View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8961_low_5 (Length: 826)
Name: NF8961_low_5
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 796; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 796; E-Value: 0
Query Start/End: Original strand, 1 - 812
Target Start/End: Complemental strand, 44830616 - 44829805
Alignment:
| Q |
1 |
tccttgcatcatgtataataccactatgtgcatctcttgaccacctctttaacattgatgtttggtgcatggcaacaaagtttaacatcattaatttgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44830616 |
tccttgcatcatgtataataccactatgtgcatctcttgaccacctctttaacattgatgtttggtgcatggcaacaaagtttaacatcattaatttgcc |
44830517 |
T |
|
| Q |
101 |
tcaaagacttttagtgcatggcaacaaagtattccaaaagtctcaaaccttctacaactacatgatatagatgactgtacaggatcaaatagaactctcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44830516 |
tcaaagacttttagtgcatggcaacaaagtattccaaaagtctcaaaccttctacaactacatgatatagatgactgtacaggatcaaatagaactctcc |
44830417 |
T |
|
| Q |
201 |
actctccttccttattgaccaagctgatgacatattcaaatggaagttgggacagatattctttccttatgcaagccgctaaagataaggaaaattcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
44830416 |
actctccttccttattgaccaagctgatgacatattcaaatggaagttgggacagatattttttccgtatgcaagccgctaaagataaggaaaattcatt |
44830317 |
T |
|
| Q |
301 |
atgaaatttgtcaaaaatggcaggtgtatgtgtatatttgagcgagttgcactaaaattggtgaatagttgtatatcaaatgtggtagtttatgccgaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44830316 |
atgaaatttgtcaaaaatggcaggtgtatgtgtatatttgagcgagttgcactaaaattggtgaatagttgtatatcaaatgtggtagtttatgccgaga |
44830217 |
T |
|
| Q |
401 |
ctcatattcacaaactaactcgttaattgtatggattttcctccacaattctctcaaaaatcagtaacattgatgtttggtgtcatacatatgccttaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44830216 |
ctcatattcacaaactaactcgttaattgtatcgattttcctccacaactctctcaaaaatcagtaacattgatgtttggtgtcatacatatgccttaaa |
44830117 |
T |
|
| Q |
501 |
atcagaattcaaactctcactaagttgagtgcttcgcattcctagagtgaatgcttccttcatatgacatgcttcccattttcccttaatagcatacatc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44830116 |
atcagaattcaaactctcactaagttgagtgcttcgcattcctagagtgaatgcttccttcatatgacatgcttcccattttcccttaatagcatacatc |
44830017 |
T |
|
| Q |
601 |
gacttcacccaattgttttcgttgacattaaattctgaaaccaacttgctccaagctgtctcaaacttctcctcttggtcataatcatacatgcacttct |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44830016 |
gacttcacccaattgttttcgttgacattaaattctgaaaccaacttgctccaagctgtctcaaacttctcctcttggtcataatcatacatgcacttct |
44829917 |
T |
|
| Q |
701 |
taaaatcagccaagaaattatgaattccttttttcatcaagttaccaaggtgttttataccattctgcatcaagctgtgccatgtacatatataacccat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44829916 |
taaaatcagccaagaaattatgaattccttttttcatcaagttaccaaggtgttttataccattctgcatcaagctgtgccatgtacatatataacccat |
44829817 |
T |
|
| Q |
801 |
gtcaagtctctg |
812 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44829816 |
gtcaagtctctg |
44829805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 505 - 709
Target Start/End: Original strand, 6273635 - 6273839
Alignment:
| Q |
505 |
gaattcaaactctcactaagttgagtgcttcgcattcctagagtgaatgcttccttcatatgacatgcttcccattttcccttaatagcatacatcgact |
604 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||| |||| ||||| ||||||| | |||||||| ||| ||| ||||||| || | |
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|
| T |
6273635 |
gaatttaaactctcactaagttgagtgcttcgcattccaagagtgatagctttgttcatgtgacatgatgcccatttttgcttgataccatacattgatt |
6273734 |
T |
|
| Q |
605 |
tcacccaattgttttcgttgacattaaattctgaaaccaacttgctccaagctgtctcaaacttctcctcttggtcataatcatacatgcacttcttaaa |
704 |
Q |
| |
|
||||||||||||| | | || ||||| || |||||||||||||||||||| ||||||||| ||||| || || |||||||||||||||||||| |
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|
| T |
6273735 |
tcacccaattgttaccaaatagatcaaattttgcaaccaacttgctccaagctgcttcaaacttcacctctgaatcgtattcatacatgcacttcttaaa |
6273834 |
T |
|
| Q |
705 |
atcag |
709 |
Q |
| |
|
|||| |
|
|
| T |
6273835 |
gtcag |
6273839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 6273223 - 6273383
Alignment:
| Q |
94 |
atttgcctcaaagacttttagtgcatggcaacaaagtattccaaaagtctcaaaccttctacaactacatgatatagatgactgtacaggatcaaataga |
193 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| ||||| | |||||||||||| || ||||| ||||||||||||| | || ||||||||||| |
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|
| T |
6273223 |
atttgcctcaatgacttttaatgcatgacaacagagtatgcgaaaagtctcaaattttttacaagtacatgatatagagaaagttattggatcaaatagt |
6273322 |
T |
|
| Q |
194 |
actctccactctccttccttattgaccaagctgatgacatattcaaatggaagttgggaca |
254 |
Q |
| |
|
||| |||||||||||||| || | || | |||| |||||||||||||||||||| |||| |
|
|
| T |
6273323 |
actgtccactctccttccactttaaacatggtgataacatattcaaatggaagttgagaca |
6273383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 6273508 - 6273549
Alignment:
| Q |
383 |
tggtagtttatgccgagactcatattcacaaactaactcgtt |
424 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||| |
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|
| T |
6273508 |
tggtagtttatgtcgagactcatactcacatactaactcgtt |
6273549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 9e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 505 - 709
Target Start/End: Complemental strand, 31640657 - 31640453
Alignment:
| Q |
505 |
gaattcaaactctcactaagttgagtgcttcgcattcctagagtgaatgcttccttcatatgacatgcttcccattttcccttaatagcatacatcgact |
604 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| | |||||||| ||| ||| || |||| || | |
|
|
| T |
31640657 |
gaatttaaactctcactaagttgagtgcttcgcattccaagagtgataactttgttcatgtgacatgatgcccatttttgcttgataccacacattgatt |
31640558 |
T |
|
| Q |
605 |
tcacccaattgttttcgttgacattaaattctgaaaccaacttgctccaagctgtctcaaacttctcctcttggtcataatcatacatgcacttcttaaa |
704 |
Q |
| |
|
||||||||||||| | | || ||||| || |||||||||||||||||||| ||||||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
31640557 |
tcacccaattgttaccaaatagatcaaattttgcaaccaacttgctccaagctgcttcaaacttcacctctgaatcgtattcatacatgcacttcttaaa |
31640458 |
T |
|
| Q |
705 |
atcag |
709 |
Q |
| |
|
|||| |
|
|
| T |
31640457 |
gtcag |
31640453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 94 - 257
Target Start/End: Complemental strand, 31641069 - 31640906
Alignment:
| Q |
94 |
atttgcctcaaagacttttagtgcatggcaacaaagtattccaaaagtctcaaaccttctacaactacatgatatagatgactgtacaggatcaaataga |
193 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| ||||| |||||||||||||| || ||||| ||||||||||||| | || ||||||||||| |
|
|
| T |
31641069 |
atttgcctcaatgacttttaatgcatgacaacagagtatgccaaaagtctcaaattttttacaagtacatgatatagagaaagttattggatcaaatagt |
31640970 |
T |
|
| Q |
194 |
actctccactctccttccttattgaccaagctgatgacatattcaaatggaagttgggacagat |
257 |
Q |
| |
|
||| |||||||||||||| || | || | |||| |||||||||||||||||||| ||||||| |
|
|
| T |
31640969 |
actgtccactctccttccactttaaacatggtgataacatattcaaatggaagttgagacagat |
31640906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 582
Target Start/End: Complemental strand, 5910500 - 5910425
Alignment:
| Q |
507 |
attcaaactctcactaagttgagtgcttcgcattcctagagtgaatgcttccttcatatgacatgcttcccatttt |
582 |
Q |
| |
|
||||||||| ||||||| ||| || |||||||| || || || |||||||||||||||| |||||| |||||||| |
|
|
| T |
5910500 |
attcaaactttcactaacttgtgtacttcgcatgccaagtgttaatgcttccttcatataacatgcagcccatttt |
5910425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 31640784 - 31640743
Alignment:
| Q |
383 |
tggtagtttatgccgagactcatattcacaaactaactcgtt |
424 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
31640784 |
tggtagtttatgtcgagactcatactcacatactaactcgtt |
31640743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 582
Target Start/End: Original strand, 7282638 - 7282713
Alignment:
| Q |
507 |
attcaaactctcactaagttgagtgcttcgcattcctagagtgaatgcttccttcatatgacatgcttcccatttt |
582 |
Q |
| |
|
||||||||| ||||||| ||| || |||||||| || || || |||||||||||||||| |||||| |||||||| |
|
|
| T |
7282638 |
attcaaactttcactaacttgtgtacttcgcatgccaagtgttaatgcttccttcatataacatgcagcccatttt |
7282713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 582
Target Start/End: Original strand, 10466036 - 10466111
Alignment:
| Q |
507 |
attcaaactctcactaagttgagtgcttcgcattcctagagtgaatgcttccttcatatgacatgcttcccatttt |
582 |
Q |
| |
|
||||||||| ||||||| ||| || |||||||| || || || |||||||||||||||| |||||| |||||||| |
|
|
| T |
10466036 |
attcaaactttcactaacttgtgtacttcgcatgccaagtgttaatgcttccttcatataacatgcagcccatttt |
10466111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 582
Target Start/End: Original strand, 43735688 - 43735763
Alignment:
| Q |
507 |
attcaaactctcactaagttgagtgcttcgcattcctagagtgaatgcttccttcatatgacatgcttcccatttt |
582 |
Q |
| |
|
||||||||| ||||||| ||| || |||||||| || || || |||||||||||||||| |||||| |||||||| |
|
|
| T |
43735688 |
attcaaactttcactaacttgtgtacttcgcatgccaagtgttaatgcttccttcatataacatgcagcccatttt |
43735763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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