View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_low_55 (Length: 252)

Name: NF8961_low_55
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_low_55
NF8961_low_55
[»] chr3 (13 HSPs)
chr3 (67-238)||(24761849-24762020)
chr3 (68-233)||(24815915-24816080)
chr3 (68-238)||(53352712-53352882)
chr3 (68-228)||(53027713-53027873)
chr3 (67-205)||(31685076-31685214)
chr3 (67-205)||(37982348-37982486)
chr3 (68-238)||(12538588-12538756)
chr3 (68-205)||(53973270-53973407)
chr3 (75-205)||(19882095-19882225)
chr3 (68-205)||(2549937-2550073)
chr3 (68-205)||(17681767-17681903)
chr3 (75-122)||(47763981-47764028)
chr3 (194-238)||(53351126-53351170)
[»] scaffold0096 (1 HSPs)
scaffold0096 (67-238)||(27409-27578)
[»] scaffold0035 (1 HSPs)
scaffold0035 (62-205)||(35057-35200)
[»] chr7 (5 HSPs)
chr7 (67-205)||(1262087-1262225)
chr7 (68-205)||(43071366-43071503)
chr7 (67-205)||(26909965-26910103)
chr7 (67-205)||(48849791-48849929)
chr7 (75-144)||(22007347-22007416)
[»] chr8 (10 HSPs)
chr8 (68-205)||(14678005-14678142)
chr8 (68-205)||(5657771-5657908)
chr8 (68-205)||(27541543-27541679)
chr8 (68-205)||(31100856-31100993)
chr8 (67-143)||(24788079-24788155)
chr8 (68-143)||(23738657-23738731)
chr8 (91-234)||(5662589-5662731)
chr8 (68-121)||(33689362-33689415)
chr8 (64-127)||(8158457-8158520)
chr8 (67-127)||(24787157-24787219)
[»] chr5 (9 HSPs)
chr5 (68-205)||(7473473-7473610)
chr5 (68-205)||(22009512-22009649)
chr5 (65-205)||(9043799-9043939)
chr5 (69-205)||(30442531-30442667)
chr5 (74-238)||(22004408-22004571)
chr5 (68-144)||(19085422-19085498)
chr5 (79-165)||(26840988-26841074)
chr5 (68-126)||(30463113-30463172)
chr5 (132-160)||(26851981-26852009)
[»] chr2 (6 HSPs)
chr2 (67-205)||(23348964-23349102)
chr2 (79-205)||(12741699-12741825)
chr2 (68-205)||(18355297-18355434)
chr2 (68-205)||(10328875-10329013)
chr2 (66-209)||(1615895-1616037)
chr2 (69-220)||(24454516-24454666)
[»] chr4 (3 HSPs)
chr4 (68-205)||(29863345-29863482)
chr4 (67-129)||(12506435-12506497)
chr4 (91-143)||(24260243-24260294)
[»] chr6 (7 HSPs)
chr6 (75-205)||(33045415-33045545)
chr6 (75-234)||(8976411-8976570)
chr6 (68-197)||(10092512-10092641)
chr6 (67-173)||(3065697-3065802)
chr6 (67-144)||(16246701-16246778)
chr6 (75-144)||(30908414-30908483)
chr6 (69-143)||(4660222-4660295)
[»] scaffold0045 (1 HSPs)
scaffold0045 (68-205)||(11618-11755)
[»] scaffold0596 (1 HSPs)
scaffold0596 (68-205)||(654-791)
[»] chr1 (3 HSPs)
chr1 (1-69)||(12663043-12663111)
chr1 (72-144)||(50990911-50990983)
chr1 (67-115)||(25223218-25223266)
[»] scaffold0157 (1 HSPs)
scaffold0157 (67-129)||(13980-14042)
[»] scaffold0475 (1 HSPs)
scaffold0475 (77-143)||(7520-7585)
[»] scaffold0093 (1 HSPs)
scaffold0093 (132-160)||(43794-43822)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 24762020 - 24761849
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24762020 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctc 24761921  T
Q  167 atcatttagctcagagtgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcctgat 238  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24761920 atcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcctgat 24761849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 68 - 233
Target Start/End: Original strand, 24815915 - 24816080
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24815915 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctca 24816014  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgc 233  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24816015 tcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgc 24816080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 53352882 - 53352712
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53352882 atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaacctaaacggttttggctccaaaacgatgctgaccgttggatctca 53352783  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcctgat 238  Q
    |||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  53352782 tcatttggctcagtgtgcatctcatcctttgatttaatttgacttcaaacttttatttcctcatgcctgat 53352712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 68 - 228
Target Start/End: Complemental strand, 53027873 - 53027713
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  53027873 atcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaacctaaatggttttgactccaaaatgatgctgaccgttggatctca 53027774  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaatttgacttcaaacttttatttccc 228  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  53027773 tcatttggctcagcatgcatctcatcctttgatctaatttgacttcaaacttttatttccc 53027713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 31685076 - 31685214
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |  | |||||| |||||    
T  31685076 aatcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctc 31685175  T
Q  167 atcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    ||||||| ||| ||  |||||||||||||||||||||||    
T  31685176 atcatttggctaagcatgcatctcatcctttgatctaat 31685214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 37982348 - 37982486
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  ||||||||||||||    
T  37982348 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctc 37982447  T
Q  167 atcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    ||||||| ||| ||  ||||||||||||||| |||||||    
T  37982448 atcatttggctaagcatgcatctcatcctttaatctaat 37982486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 12538756 - 12538588
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||| || ||||||| ||||||||||||||||||||||||||||||||||||| | | |  | |||||||||||||    
T  12538756 atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctca 12538658  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcctgat 238  Q
    |||||| ||| ||  |||||| |||||||||||||||||| |||||||||||| | || ||||||||||||    
T  12538657 tcatttggctaagcatgcatcacatcctttgatctaatttaacttcaaactttcaatt-cccatgcctgat 12538588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 53973407 - 53973270
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||| | | |  | |||||||||||||    
T  53973407 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaatcaagggaggccgttggatctca 53973308  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  |||||||||||||||||||||||    
T  53973307 tcatttggctaagcctgcatctcatcctttgatctaat 53973270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 19882225 - 19882095
Alignment:
Q  75 ttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctcatcattta 174  Q
    |||||||||||| || ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||| | |  |||||||||||||||||||||     
T  19882225 ttatatctaatctttgttaacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttg 19882126  T
Q  175 gctcagagtgcatctcatcctttgatctaat 205  Q
    ||| ||  |||||||||||||||||||||||    
T  19882125 gctaagcatgcatctcatcctttgatctaat 19882095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 2549937 - 2550073
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |  | ||||||||||| |    
T  2549937 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-a 2550035  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  |||||||||||||||||| ||||    
T  2550036 tcatttggctaagcatgcatctcatcctttgatttaat 2550073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 17681767 - 17681903
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | | |  | |||||||||||||    
T  17681767 atcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caaggggggccgttggatctca 17681865  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| | | ||  |||||||||||||||||||||||    
T  17681866 tcatttggttaagcatgcatctcatcctttgatctaat 17681903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 47764028 - 47763981
Alignment:
Q  75 ttatatctaatccttcttaacattgctaatgactttgcaaaccctaaa 122  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaa 47763981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 53351170 - 53351126
Alignment:
Q  194 ctttgatctaatttgacttcaaacttttatttccccatgcctgat 238  Q
    |||||||||||| |||||||||| ||| |||||||||| ||||||    
T  53351170 ctttgatctaatgtgacttcaaagtttcatttccccatacctgat 53351126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 27409 - 27578
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |  | ||||||||||||    
T  27409 aatcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaa-caagggaggccgttggatctc 27507  T
Q  167 atcatttagctcagagtgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcctgat 238  Q
    ||||||| ||| ||  |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  27508 atcatttggctaagcatgcatctcatcctttgatctaatttgacttcaaactttcattt-cccatgcctgat 27578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 35057 - 35200
Alignment:
Q  62 tatgcaatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttgg 161  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  |   |||||    
T  35057 tatgcaatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttgg 35156  T
Q  162 atctcatcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||||||||| ||| ||  |||||||||||||||||||||||    
T  35157 atctcatcatttggctaagcatgcatctcatcctttgatctaat 35200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 1262087 - 1262225
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    ||||||||||||    
T  1262087 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctc 1262186  T
Q  167 atcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    ||||||| ||| ||  |||||||||||||||||||||||    
T  1262187 atcatttggctaagcatgcatctcatcctttgatctaat 1262225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 43071503 - 43071366
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  | |||||||||||||    
T  43071503 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 43071404  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  |||||||||||||||||||||||    
T  43071403 tcatttggctaagcatgcatctcatcctttgatctaat 43071366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 26910103 - 26909965
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |  |||| ||||||||     
T  26910103 aatcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatctt 26910004  T
Q  167 atcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    ||||||| ||| ||  |||||||||||||||||||||||    
T  26910003 atcatttggctaagcatgcatctcatcctttgatctaat 26909965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 48849929 - 48849791
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | |      ||||||||||    
T  48849929 aatcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctc 48849830  T
Q  167 atcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    ||||||| ||| ||  |||||||||||||||||||||||    
T  48849829 atcatttggctaagcatgcatctcatcctttgatctaat 48849791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 22007347 - 22007416
Alignment:
Q  75 ttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 144  Q
    |||||||||||  || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  22007347 ttatatctaatttttgttaacattgctaatgactttacaaaccctaaatctaaatggttttggctccaaa 22007416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 14678142 - 14678005
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |  | |||||||||||||    
T  14678142 atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 14678043  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  |||||||||||||||||||||||    
T  14678042 tcatttggctaagcatgcatctcatcctttgatctaat 14678005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 5657771 - 5657908
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | |  | |||||||||||||    
T  5657771 atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctca 5657870  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| | | ||  |||||||||||||||||||||||    
T  5657871 tcatttggttaagcatgcatctcatcctttgatctaat 5657908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 27541679 - 27541543
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |    |||||||||||||    
T  27541679 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggctttggctcc-aaacaagggacgccgttggatctca 27541581  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  |||||||||||||||||||||||    
T  27541580 tcatttggctaagcatgcatctcatcctttgatctaat 27541543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 31100993 - 31100856
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |  | ||||| |||||||    
T  31100993 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctca 31100894  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| | | ||  || ||||||||||||||||||||    
T  31100893 tcatttggttaagcatgtatctcatcctttgatctaat 31100856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 24788155 - 24788079
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 143  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||| | |||||||| ||||    
T  24788155 aatcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaacctaattagttttggcgccaa 24788079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 23738657 - 23738731
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 143  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  23738657 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 23738731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 234
Target Start/End: Original strand, 5662589 - 5662731
Alignment:
Q  91 ttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctcatcatttagctcagagtgcatctc 190  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||| ||| ||||  | | |  | ||||| ||||||||||||| |||  |  | ||||||    
T  5662589 ttaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaat-caaggaggtccgttagatctcatcatttggctaggcattcatctc 5662687  T
Q  191 atcctttgatctaatttgacttcaaacttttatttccccatgcc 234  Q
    |||||||||| |||| |||||||||||||| |||||||||||||    
T  5662688 atcctttgatttaatctgacttcaaactttcatttccccatgcc 5662731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 33689415 - 33689362
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaa 121  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||| |||||||    
T  33689415 atcatacctatatctaatctttgttaacattgctaatgactttgcagaccctaa 33689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 8158457 - 8158520
Alignment:
Q  64 tgcaatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaa 127  Q
    ||||||||||||||||||||||  || |||||| ||||||| || ||||||| |||||||||||    
T  8158457 tgcaatcatacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaacctaa 8158520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 24787219 - 24787157
Alignment:
Q  67 aatcatacttatatctaatccttc--ttaacattgctaatgactttgcaaaccctaaacctaa 127  Q
    |||||||||||||||||||| |    ||||||||||||||||||||||||| |||||| ||||    
T  24787219 aatcatacttatatctaatcttataattaacattgctaatgactttgcaaatcctaaaactaa 24787157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 7473610 - 7473473
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  | |||||||||||||    
T  7473610 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 7473511  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||||||| ||  |||||||||||||||||||||||    
T  7473510 tcatttagctaagcatgcatctcatcctttgatctaat 7473473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 22009649 - 22009512
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |  | |||||||||||||    
T  22009649 atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 22009550  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  |||||||||||||||||||||||    
T  22009549 tcatttggctaagcatgcatctcatcctttgatctaat 22009512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 9043799 - 9043939
Alignment:
Q  65 gcaatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatc 164  Q
    |||||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  | ||||||||||    
T  9043799 gcaatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatc 9043898  T
Q  165 tcatcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    ||||||||| ||| ||  |||||||||||||||||||||||    
T  9043899 tcatcatttggctaagcatgcatctcatcctttgatctaat 9043939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 30442667 - 30442531
Alignment:
Q  69 tcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctcat 168  Q
    |||| ||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  | ||||||||||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcat 30442568  T
Q  169 catttagctcagagtgcatctcatcctttgatctaat 205  Q
    ||||| ||| ||  |||||||||||||||||||||||    
T  30442567 catttggctaagcatgcatctcatcctttgatctaat 30442531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 22004571 - 22004408
Alignment:
Q  74 cttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctcatcattt 173  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||||||||| || |||| ||| ||||  | | |  | |||||||||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaat-caaggtggtccgttggatctcatcattt 22004473  T
Q  174 agctcagagtgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcctgat 238  Q
     ||||||  | ||| ||||||||||||||||| | |||||||| ||| |||||||||||||||||    
T  22004472 ggctcagcattcatatcatcctttgatctaatgtcacttcaaagtttcatttccccatgcctgat 22004408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 19085498 - 19085422
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 144  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19085498 atcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 19085422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 26841074 - 26840988
Alignment:
Q  79 atctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatct 165  Q
    |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |  |||||||||||||    
T  26841074 atctaatctttgttaacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatct 26840988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 30463172 - 30463113
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgc-aaaccctaaaccta 126  Q
    ||||||||||||||||||| || |||||| ||||||| || |||| ||||||||||||||    
T  30463172 atcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaaccta 30463113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 26851981 - 26852009
Alignment:
Q  132 ttttggctccaaaacgatgctgaccgttg 160  Q
    |||||||||||||||||||||||||||||    
T  26851981 ttttggctccaaaacgatgctgaccgttg 26852009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 205
Target Start/End: Complemental strand, 23349102 - 23348964
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  | ||||||||||||    
T  23349102 aatcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctc 23349003  T
Q  167 atcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    ||||||| ||| ||  |||||||||||||||||||||||    
T  23349002 atcatttggctaagcatgcatctcatcctttgatctaat 23348964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 12741699 - 12741825
Alignment:
Q  79 atctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctcatcatttagctc 178  Q
    |||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  | ||||||||||||||||||| |||     
T  12741699 atctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggcta 12741798  T
Q  179 agagtgcatctcatcctttgatctaat 205  Q
    ||  |||||||||||||||||||||||    
T  12741799 agcatgcatctcatcctttgatctaat 12741825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 18355434 - 18355297
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||| ||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |  |  ||||||||||||    
T  18355434 atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttggctccaaaacaagggaggtcgttggatctca 18355335  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  ||||||||||||||| |||||||    
T  18355334 tcatttggctaagcatgcatctcatcctttaatctaat 18355297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 10329013 - 10328875
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||| ||||||| || ||||| | |  | |||||||||||||    
T  10329013 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaacctaaattgttttggttctaaaacaagggaggccgttggatctca 10328914  T
Q  168 tcatttagctcagagtgcatctcatcc-tttgatctaat 205  Q
    |||||| ||| ||  |||||||||||| |||||||||||    
T  10328913 tcatttggctaagcatgcatctcatccttttgatctaat 10328875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 1616037 - 1615895
Alignment:
Q  66 caatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatct 165  Q
    ||||||| |||||||| |||| || ||||||||| ||||||||||| || |  |||| |||||||||||| |||||||| | | |  || |||||||||     
T  1616037 caatcatccttatatccaatctttgttaacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaa-caagggagatcgttggatcg 1615939  T
Q  166 catcatttagctcagagtgcatctcatcctttgatctaatttga 209  Q
    |||||||| ||| ||  |||||||||||||||||||||||||||    
T  1615938 catcatttggctaagcatgcatctcatcctttgatctaatttga 1615895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 24454516 - 24454666
Alignment:
Q  69 tcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctcat 168  Q
    |||||||||||||||||| |  |||||||||||||   | ||||||| |||||||||||||  ||| ||| ||||| | | |  | ||||||||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaa-caaggagggccgttggatctcat 24454614  T
Q  169 catttagctcagagtgcatctcatcctttgatctaatttgacttcaaacttt 220  Q
    ||||| |||     | ||||||||||||||||||||| ||||||||||||||    
T  24454615 catttggcttgacattcatctcatcctttgatctaatctgacttcaaacttt 24454666  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 29863482 - 29863345
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |  | |||||||||||||    
T  29863482 atcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctca 29863383  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  |||||||||||||||||||||||    
T  29863382 tcatttggctgagcatgcatctcatcctttgatctaat 29863345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 12506435 - 12506497
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaat 129  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  12506435 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 12506497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 24260243 - 24260294
Alignment:
Q  91 ttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 143  Q
    ||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  24260243 ttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 24260294  T

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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 33045545 - 33045415
Alignment:
Q  75 ttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctcatcattta 174  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |  | |||||||||||||||||||     
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttg 33045446  T
Q  175 gctcagagtgcatctcatcctttgatctaat 205  Q
    | | ||  |||||||||||||||||||||||    
T  33045445 gttaagcatgcatctcatcctttgatctaat 33045415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 234
Target Start/End: Original strand, 8976411 - 8976570
Alignment:
Q  75 ttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctcatcattta 174  Q
    |||||||||||| || |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||  | |  |||||||||||||||| |||||    
T  8976411 ttatatctaatctttgttaatattgctaatgactttacaaactctaaacctaaatggttttggctccaaaataagggagaccgttggatctcattattta 8976510  T
Q  175 gctcagagtgcatctcatcctttgatctaatttgacttcaaacttttatttccccatgcc 234  Q
    ||| |   ||||||||||||||||||||||| |||   || ||||| |||||||||||||    
T  8976511 gctaaacatgcatctcatcctttgatctaatctgatcgcagactttcatttccccatgcc 8976570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 197
Target Start/End: Original strand, 10092512 - 10092641
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | |  | |||||||||||||    
T  10092512 atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctca 10092611  T
Q  168 tcatttagctcagagtgcatctcatccttt 197  Q
    |||||| ||| ||  |||||||||| ||||    
T  10092612 tcatttggctaagcatgcatctcattcttt 10092641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 3065697 - 3065802
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctc 166  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |  ||||||||||||||    
T  3065697 aatcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaacctaaatggttttggctccaaa-caagggagaccgttggatctc 3065795  T
Q  167 atcattt 173  Q
    |||||||    
T  3065796 atcattt 3065802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 16246701 - 16246778
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 144  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16246701 aatcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatcctaaatggttttggctccaaa 16246778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 30908483 - 30908414
Alignment:
Q  75 ttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 144  Q
    |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaatctaaatggttttggctccaaa 30908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 4660295 - 4660222
Alignment:
Q  69 tcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 143  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 4660222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 11755 - 11618
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |  | |||||||||||||    
T  11755 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctca 11656  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| | | ||  |||||||||||||||||| ||||    
T  11655 tcatttggttaagcatgcatctcatcctttgatttaat 11618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 654 - 791
Alignment:
Q  68 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctgaccgttggatctca 167  Q
    ||||||||||||||| ||| || ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||  | |  | |||||||||||||    
T  654 atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaacctaaatggttttgactccaaaataagggaggccgttggatctca 753  T
Q  168 tcatttagctcagagtgcatctcatcctttgatctaat 205  Q
    |||||| ||| ||  |||||||||||||||||||||||    
T  754 tcatttggctaagcatgcatctcatcctttgatctaat 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12663111 - 12663043
Alignment:
Q  1 tgggctaagtcgatgtcgatatgacgccttattcatagcaaagtcccaactgatgaaaatctatgcaat 69  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12663111 tgggctaagtcgatgttgatatgacgccttattcatagcaaagtcccaactgatgaaaatctatacaat 12663043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 50990911 - 50990983
Alignment:
Q  72 tacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaa 144  Q
    ||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaacctaaatggttttggctccaaa 50990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 25223218 - 25223266
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaa 115  Q
    |||||||||||||||||||| || |||||| ||||||| || |||||||    
T  25223218 aatcatacttatatctaatctttgttaacaatgctaattaccttgcaaa 25223266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 14042 - 13980
Alignment:
Q  67 aatcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaat 129  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  14042 aatcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaacctaaat 13980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 7585 - 7520
Alignment:
Q  77 atatctaatccttcttaacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaa 143  Q
    |||| ||||| || ||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  7585 atatataatctttgttaacattgctaatgactttgcaaaccctaaccctaaa-gtttttggctccaa 7520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 43794 - 43822
Alignment:
Q  132 ttttggctccaaaacgatgctgaccgttg 160  Q
    |||||||||||||||||||||||||||||    
T  43794 ttttggctccaaaacgatgctgaccgttg 43822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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