View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_low_46 (Length: 294)

Name: NF8961_low_46
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_low_46
NF8961_low_46
[»] chr5 (10 HSPs)
chr5 (149-281)||(16194354-16194486)
chr5 (20-147)||(40682019-40682145)
chr5 (187-269)||(39946551-39946633)
chr5 (158-217)||(39945855-39945914)
chr5 (148-217)||(16195107-16195176)
chr5 (148-191)||(2029051-2029094)
chr5 (148-194)||(23253487-23253533)
chr5 (148-189)||(4082994-4083035)
chr5 (155-195)||(4083668-4083708)
chr5 (148-188)||(20476123-20476163)
[»] chr1 (8 HSPs)
chr1 (145-284)||(6942188-6942327)
chr1 (148-195)||(26240115-26240162)
chr1 (148-191)||(16449556-16449599)
chr1 (148-191)||(16459130-16459173)
chr1 (148-195)||(26240871-26240918)
chr1 (148-194)||(12449313-12449359)
chr1 (148-197)||(24847784-24847833)
chr1 (148-197)||(24848424-24848473)
[»] chr4 (11 HSPs)
chr4 (148-195)||(24666130-24666177)
chr4 (148-194)||(14527577-14527623)
chr4 (148-195)||(18362936-18362983)
chr4 (148-195)||(36599943-36599990)
chr4 (148-191)||(34451441-34451484)
chr4 (148-195)||(35605992-35606039)
chr4 (148-217)||(25725786-25725855)
chr4 (152-189)||(34450820-34450857)
chr4 (149-194)||(38519188-38519233)
chr4 (152-189)||(47156638-47156675)
chr4 (142-194)||(51386451-51386503)
[»] chr3 (11 HSPs)
chr3 (147-219)||(54308453-54308525)
chr3 (148-191)||(47571197-47571240)
chr3 (148-191)||(49349677-49349720)
chr3 (148-218)||(20807938-20808008)
chr3 (152-191)||(47571943-47571982)
chr3 (148-195)||(49350270-49350317)
chr3 (148-191)||(53344745-53344788)
chr3 (138-195)||(9830562-9830620)
chr3 (148-194)||(53242667-53242713)
chr3 (148-197)||(4706954-4707003)
chr3 (148-196)||(20808606-20808654)
[»] chr8 (8 HSPs)
chr8 (148-195)||(22632323-22632370)
chr8 (148-195)||(22632968-22633015)
chr8 (148-191)||(42094010-42094053)
chr8 (148-195)||(16911046-16911093)
chr8 (148-194)||(4402288-4402334)
chr8 (148-194)||(26847098-26847144)
chr8 (148-194)||(26847722-26847768)
chr8 (133-183)||(33321484-33321533)
[»] chr7 (9 HSPs)
chr7 (148-191)||(17114146-17114189)
chr7 (148-191)||(10590299-10590342)
chr7 (148-195)||(28007158-28007205)
chr7 (148-194)||(24874579-24874625)
chr7 (148-194)||(28007814-28007860)
chr7 (152-194)||(36611556-36611598)
chr7 (152-194)||(42817803-42817845)
chr7 (149-183)||(44876946-44876980)
chr7 (148-201)||(3314956-3315009)
[»] chr6 (1 HSPs)
chr6 (148-195)||(16718994-16719041)
[»] chr2 (5 HSPs)
chr2 (152-191)||(44986817-44986856)
chr2 (135-194)||(127021-127080)
chr2 (140-194)||(24394886-24394941)
chr2 (148-194)||(7754968-7755014)
chr2 (152-194)||(20606922-20606964)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 16194354 - 16194486
Alignment:
Q  149 tggattctagggtgatggatcaattaagtccctcatcggtgaaccattttattccaccgtcagattaaatatgtccatagaatttcattacttattacca 248  Q
    |||||| ||| |||| ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  16194354 tggattatagagtgagggatcaattaagtccatcatcagtgaaccactttattccaccgtcagattaaatatgtctctagaatttcattacttattacca 16194453  T
Q  249 cactggatctttgctccatgttctctcttctct 281  Q
    ||||||||||||||||||||| |||| ||||||    
T  16194454 cactggatctttgctccatgtcctcttttctct 16194486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 40682145 - 40682019
Alignment:
Q  20 caaacttgtcggatgcaattcatcctccttacttggtgcattcaacatattagttagtcatagtgtgctttgacggagccaagnnnnnnntgttcggatg 119  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||       ||||||||||    
T  40682145 caaacttgtcggatgcaattcatcttccttacttggtgcattcaacatattagttagtca-agtgtgctttggcggagccaagaaaaaaatgttcggatg 40682047  T
Q  120 ggccactaaaagaaactataattttata 147  Q
    |||||| |||||||||||||||||||||    
T  40682046 ggccaccaaaagaaactataattttata 40682019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 39946633 - 39946551
Alignment:
Q  187 gtgaaccattttattccaccgtcagattaaatatgtccatagaatttcattacttattaccacactggatctttgctccatgt 269  Q
    |||||||| || ||| |||||| |||||||||| ||| | |  ||||||||||||||||||||||||||||||||||||||||    
T  39946633 gtgaaccacttaatttcaccgttagattaaatacgtctacaagatttcattacttattaccacactggatctttgctccatgt 39946551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 39945855 - 39945914
Alignment:
Q  158 gggtgatggatcaattaagtccctcatcggtgaaccattttattccaccgtcagattaaa 217  Q
    |||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  39945855 gggtgagggaccaattaagtccctcatcggtgtaccactttattccaccgtcagattaaa 39945914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 16195176 - 16195107
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccattttattccaccgtcagattaaa 217  Q
    |||||||||||||||| ||||||||||||||| |||  |||| ||||  |||||||||||||||||||||    
T  16195176 gtggattctagggtgagggatcaattaagtccatcactggtgtaccacattattccaccgtcagattaaa 16195107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 2029094 - 2029051
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| || |||||||||||||||| |||||||    
T  2029094 gtggattctagggtgagggctcaattaagtccctcaccggtgaa 2029051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 23253533 - 23253487
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||    
T  23253533 gtggattctagggtgagggtccaattaagtccctcaccggtgaacca 23253487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 4082994 - 4083035
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtg 189  Q
    |||||||||||||||| ||| | |||||||||||||||||||    
T  4082994 gtggattctagggtgagggagctattaagtccctcatcggtg 4083035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 4083708 - 4083668
Alignment:
Q  155 ctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    ||||||||| ||| ||||||||||||||||||||| |||||    
T  4083708 ctagggtgagggagcaattaagtccctcatcggtggaccat 4083668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 20476163 - 20476123
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggt 188  Q
    ||||||| |||||||| ||||||||||||||||||| ||||    
T  20476163 gtggattttagggtgagggatcaattaagtccctcaccggt 20476123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 6942188 - 6942327
Alignment:
Q  145 atagtggattctagggtgatggatcaattaagtccctcatcggtgaaccattttattccaccgtcagattaaatatgtccatagaatttcattacttatt 244  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| | |  |||||| ||||||||    
T  6942188 atagtggattctaaggtgagggatcaattaagtccttcatcggtgaaccactttattccaccgttagattaaatatgtctacaagatttcaatacttatt 6942287  T
Q  245 accacactggatctttgctccatgttctctcttctctgtg 284  Q
    ||||||||| ||||||||||||||| |||| |||||||||    
T  6942288 accacactgaatctttgctccatgtcctctattctctgtg 6942327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 26240115 - 26240162
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  26240115 gtggattctagggtgagggatcaattaagtccctcaccggtgaaccat 26240162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 16449556 - 16449599
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| || |||||||||||||||| |||||||    
T  16449556 gtggattctagggtgagggttcaattaagtccctcaccggtgaa 16449599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 16459130 - 16459173
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| || |||||||||||||||| |||||||    
T  16459130 gtggattctagggtgagggttcaattaagtccctcaccggtgaa 16459173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 26240918 - 26240871
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| || |||||||||||||||| ||||| |||||    
T  26240918 gtggattctagggtgagggttcaattaagtccctcaccggtggaccat 26240871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 12449359 - 12449313
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    ||||||| |||||||| ||||||||||||||||||| ||||| ||||    
T  12449359 gtggattttagggtgagggatcaattaagtccctcaccggtggacca 12449313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 24847784 - 24847833
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccattt 197  Q
    |||||||||||||||| || || ||||||||||||| ||||| |||||||    
T  24847784 gtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 24847833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 24848473 - 24848424
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccattt 197  Q
    |||||||||||||||| || || ||||||||||||| ||||| |||||||    
T  24848473 gtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 24848424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 24666130 - 24666177
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  24666130 gtggattctagggtgagggatcaattaagtccctcaccggtgaaccat 24666177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 14527623 - 14527577
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  14527623 gtggattctagggtgagggatcaattaagtccctcaccggtgaacca 14527577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 18362936 - 18362983
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||    
T  18362936 gtggattctagggtgagggatcaattaagtctttcatcggtgaaccat 18362983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 36599990 - 36599943
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||||    
T  36599990 gtggattctagggtgagggatcaattaagtctttcatcggtgaaccat 36599943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 34451484 - 34451441
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||    
T  34451484 gtggattctagggtgagggatcaattaagtacctcaccggtgaa 34451441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 35605992 - 35606039
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||| |||||||||||||||| |||| |||||    
T  35605992 gtggattctagggtgagggagcaattaagtccctcattggtggaccat 35606039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 25725855 - 25725786
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccattttattccaccgtcagattaaa 217  Q
    ||||| |||||||||| ||| ||||||||||||||| ||||| ||||||  ||| | |||| ||||||||    
T  25725855 gtggagtctagggtgagggagcaattaagtccctcaccggtggaccattcaatttcgccgttagattaaa 25725786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 34450820 - 34450857
Alignment:
Q  152 attctagggtgatggatcaattaagtccctcatcggtg 189  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  34450820 attctagggtgagggatcaattaagtccctcaccggtg 34450857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 38519233 - 38519188
Alignment:
Q  149 tggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    ||||||||||||||| ||| ||||||||||||||| ||||| ||||    
T  38519233 tggattctagggtgaaggagcaattaagtccctcaccggtgtacca 38519188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 47156638 - 47156675
Alignment:
Q  152 attctagggtgatggatcaattaagtccctcatcggtg 189  Q
    |||||||||||| || ||||||||||||||||||||||    
T  47156638 attctagggtgagggttcaattaagtccctcatcggtg 47156675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 51386451 - 51386503
Alignment:
Q  142 tttatagtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    ||||| ||||||| |||||||| || |||||||||||||||| | ||||||||    
T  51386451 tttatggtggattttagggtgagggttcaattaagtccctcaccagtgaacca 51386503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 54308453 - 54308525
Alignment:
Q  147 agtggattctagggtgatggatcaattaagtccctcatcggtgaaccattttattccaccgtcagattaaata 219  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||| ||  ||  ||||| ||||||||||    
T  54308453 agtggattctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagattaaata 54308525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 47571197 - 47571240
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  47571197 gtggattctagggtgagggatcaattaagtccctcaccggtgaa 47571240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 49349677 - 49349720
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  49349677 gtggattctagggtgagggatcaattaagtccctcaccggtgaa 49349720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 20807938 - 20808008
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccattttattccaccgtcagattaaat 218  Q
    |||||||||||||||| || |||||||||||||||| ||||| ||||||  ||| |||| ||| |||||||    
T  20807938 gtggattctagggtgagggttcaattaagtccctcaccggtgtaccattaaatttcaccatcaaattaaat 20808008  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 47571982 - 47571943
Alignment:
Q  152 attctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||| ||||||||||||||||||| |||||||    
T  47571982 attctagggtgagggatcaattaagtccctcaccggtgaa 47571943  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 49350317 - 49350270
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| || |||||||||||||||  |||||||||||    
T  49350317 gtggattctagggtgagggttcaattaagtccctcgccggtgaaccat 49350270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 53344788 - 53344745
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| |||||||| |||||||||| |||||||    
T  53344788 gtggattctagggtgagggatcaatcaagtccctcaccggtgaa 53344745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 9830562 - 9830620
Alignment:
Q  138 taattttata-gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||| ||||||||| |||||| || |||||||||||||||| ||||| |||||    
T  9830562 taattttataagtggattctcgggtgagggttcaattaagtccctcaccggtggaccat 9830620  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 53242667 - 53242713
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    ||||||| |||||||| | ||||||||||||||||||||||| ||||    
T  53242667 gtggattatagggtgaggaatcaattaagtccctcatcggtggacca 53242713  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 4707003 - 4706954
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccattt 197  Q
    |||||||||||||||| || || ||||||||||||| ||||| |||||||    
T  4707003 gtggattctagggtgagggttctattaagtccctcaccggtgtaccattt 4706954  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 20808654 - 20808606
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccatt 196  Q
    |||||||||||||||| || |||| ||||||||||| ||||| ||||||    
T  20808654 gtggattctagggtgagggttcaagtaagtccctcaccggtgtaccatt 20808606  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 22632323 - 22632370
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  22632323 gtggattctagggtgagggatcaattaagtccctcaccggtggaccat 22632370  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 22633015 - 22632968
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  22633015 gtggattctagggtgagggatcaattaagtccctcaccggtggaccat 22632968  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 42094010 - 42094053
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  42094010 gtggattctagggtgagggatcaattaagtccctcaccggtgaa 42094053  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 16911093 - 16911046
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| || |||||||||||||||| ||||| |||||    
T  16911093 gtggattctagggtgagggctcaattaagtccctcaccggtgtaccat 16911046  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 4402334 - 4402288
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||||||| || || ||||||||||||| ||||||||||    
T  4402334 gtggattctagggtgagggttctattaagtccctcaccggtgaacca 4402288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 26847098 - 26847144
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||    
T  26847098 gtggattctagggtgagggtccaattaagtccctcaccggtgaacca 26847144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 26847768 - 26847722
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||| ||| ||||||||||||| ||||| ||||||||||    
T  26847768 gtggattctaggatgagggatcaattaagttcctcaccggtgaacca 26847722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 33321484 - 33321533
Alignment:
Q  133 aactataattttatagtggattctagggtgatggatcaattaagtccctca 183  Q
    |||||| |||||| ||||||||||| |||||||| ||||||||||||||||    
T  33321484 aactattatttta-agtggattctaaggtgatggttcaattaagtccctca 33321533  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 17114146 - 17114189
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  17114146 gtggattctagggtgagggttcaattaagtccctcatcggtgaa 17114189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 10590299 - 10590342
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    ||||||||||||||||  | ||||||||||||||||||||||||    
T  10590299 gtggattctagggtgagagttcaattaagtccctcatcggtgaa 10590342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 28007158 - 28007205
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||| ||||||||||||||| ||||| |||||    
T  28007158 gtggattctagggtgagggagcaattaagtccctcaccggtggaccat 28007205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 24874625 - 24874579
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||||||| || ||||||| |||||||||||||| ||||    
T  24874625 gtggattctagggtgagggttcaattaggtccctcatcggtggacca 24874579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 28007860 - 28007814
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||||||||||| | ||||||||||||| ||||| ||||    
T  28007860 gtggattctagggtgatggagctattaagtccctcaccggtggacca 28007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 36611556 - 36611598
Alignment:
Q  152 attctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||| || |||||||||||||||| ||||||||||    
T  36611556 attctagggtgagggttcaattaagtccctcaccggtgaacca 36611598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 42817803 - 42817845
Alignment:
Q  152 attctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||||||  ||||||||||||||||||||| ||||    
T  42817803 attctagggtgatggtccaattaagtccctcatcggtggacca 42817845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 44876980 - 44876946
Alignment:
Q  149 tggattctagggtgatggatcaattaagtccctca 183  Q
    ||||||||||||||| |||||||||||||||||||    
T  44876980 tggattctagggtgagggatcaattaagtccctca 44876946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 3314956 - 3315009
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccattttatt 201  Q
    |||||||||| ||||| || |||||||||||||||| ||||| |||| ||||||    
T  3314956 gtggattctacggtgagggttcaattaagtccctcaccggtgtaccactttatt 3315009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 16719041 - 16718994
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaaccat 195  Q
    |||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  16719041 gtggattctagggtgacggatcaattaagtccctcaccggtggaccat 16718994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 191
Target Start/End: Original strand, 44986817 - 44986856
Alignment:
Q  152 attctagggtgatggatcaattaagtccctcatcggtgaa 191  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  44986817 attctagggtgagggatcaattaagtccctcatcggtgaa 44986856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 127021 - 127080
Alignment:
Q  135 ctataattttatagtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    ||||||||| || |||||||||||||||| || |||| ||||||||||||| ||| ||||    
T  127021 ctataatttaatggtggattctagggtgagggttcaactaagtccctcatcagtggacca 127080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 24394941 - 24394886
Alignment:
Q  140 attttatag-tggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    ||||||||| |||||||||| |||  ||||||||||||||||||||||||| ||||    
T  24394941 attttataggtggattctagagtgggggatcaattaagtccctcatcggtggacca 24394886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 7755014 - 7754968
Alignment:
Q  148 gtggattctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||||||| ||||||||||||||| ||| ||||| ||||    
T  7755014 gtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 20606964 - 20606922
Alignment:
Q  152 attctagggtgatggatcaattaagtccctcatcggtgaacca 194  Q
    |||||||||||| || |||||||||||||||| ||||||||||    
T  20606964 attctagggtgagggttcaattaagtccctcaccggtgaacca 20606922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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