View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8961_low_63 (Length: 241)

Name: NF8961_low_63
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8961_low_63
NF8961_low_63
[»] chr4 (13 HSPs)
chr4 (1-231)||(4732948-4733179)
chr4 (7-86)||(33519228-33519307)
chr4 (9-92)||(23353818-23353901)
chr4 (7-85)||(31859739-31859817)
chr4 (7-75)||(17187371-17187439)
chr4 (7-134)||(21077431-21077559)
chr4 (33-101)||(26159979-26160045)
chr4 (7-58)||(5676398-5676449)
chr4 (23-86)||(29437675-29437738)
chr4 (9-79)||(10576653-10576723)
chr4 (23-84)||(7024058-7024119)
chr4 (7-60)||(12111191-12111244)
chr4 (7-75)||(46647393-46647461)
[»] chr2 (14 HSPs)
chr2 (7-117)||(18818900-18819011)
chr2 (7-86)||(31274154-31274233)
chr2 (37-101)||(17414985-17415050)
chr2 (7-82)||(18236144-18236219)
chr2 (11-55)||(21505007-21505051)
chr2 (23-116)||(17862624-17862719)
chr2 (23-142)||(24047597-24047716)
chr2 (7-53)||(31262195-31262241)
chr2 (7-63)||(22525680-22525736)
chr2 (7-58)||(16593616-16593667)
chr2 (11-84)||(27417102-27417175)
chr2 (23-146)||(39730661-39730786)
chr2 (42-90)||(12363402-12363450)
chr2 (30-86)||(24434840-24434896)
[»] chr8 (15 HSPs)
chr8 (7-92)||(27097633-27097718)
chr8 (12-117)||(5153961-5154068)
chr8 (20-84)||(32239499-32239563)
chr8 (7-93)||(6888023-6888109)
chr8 (7-55)||(5570008-5570056)
chr8 (7-58)||(16052142-16052193)
chr8 (7-74)||(28291950-28292017)
chr8 (7-111)||(29291968-29292074)
chr8 (7-60)||(13081798-13081851)
chr8 (7-118)||(14424616-14424729)
chr8 (19-82)||(30543972-30544035)
chr8 (7-84)||(24120422-24120499)
chr8 (42-86)||(12774681-12774725)
chr8 (7-79)||(30850944-30851016)
chr8 (14-82)||(31436675-31436742)
[»] chr6 (10 HSPs)
chr6 (7-117)||(26499652-26499763)
chr6 (7-129)||(9942942-9943066)
chr6 (37-86)||(16387092-16387141)
chr6 (7-58)||(15575122-15575173)
chr6 (7-43)||(24618081-24618117)
chr6 (7-87)||(26512615-26512695)
chr6 (7-87)||(26517731-26517811)
chr6 (7-58)||(17860314-17860365)
chr6 (10-50)||(23418983-23419023)
chr6 (7-75)||(32930294-32930361)
[»] chr1 (14 HSPs)
chr1 (9-88)||(26102257-26102336)
chr1 (23-86)||(23505970-23506033)
chr1 (7-96)||(19257632-19257722)
chr1 (8-101)||(52271067-52271160)
chr1 (7-95)||(25126678-25126766)
chr1 (7-58)||(11769859-11769910)
chr1 (7-58)||(25373944-25373995)
chr1 (7-60)||(25494352-25494405)
chr1 (19-84)||(25665609-25665674)
chr1 (7-92)||(26854151-26854236)
chr1 (7-58)||(30675682-30675733)
chr1 (23-92)||(15850860-15850929)
chr1 (7-92)||(27461012-27461097)
chr1 (23-75)||(21548862-21548914)
[»] scaffold0011 (1 HSPs)
scaffold0011 (7-84)||(228026-228103)
[»] chr7 (10 HSPs)
chr7 (7-115)||(8308843-8308952)
chr7 (23-84)||(1074667-1074728)
chr7 (23-84)||(18496779-18496840)
chr7 (7-58)||(29544718-29544769)
chr7 (6-58)||(7372434-7372485)
chr7 (7-58)||(20017151-20017202)
chr7 (7-101)||(25706352-25706446)
chr7 (6-63)||(4828985-4829042)
chr7 (7-60)||(21545690-21545743)
chr7 (23-75)||(24596852-24596904)
[»] chr5 (12 HSPs)
chr5 (7-136)||(19763671-19763802)
chr5 (9-97)||(17695288-17695377)
chr5 (7-92)||(18178300-18178384)
chr5 (7-65)||(7742728-7742786)
chr5 (7-58)||(11274195-11274246)
chr5 (7-58)||(16622542-16622592)
chr5 (13-92)||(26070678-26070757)
chr5 (8-58)||(26329935-26329985)
chr5 (7-60)||(16634245-16634298)
chr5 (23-67)||(18872908-18872952)
chr5 (7-58)||(30072314-30072365)
chr5 (7-60)||(18452675-18452728)
[»] chr3 (10 HSPs)
chr3 (7-75)||(19542972-19543040)
chr3 (12-79)||(21828977-21829044)
chr3 (8-84)||(18474369-18474445)
chr3 (7-66)||(19219068-19219127)
chr3 (7-58)||(25883301-25883352)
chr3 (23-85)||(33577942-33578004)
chr3 (7-68)||(5632398-5632459)
chr3 (23-60)||(19263767-19263804)
chr3 (23-92)||(21653561-21653630)
chr3 (7-83)||(26418918-26418994)
[»] scaffold0650 (1 HSPs)
scaffold0650 (7-59)||(5634-5686)
[»] scaffold0282 (1 HSPs)
scaffold0282 (10-58)||(22479-22527)
[»] scaffold1149 (1 HSPs)
scaffold1149 (23-84)||(2001-2062)
[»] scaffold0190 (1 HSPs)
scaffold0190 (7-92)||(11530-11614)
[»] scaffold0171 (1 HSPs)
scaffold0171 (7-59)||(21596-21648)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4732948 - 4733179
Alignment:
Q  1 tttgaatcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  4732948 tttgaatcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaaatttcaaggcatttcaagacagaagaacgctcaaaaaggaacaaa 4733047  T
Q  101 a-ctgtaaaatttgcacacgggctactgcctgatgtgctcttgcgcttagccatgttcccttgcgcatgaggcagccctaacttgtggtaagaaactact 199  Q
    | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  4733048 aactgtaaaatttgcacacgggctactgcctgatgtgcccttgcacttagccatgcgcccttgcgcatgaggcagccctaacttgtggtaagaaactact 4733147  T
Q  200 atttacttttcttaacacctaaataatgatgt 231  Q
    ||||||||||||||||||||||||||||||||    
T  4733148 atttacttttcttaacacctaaataatgatgt 4733179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 33519228 - 33519307
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 86  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||    
T  33519228 tcttagaaggtctttgaagacaatacaagttgaagaaaattcatttcaaattccaaggcatttccagacagaagaacgct 33519307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 23353818 - 23353901
Alignment:
Q  9 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||||| |||| |||| ||| |||||| ||||||| ||||    
T  23353818 ttagaaggtcttttaagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaaaacagaaaaacgctcgaaaa 23353901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 31859817 - 31859739
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgc 85  Q
    ||||||||||| ||| ||||||||||||  ||||||||||| |||||||||| |||| ||||||||||| |||||||||    
T  31859817 tcttagaaggtatttgaagacaatacaaagtgaagaaaatttatttcaagttccaaggcatttcaagacggaagaacgc 31859739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 17187371 - 17187439
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 75  Q
    ||||||||| | ||| ||||||||||||  | |||||||||||||||||||||||||||||| ||||||    
T  17187371 tcttagaagttatttgaagacaatacaaagtaaagaaaattcatttcaagtttcaagacattgcaagac 17187439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 21077431 - 21077559
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggac-aaaactgt 105  Q
    |||||||||||  |  |||||||||||| ||||| ||||||||||||||||| |||| ||||  ||||  ||||||  |||||||||| || |||||||     
T  21077431 tcttagaaggtaatcgaagacaatacaaattgaataaaattcatttcaagttccaaggcattgaaagatggaagaatactcaaaaaggtacgaaaactgc 21077530  T
Q  106 aaaatttgcacacgggctactgcctgatg 134  Q
    |||||| ||||| | ||| |||| |||||    
T  21077531 aaaattcgcacaagagctgctgcttgatg 21077559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 26159979 - 26160045
Alignment:
Q  33 aagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaaa 101  Q
    |||||||||||||||||||||||||| ||||  |||||||||| |||||||||||  ||||||||||||    
T  26159979 aagttgaagaaaattcatttcaagttccaag-gatttcaagacggaagaacgctc-gaaagggacaaaa 26160045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 5676398 - 5676449
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  5676398 tcttagaaggtttttgaagacaatacaagatgaagaaaattcatttcgagtt 5676449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 29437675 - 29437738
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 86  Q
    ||||||||||||  |||||||| ||||||| ||||| |||| |||  |||||||||||||||||    
T  29437675 aagacaatacaaagtgaagaaacttcatttgaagttccaaggcatcgcaagacagaagaacgct 29437738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 10576653 - 10576723
Alignment:
Q  9 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaa 79  Q
    ||||||||| ||| ||| ||| |||||||   ||||||||||| ||||||| ||| |||||||||||||||    
T  10576653 ttagaaggtttttgaaggcaacacaagttagggaaaattcattccaagttttaagtcatttcaagacagaa 10576723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 7024119 - 7024058
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    |||| |||||||| |||||||||||||| | |||||  |||||||||||| || ||||||||    
T  7024119 aagataatacaagatgaagaaaattcatataaagttctaagacatttcaacacggaagaacg 7024058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 12111244 - 12111191
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 60  Q
    ||||| ||||| ||| |||| |||||||  ||||||||||||||||||||||||    
T  12111244 tcttataaggttttttaagataatacaaagtgaagaaaattcatttcaagtttc 12111191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 46647393 - 46647461
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 75  Q
    ||||| ||||| |||||||| |||||||||||  ||||||||||   || || ||||||||||||||||    
T  46647393 tcttaaaaggtttttaaagataatacaagttggggaaaattcatccaaaattacaagacatttcaagac 46647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 18818900 - 18819011
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaaggga-caaaactgt 105  Q
    ||||||||||||||| ||||||||||||  ||||||||||||| |||||||| ||||||||| |||||| |||||| |||||||||||||  |||||||     
T  18818900 tcttagaaggtctttgaagacaatacaaagtgaagaaaattcaattcaagttccaagacattgcaagacggaagaatgctcaaaaagggatgaaaactgc 18818999  T
Q  106 aaaatttgcaca 117  Q
    |||||| |||||    
T  18819000 aaaattcgcaca 18819011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 31274154 - 31274233
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 86  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||  ||||||| | || |||||||||||    
T  31274154 tcttagaaggtctttgaagacaatataagttgaagaaaattcattccaagtttcctgacattttaggatagaagaacgct 31274233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 17415050 - 17414985
Alignment:
Q  37 tgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctca-aaaagggacaaaa 101  Q
    ||||||||||||||||||||||  |||||||| |||||| |||||||||||| |||||||||||||    
T  17415050 tgaagaaaattcatttcaagttctaagacattgcaagacggaagaacgctcaaaaaagggacaaaa 17414985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 18236219 - 18236144
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaa 82  Q
    |||||||||||  || ||||||||||||| ||||||||||||||||||||||  ||| ||||| ||||| ||||||    
T  18236219 tcttagaaggttgttgaagacaatacaagatgaagaaaattcatttcaagttcaaaggcatttaaagacggaagaa 18236144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 21505051 - 21505007
Alignment:
Q  11 agaaggtctttaaagacaatacaagttgaagaaaattcatttcaa 55  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||    
T  21505051 agaaggtttttgaagacaatacaagttgaagaaaattcatttcaa 21505007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 17862624 - 17862719
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggac-aaaactgtaaaatttgcac 116  Q
    |||||| |||||||||  ||||||||||  |||||| |||||||||||| | | ||| ||||||| |||||||||| ||||||| |||||||||||    
T  17862624 aagacagtacaagttggggaaaattcatcccaagttccaagacatttcatggcggaaaaacgctcgaaaaagggacaaaaactgcaaaatttgcac 17862719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 24047597 - 24047716
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaaactgtaaaatttgcacacgggc 122  Q
    |||||||||||||||   |||||||||   |||||| |||| ||||||||||  ||| ||||||| |||| ||||||||||| |||||| ||||  ||||    
T  24047597 aagacaatacaagttagggaaaattcaacccaagttccaaggcatttcaagatggaaaaacgctcgaaaaaggacaaaactgcaaaattcgcacctgggc 24047696  T
Q  123 tactgcctgatgtgctcttg 142  Q
    || ||||  ||| |||||||    
T  24047697 tattgccacatgcgctcttg 24047716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 31262195 - 31262241
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttc 53  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||    
T  31262195 tcttagtaggtctttgaagacaatataagttgaagaaaattcatttc 31262241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 22525736 - 22525680
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaag 63  Q
    ||||||||||| ||| ||||||| ||||  ||||||||||| |||||||||||||||    
T  22525736 tcttagaaggtatttgaagacaacacaaagtgaagaaaatttatttcaagtttcaag 22525680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 16593667 - 16593616
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    |||||||||||  || ||||||||||||  ||||||||||||||||||||||    
T  16593667 tcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagtt 16593616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 27417175 - 27417102
Alignment:
Q  11 agaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    ||||||| ||| || |||||||||  |||||||||||||||||||||| ||||   |||| |||| ||||||||    
T  27417175 agaaggtttttgaaaacaatacaaagtgaagaaaattcatttcaagttccaaggagtttccagacggaagaacg 27417102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 39730661 - 39730786
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaag-ggacaaa-actgtaaaatttgcacacgg 120  Q
    |||||||||  |||||  ||||||||||  |||||| |||| ||||||||||| |||||||||| |||||  |||| || | || ||||||||||  | |    
T  39730661 aagacaataagagttggggaaaattcatcccaagttccaaggcatttcaagacggaagaacgctaaaaaaaaggacgaacattgcaaaatttgcatccag 39730760  T
Q  121 gctactgcctgatgtgctcttgcgct 146  Q
    |||||||||| |||||| | ||||||    
T  39730761 gctactgcctcatgtgcccatgcgct 39730786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 12363402 - 12363450
Alignment:
Q  42 aaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaa 90  Q
    |||| |||| ||||||| ||| |||||||||||| ||||||||||||||    
T  12363402 aaaaatcatctcaagttccaacacatttcaagacggaagaacgctcaaa 12363450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 24434840 - 24434896
Alignment:
Q  30 tacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 86  Q
    |||||||||||| |||||||| |||| || |||| ||||||||||  ||||||||||    
T  24434840 tacaagttgaaggaaattcatatcaaattccaaggcatttcaagagggaagaacgct 24434896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 27097718 - 27097633
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||| |||||| ||||||| ||||||||    
T  27097718 tcttagaaggtctttgaagacaatacaagttgaagaaaattcaattcaagttccaaggcattgcaagacggaagaacactcaaaaa 27097633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 5153961 - 5154068
Alignment:
Q  12 gaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggac-aaaactgtaaaa 109  Q
    |||||| ||| ||||||||| ||  |||| ||||||||||||||||| ||||||||| |||||| |||||| |||| |||||||||| ||||||| ||||    
T  5153961 gaaggtttttgaagacaatataacatgaataaaattcatttcaagttccaagacattgcaagacggaagaatgctcgaaaaagggacgaaaactgcaaaa 5154060  T
Q  110 tttgcaca 117  Q
    ||| ||||    
T  5154061 tttacaca 5154068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 32239499 - 32239563
Alignment:
Q  20 ttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    |||||||||||| ||  ||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  32239499 ttaaagacaataaaaagtgaagaaaattcatttcaagtttcaaggcattgcaagacagaaaaacg 32239563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 6888109 - 6888023
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaag 93  Q
    ||||| || |||||| |||||||||||||||||||||||| | ||||||||  |||| ||  ||||||| ||||||| |||||||||    
T  6888109 tcttaaaatgtctttgaagacaatacaagttgaagaaaatccgtttcaagtgccaagccacgtcaagacggaagaacactcaaaaag 6888023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 5570056 - 5570008
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaa 55  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  5570056 tcttagaagctttttaaagacaatacaagatgaagaaaattcatttcaa 5570008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 16052193 - 16052142
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  16052193 tcttagaaggtttttgaagacaatacaaaatgaagaaaattcatttcaagtt 16052142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 28292017 - 28291950
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaaga 74  Q
    ||||||||||||||| ||||||||||||  ||||||||||  |||||||||| |||| |||| |||||    
T  28292017 tcttagaaggtctttgaagacaatacaaaatgaagaaaataaatttcaagttccaagccattgcaaga 28291950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 29291968 - 29292074
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggac-aaaactg 104  Q
    ||||||||||||||| ||||||| | ||  |||| |||||||||||||| || |||  |||| |||||| ||||||||| | |||||||||| |||| ||    
T  29291968 tcttagaaggtctttgaagacaacagaaagtgaaaaaaattcatttcaaattccaattcattgcaagacggaagaacgcacgaaaaagggacgaaaattg 29292067  T
Q  105 taaaatt 111  Q
    |||||||    
T  29292068 taaaatt 29292074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 13081851 - 13081798
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 60  Q
    |||||||||||  || ||||||||||||  ||||||||||||||||||||||||    
T  13081851 tcttagaaggttgttgaagacaatacaaaatgaagaaaattcatttcaagtttc 13081798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 14424729 - 14424616
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggacaaaa-ctg 104  Q
    ||||||||||| ||| || ||||| |||  ||||||||||||||||  ||||  |||| ||| |||||| ||||||| ||| ||||||||||||||  ||    
T  14424729 tcttagaaggtttttgaacacaattcaatgtgaagaaaattcatttatagttctaagatattgcaagacggaagaactctcaaaaaagggacaaaagatg 14424630  T
Q  105 taaaatttgcacac 118  Q
     |||||||||||||    
T  14424629 caaaatttgcacac 14424616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 30543972 - 30544035
Alignment:
Q  19 tttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaa 82  Q
    ||||||||||||| ||  |||||||||||||||||||||| |||| |||| |||| | ||||||    
T  30543972 tttaaagacaatataaagtgaagaaaattcatttcaagttccaaggcattgcaaggcggaagaa 30544035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 24120422 - 24120499
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    ||||||||||| ||  |||| |||| ||| |||||||||||||||||||||| | ||  ||||| |||| ||||||||    
T  24120422 tcttagaaggttttcgaagataataaaagatgaagaaaattcatttcaagttcctaggaatttccagacggaagaacg 24120499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 12774725 - 12774681
Alignment:
Q  42 aaaattcatttcaagtttcaagacatttcaagacagaagaacgct 86  Q
    ||||||||| |||| ||||||| ||||||||||| ||||||||||    
T  12774725 aaaattcatctcaaatttcaaggcatttcaagacggaagaacgct 12774681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 30851016 - 30850944
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaa 79  Q
    |||||||| |||||| || | |||||||  ||||||||||| |||||||||| |||| |||| ||||| ||||    
T  30851016 tcttagaatgtctttgaatataatacaaagtgaagaaaattaatttcaagttccaagtcattgcaagatagaa 30850944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 31436675 - 31436742
Alignment:
Q  14 aggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaa 82  Q
    |||| ||| ||||||||||||  |||| |||||| |||||||||| |||| |||| |||||||||||||    
T  31436675 aggtatttgaagacaatacaaagtgaaaaaaatt-atttcaagttccaaggcattgcaagacagaagaa 31436742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 26499763 - 26499652
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggac-aaaactgt 105  Q
    ||||||||||| ||| ||||||||||||  | ||||||||||||||||||||||||| |||| |||||| ||| ||||||| |||| | || |||||||     
T  26499763 tcttagaaggtttttgaagacaatacaaagtaaagaaaattcatttcaagtttcaaggcattgcaagacggaacaacgctcgaaaaagaacgaaaactgc 26499664  T
Q  106 aaaatttgcaca 117  Q
    ||||||||||||    
T  26499663 aaaatttgcaca 26499652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 9943066 - 9942942
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac-agaagaacgctcaaaaagggac-aaaactg 104  Q
    ||||| ||||| ||||||||||||  ||||||  |||||||||| ||||||| |||||||||||||||| |||| || |||| ||||||||| |||||||    
T  9943066 tcttataaggtttttaaagacaatgtaagttggggaaaattcatctcaagttccaagacatttcaagacaagaaaaatgctcgaaaagggacgaaaactg 9942967  T
Q  105 taaaatttgcacacgggctactgcc 129  Q
     ||||||||||  | ||||||||||    
T  9942966 caaaatttgcatccaggctactgcc 9942942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 16387141 - 16387092
Alignment:
Q  37 tgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 86  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  16387141 tgaagaaaattcgtttcaagtttcaaggtatttcaagacagaagaacgct 16387092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 15575122 - 15575173
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    |||||||||||| || ||||||||||||  ||||||||||||||||||||||    
T  15575122 tcttagaaggtcgttgaagacaatacaaagtgaagaaaattcatttcaagtt 15575173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 24618081 - 24618117
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaa 43  Q
    ||||||||| |||||||||||||||||||||||||||    
T  24618081 tcttagaagatctttaaagacaatacaagttgaagaa 24618117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 26512695 - 26512615
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc 87  Q
    ||||| ||||||| | || |||||||||| |||  ||||||||| |||||||||||| ||||||||||  ||| |||||||    
T  26512695 tcttaaaaggtctgtgaacacaatacaagatgataaaaattcatctcaagtttcaaggcatttcaagaaggaaaaacgctc 26512615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 26517811 - 26517731
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc 87  Q
    ||||| ||||||| | || |||||||||| |||  ||||||||| |||||||||||| ||||||||||  ||| |||||||    
T  26517811 tcttaaaaggtctgtgaacacaatacaagatgataaaaattcatctcaagtttcaaggcatttcaagaaggaaaaacgctc 26517731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 17860365 - 17860314
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||||||||| |||  |||||||||||  ||||||||||||||||||||||    
T  17860365 tcttagaaggtttttgtagacaatacaaagtgaagaaaattcatttcaagtt 17860314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 23419023 - 23418983
Alignment:
Q  10 tagaaggtctttaaagacaatacaagttgaagaaaattcat 50  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  23419023 tagaaggtttttgaagtcaatacaagttgaagaaaattcat 23418983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 32930361 - 32930294
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 75  Q
    |||| |||||| ||||||||||||||||||||  ||||||| ||  |||||| |||| |||||||||||    
T  32930361 tcttggaaggtttttaaagacaatacaagttg-ggaaaattaatcacaagttccaaggcatttcaagac 32930294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 26102257 - 26102336
Alignment:
Q  9 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctca 88  Q
    ||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  26102257 ttagaaggtttttgaagacaatacaagttgaggaaaattcatctcaagtttcaaggaatttcaagactgaagaacgctca 26102336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 23505970 - 23506033
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgct 86  Q
    ||||||||||||  |||||||||||||||||||||| ||||||| | |||||||||| ||||||    
T  23505970 aagacaatacaaagtgaagaaaattcatttcaagttccaagacaatgcaagacagaataacgct 23506033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 19257722 - 19257632
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaaggga 96  Q
    ||||||||||||||| ||||||||||||  ||||||||||| ||||||| || |||| |||| |||||| ||| || |||| |||||||||    
T  19257722 tcttagaaggtctttgaagacaatacaaagtgaagaaaatttatttcaatttccaaggcattgcaagacggaaaaatgctcgaaaaaggga 19257632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 52271160 - 52271067
Alignment:
Q  8 cttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaaa 101  Q
    |||||||||| ||| ||||||||||||  ||||||||||||||||||| || ||||  ||| |||||| ||||||||  | ||||||| |||||    
T  52271160 cttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaaattccaaggaattgcaagacggaagaacgggcgaaaagggtcaaaa 52271067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 25126678 - 25126766
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaaggg 95  Q
    ||||||||  ||||| || |||||||||  |||||||||||||||||||||| |||| |||| |||||| |||  ||||| ||||||||    
T  25126678 tcttagaaaatctttgaatacaatacaaaatgaagaaaattcatttcaagttccaaggcattgcaagacggaaacacgctaaaaaaggg 25126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 11769910 - 11769859
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  11769910 tcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagtt 11769859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 25373944 - 25373995
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    |||||||||||  || ||||||||||||| ||||||||||||||||||||||    
T  25373944 tcttagaaggttgtttaagacaatacaagatgaagaaaattcatttcaagtt 25373995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 25494405 - 25494352
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 60  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||| ||||    
T  25494405 tcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaaatttc 25494352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 25665674 - 25665609
Alignment:
Q  19 tttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    ||||||||||||||||  ||||||||| |||||| ||||| |||| |||| |||||| ||||||||    
T  25665674 tttaaagacaatacaaagtgaagaaaaatcatttgaagttccaaggcattgcaagacggaagaacg 25665609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 26854236 - 26854151
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    ||||||||| | ||| ||||||||||||  |||||||||||||||| ||||| |||| |||| |||||  ||||||| || |||||    
T  26854236 tcttagaagatatttgaagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgcaagatggaagaacactgaaaaa 26854151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 30675682 - 30675733
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||||||||| ||| |||| |||||||  ||||||||||||||||||||||    
T  30675682 tcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagtt 30675733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 15850929 - 15850860
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    |||||||||||||||  |||||||||||  ||| ||||||| ||||| ||||  ||||||||||| ||||    
T  15850929 aagacaatacaagtttgagaaaattcatcccaaatttcaaggcattttaagaaggaagaacgctcgaaaa 15850860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 27461097 - 27461012
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    ||||| ||||| ||| |||||||||||||||   ||| ||||||  |||||| |||| |||||||||||  |||||||||| ||||    
T  27461097 tcttaaaaggtttttgaagacaatacaagtttgggaatattcatcacaagttccaaggcatttcaagacgaaagaacgctcgaaaa 27461012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 21548862 - 21548914
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 75  Q
    |||| ||||||||||||| ||||||||||| ||||| |||| |||| ||||||    
T  21548862 aagataatacaagttgaaaaaaattcatttgaagttccaaggcattacaagac 21548914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 228103 - 228026
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    ||||||||||| ||| ||||||||||||  |||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  228103 tcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttccaagacattgcaagacggaagaacg 228026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 8308952 - 8308843
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaaggga-caaaactgt 105  Q
    ||||||||||||||| ||||||||||||  | ||||| |||||| ||||||| ||||  ||| |||||| ||||||||||||||||||||  |||||||     
T  8308952 tcttagaaggtctttgaagacaatacaaaataaagaagattcatatcaagttccaaggtattgcaagacggaagaacgctcaaaaagggaggaaaactgc 8308853  T
Q  106 aaaatttgca 115  Q
    ||||||||||    
T  8308852 aaaatttgca 8308843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 1074667 - 1074728
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    ||||||||||||| ||||||||| | |||||||||| |||||||||||||||| ||||||||    
T  1074667 aagacaatacaagatgaagaaaagtaatttcaagttccaagacatttcaagacggaagaacg 1074728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 18496779 - 18496840
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    |||| |||||||| |||||||||||||||||||||| |||| |||||||||||  |||||||    
T  18496779 aagaaaatacaagatgaagaaaattcatttcaagttccaaggcatttcaagacgtaagaacg 18496840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 29544718 - 29544769
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  29544718 tcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagtt 29544769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 7372485 - 7372434
Alignment:
Q  6 atcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    |||||||||| | ||||||||||||||||| ||||||||||| ||||||||||    
T  7372485 atcttagaagatttttaaagacaatacaag-tgaagaaaatttatttcaagtt 7372434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 20017151 - 20017202
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    |||||||||||  || ||||||||||||  ||||||||||||||||||||||    
T  20017151 tcttagaaggttcttgaagacaatacaaagtgaagaaaattcatttcaagtt 20017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 25706352 - 25706446
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaagggacaaaa 101  Q
    |||| |||||| ||| ||||||||| ||||||  ||||||||||  |||||| || |||| ||||| || ||||||||||| || | ||||||||    
T  25706352 tcttggaaggtttttgaagacaatataagttggggaaaattcatcccaagttccatgacaattcaatacggaagaacgctcgaagaaggacaaaa 25706446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 4828985 - 4829042
Alignment:
Q  6 atcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaag 63  Q
    |||||||||| | ||| ||||||||||||  |||||| ||||||||||||||| ||||    
T  4828985 atcttagaagttatttgaagacaatacaaagtgaagataattcatttcaagttccaag 4829042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 21545743 - 21545690
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 60  Q
    |||||||| || ||| ||||||||| ||  ||||||||||||||||||||||||    
T  21545743 tcttagaaagtatttgaagacaataaaaagtgaagaaaattcatttcaagtttc 21545690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 24596904 - 24596852
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 75  Q
    ||||||||||||  |||||||||||||||| ||||| |||| |||| ||||||    
T  24596904 aagacaatacaaagtgaagaaaattcatttgaagttccaaggcattgcaagac 24596852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 19763802 - 19763671
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggacaaaa-ctg 104  Q
    ||||||||||| ||| |||| |||||||  |||||||||||||||||||||| |||   |||  ||||  ||||||||||| ||||||||||||||  ||    
T  19763802 tcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttccaaaggattgaaagatggaagaacgctcgaaaaagggacaaaagttg 19763703  T
Q  105 taaaatttgcacacgggctactgcctgatgtg 136  Q
     |||||||||||| ||||| |||| |||||||    
T  19763702 caaaatttgcacatgggctgctgcttgatgtg 19763671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 17695377 - 17695288
Alignment:
Q  9 ttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctc-aaaaagggac 97  Q
    ||||||||| ||| ||||||||||||||||  ||||||||||   ||||| |||| ||||||||||| ||||||||||| ||||||||||    
T  17695377 ttagaaggtttttgaagacaatacaagttggggaaaattcatcctaagttccaaggcatttcaagaccgaagaacgctcgaaaaagggac 17695288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 18178300 - 18178384
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    |||| |||||||||| |||| ||||||| ||||| ||||||||| ||||||| |||| | ||||||||| ||||||||||||||||    
T  18178300 tcttggaaggtctttgaagataatacaaattgaataaaattcatctcaagttccaaggc-tttcaagacggaagaacgctcaaaaa 18178384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 7742786 - 7742728
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagac 65  Q
    ||||||||||||||| ||||||||||||  ||||||||| || ||||||||||||||||    
T  7742786 tcttagaaggtctttgaagacaatacaaagtgaagaaaaatcgtttcaagtttcaagac 7742728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 11274246 - 11274195
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||||||||||||| ||||||||||||| ||| |||| |||||||||||||    
T  11274246 tcttagaaggtctttgaagacaatacaagatgatgaaatttcatttcaagtt 11274195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 16622592 - 16622542
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||    
T  16622592 tcttagaaggt-tttgaagacaatacaaattgaagaaaattcatttcaagtt 16622542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 26070678 - 26070757
Alignment:
Q  13 aaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    ||||| ||| |||||||| ||||||  |||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||    
T  26070678 aaggtttttgaagacaatgcaagttagagaaaattcagttcaagttccaaggcatttcaagacggaagaaggctcgaaaa 26070757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 26329985 - 26329935
Alignment:
Q  8 cttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    |||||||||| ||| ||||||||||||  ||||||||||||||||||||||    
T  26329985 cttagaaggttttttaagacaatacaaagtgaagaaaattcatttcaagtt 26329935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 16634245 - 16634298
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 60  Q
    ||||||||||| ||| |||| |||||||| |||| |||||||||||||||||||    
T  16634245 tcttagaaggtttttgaagaaaatacaagatgaaaaaaattcatttcaagtttc 16634298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 18872952 - 18872908
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacat 67  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||    
T  18872952 aagacaatacaaattgaagaaaattcatttgaagttccaagacat 18872908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 30072314 - 30072365
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    ||||| ||||| ||||||||||||||||  |||||||| |||||||||||||    
T  30072314 tcttaaaaggtttttaaagacaatacaaagtgaagaaatttcatttcaagtt 30072365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 18452728 - 18452675
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttc 60  Q
    ||||| ||||| ||| || |||||||||  ||||||||||||||||||||||||    
T  18452728 tcttataaggttttttaaaacaatacaaagtgaagaaaattcatttcaagtttc 18452675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 19543040 - 19542972
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagac 75  Q
    ||||||||||| ||| ||||||||||||  |||||||||||||||||||||| |||| |||| ||||||    
T  19543040 tcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttccaaggcattgcaagac 19542972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 21829044 - 21828977
Alignment:
Q  12 gaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaa 79  Q
    |||||||||| ||||||||| ||||| ||||| |||||||| ||||| |||| |||||||||||||||    
T  21829044 gaaggtctttgaagacaatataagttaaagaatattcattttaagttccaaggcatttcaagacagaa 21828977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 18474369 - 18474445
Alignment:
Q  8 cttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    |||||||||| ||| ||||||||||||  |||||||||||||||||||||| |||  |||| ||||||  |||||||    
T  18474369 cttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttccaatgcattgcaagacgaaagaacg 18474445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 19219127 - 19219068
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagaca 66  Q
    ||||||||||| ||| ||||||||||||  |||| |||||||||||||| || |||||||    
T  19219127 tcttagaaggtttttgaagacaatacaaagtgaataaaattcatttcaaattccaagaca 19219068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 25883301 - 25883352
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    |||||||||||  || ||||||||||||  ||||||||||||||||||||||    
T  25883301 tcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagtt 25883352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 33577942 - 33578004
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgc 85  Q
    ||||||||||| ||||   |||| |||| |||||||||||||||||||||||  |||||||||    
T  33577942 aagacaatacatgttgggaaaaaatcatctcaagtttcaagacatttcaagatggaagaacgc 33578004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 5632459 - 5632398
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatt 68  Q
    ||||| ||||| ||| |||| |||| || ||||||||||||||||||||||| |||| ||||    
T  5632459 tcttataaggtatttgaagataataaaaattgaagaaaattcatttcaagttccaaggcatt 5632398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 19263804 - 19263767
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttc 60  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  19263804 aagacaatacaaagtgaagaaaattcatttcaagtttc 19263767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 21653561 - 21653630
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    ||||||||| ||||||   |||||||||  ||||||| ||| ||||||||||| ||||||||||| ||||    
T  21653561 aagacaataaaagttgggcaaaattcatcccaagttttaaggcatttcaagaccgaagaacgctcgaaaa 21653630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 26418918 - 26418994
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaac 83  Q
    ||||||||||| |||||||| ||||||| |||  ||||||||||  || ||| |||| ||||||||||  |||||||    
T  26418918 tcttagaaggtttttaaagaaaatacaaattggggaaaattcatcccatgttgcaaggcatttcaagatggaagaac 26418994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 5686 - 5634
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagttt 59  Q
    |||||||||||||||||||| |||||||  ||||||||||||| |||||||||    
T  5686 tcttagaaggtctttaaagaaaatacaaagtgaagaaaattcaattcaagttt 5634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 22527 - 22479
Alignment:
Q  10 tagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtt 58  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  22527 tagaaggttttttaagacaatacaaggtgaagaaaattcatttcaagtt 22479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 2001 - 2062
Alignment:
Q  23 aagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacg 84  Q
    ||||||||||||  | |||||||||||||||||||| ||| || || |||||||||||||||    
T  2001 aagacaatacaaagtaaagaaaattcatttcaagttccaatactttgcaagacagaagaacg 2062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 11614 - 11530
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagtttcaagacatttcaagacagaagaacgctcaaaaa 92  Q
    ||||| ||||| ||| ||||||||||||  |||||||||||||||||||| | |||| |||| |||||| || ||| |||||||||    
T  11614 tcttataaggtatttgaagacaatacaaagtgaagaaaattcatttcaag-tccaaggcattgcaagacggatgaatgctcaaaaa 11530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 21596 - 21648
Alignment:
Q  7 tcttagaaggtctttaaagacaatacaagttgaagaaaattcatttcaagttt 59  Q
    ||||||||||| ||||||||||||||||  | ||||| |||||||||||||||    
T  21596 tcttagaaggtttttaaagacaatacaaagttaagaatattcatttcaagttt 21648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University