca 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| ||||||||||||||||||||    
T  26866275 gtagtgccatgttatcaatatctaatatagaataatacggttctataagcttttaaatatatccttaaaaaaaaaagtttttaaatatattgtgaattca 26866374  T
Q  123 accatgccatttataaagtaagaataacggtttacacatttgtcacnnnnnnnnnnnnnnnnnnncggttggggtttgaaccccagcccttacatatatt 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||                     |||| ||||||||||||||||||||||||| ||||    
T  26866375 accatgccatttataaagtaagaataacgatttacacatttgtcttttttttttttttttttttgcggtcggggtttgaaccccagcccttacatgtatt 26866474  T
Q  223 atacatttgtctttgacaattaaactaagctcacaaacacacacttgtcacttttgaatat 283  Q
    || |||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  26866475 atgcatt-gtctttgacaattaaactaagttcacaagcacacacttgtcacttttgaatat 26866534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 897487 - 897451
Alignment:
Q  193 ggggtttgaaccccagcccttacatatattatacatt 229  Q
    |||||||||||||| | ||||||||||||||||||||    
T  897487 ggggtttgaaccccggaccttacatatattatacatt 897451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 6610325 - 6610289
Alignment:
Q  193 ggggtttgaaccccagcccttacatatattatacatt 229  Q
    |||||||||||||||| |||| |||||||||||||||    
T  6610325 ggggtttgaaccccagaccttgcatatattatacatt 6610289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 22164268 - 22164304
Alignment:
Q  193 ggggtttgaaccccagcccttacatatattatacatt 229  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  22164268 ggggtttgaaccccagaccttacatatattatgcatt 22164304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 28592688 - 28592748
Alignment:
Q  195 ggtttgaaccccagcccttacatatattatacatttgtctttgacaattaaactaagctcac 256  Q
    |||| ||||||||| ||||||||||||||| || ||||||||| ||||| ||||||||||||    
T  28592688 ggttcgaaccccagaccttacatatattatgca-ttgtctttgccaattgaactaagctcac 28592748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 8138453 - 8138493
Alignment:
Q  189 ggttggggtttgaaccccagcccttacatatattatacatt 229  Q
    ||||| |||||||||||||| ||||||||||||||| ||||    
T  8138453 ggttgaggtttgaaccccagaccttacatatattatgcatt 8138493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 33373748 - 33373782
Alignment:
Q  190 gttggggtttgaaccccagcccttacatatattat 224  Q
    ||||||||||||||||||| |||||||||||||||    
T  33373748 gttggggtttgaaccccagaccttacatatattat 33373782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 28440021 - 28439985
Alignment:
Q  193 ggggtttgaaccccagcccttacatatattatacatt 229  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  28440021 ggggtttgaaccccagaccttacatatattatgcatt 28439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 19793585 - 19793547
Alignment:
Q  191 ttggggtttgaaccccagcccttacatatattatacatt 229  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  19793585 ttggggttcgaaccccagaccttacatatattatacatt 19793547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 5838 - 5875
Alignment:
Q  192 tggggtttgaaccccagcccttacatatattatacatt 229  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  5838 tggggttcgaaccccagaccttacatatattatacatt 5875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 15928 - 15965
Alignment:
Q  192 tggggtttgaaccccagcccttacatatattatacatt 229  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  15928 tggggtttgaaccccagaccttgcatatattatacatt 15965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 19647511 - 19647543
Alignment:
Q  197 tttgaaccccagcccttacatatattatacatt 229  Q
    |||||||||||| ||||||||||||||||||||    
T  19647511 tttgaaccccagaccttacatatattatacatt 19647543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 3481623 - 3481583
Alignment:
Q  193 ggggtttgaaccccagcccttacatatattatacatttgtc 233  Q
    |||||||||||||||| |||| |||||||||| ||||||||    
T  3481623 ggggtttgaaccccagaccttgcatatattatgcatttgtc 3481583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University