View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8961_low_9 (Length: 590)
Name: NF8961_low_9
Description: NF8961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8961_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 14 - 575
Target Start/End: Original strand, 45078513 - 45079077
Alignment:
| Q |
14 |
atgtgtatggactgctttgatactattcttactggccatcttaggagcatgttccatcatcaaccggtttacccgaattgcgggagagttgtttggcatg |
113 |
Q |
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| T |
45078513 |
atgtgtatggactgctttgatactattcttactggccatcttaggagcatgttccatcatcaaccggtttacccgaattgcgggagagttgtttggcatg |
45078612 |
T |
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| Q |
114 |
ctcattgcaatgcttttcatgcagcaagctatcaaagtaagacaattatcaaagtttacattggtcatttatcatatctgttcta--------tttatct |
205 |
Q |
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| T |
45078613 |
ctcattgcaatgcttttcatgcagcaagctatcaaagtaagacaattatcaaagtttacattggtcatttatcatatctgttctatttatctatttatct |
45078712 |
T |
|
| Q |
206 |
acctatcaacaaaggtgttagttaatgcgtattcacatgatataccaaagttatttaccaacatattgtcgtcattgtgtcagggacttgtggatgagtt |
305 |
Q |
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| T |
45078713 |
acctatcaacaaaggtgttagttaatgcgtattcacatgatataccaaagttatttaccaacatattgtcgtcattgtgtcagggacttgtggatgagtt |
45078812 |
T |
|
| Q |
306 |
tcgcataccaaagagagaagatacaaaagcaattgagttcttaccttcgtggaggtttgctaatgggatgttcgctttggtcctttcatttggccttctc |
405 |
Q |
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| T |
45078813 |
tcgcataccaaagagagaagatacaaaagcaattgagttcttaccttcgtggaggtttgctaatgggatgttcgctttggtcctttcatttggccttctc |
45078912 |
T |
|
| Q |
406 |
cttactgcattaaaaagcagaaaggctagatcatggcgttatggtagtggtaagtgctatataatatacatatgcagattgtctctgcaacttaaaagtt |
505 |
Q |
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| T |
45078913 |
cttactgcattaaaaagcagaaaggctagatcatggcgttatggtagtggtaagtgct-----atatacatatgtaaattgtctctgcaacttaaaagtt |
45079007 |
T |
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| Q |
506 |
ctgaacccgtcactgcatataatcatttggttttcttagaaaataatttatttaactttaaccacaggtt |
575 |
Q |
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| T |
45079008 |
ctgaacccgtcactgcatataatcatttggttttcttagaaaataatttatttaactttaactacaggtt |
45079077 |
T |
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