View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8962_high_2 (Length: 361)
Name: NF8962_high_2
Description: NF8962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8962_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 37749507 - 37749181
Alignment:
| Q |
19 |
ttgtttattttcttaggaatttgaaagatctttgccttgaaggaactctagcaccagagcttgttaaccttgttcacataaaatctatgtaagcattgtt |
118 |
Q |
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| T |
37749507 |
ttgtttattttcttaggaatttgaaagatctttgccttgaaggaactctagcaccagagcttgtgaaccttgttcacataaaatctatgtaagcgttgtt |
37749408 |
T |
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| Q |
119 |
attttattgcttggtggcattgttataagaagttccttactttttcttcttttttagcccctttcattctaataacaatccatgaatatgttgtgtagta |
218 |
Q |
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| T |
37749407 |
attttattgcttggtggcattgttataagaagttccttactttttcttcttttttagcccctttcattctaataacaatccatgaatatgttgtgtagta |
37749308 |
T |
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| Q |
219 |
ttttaaggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggatataacaacttcagtggaca |
318 |
Q |
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| T |
37749307 |
ttttaaggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggatataacaacttcagtggaca |
37749208 |
T |
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| Q |
319 |
tctagatgctaattttggtcataatat |
345 |
Q |
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| T |
37749207 |
tctagatgctaattttggtcataatat |
37749181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 40996451 - 40996379
Alignment:
| Q |
19 |
ttgtttattttcttaggaatttgaaagatctttgccttgaaggaactctagcaccagagcttgttaaccttgt |
91 |
Q |
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| T |
40996451 |
ttgtttattttcttagaaatttgaaagaccttttccttgaagaaactctagcaccagagcttgtgaatcttgt |
40996379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 200 - 345
Target Start/End: Original strand, 43006684 - 43006829
Alignment:
| Q |
200 |
atgaatatgttgtgtagtattttaaggaacaactctttctatggaaccatacctgaagaaattgtagacttgaaacaattggagattttggatttgggat |
299 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||| ||| |||| ||||||||||||||||| | |
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| T |
43006684 |
atgaatatgttgtgcagtattttaaggaacaactctttctatggtaccatacttgaagaagttgtaggcttaaaagaatttgagattttggatttgggtt |
43006783 |
T |
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| Q |
300 |
ataacaacttcagtggacatctagatgctaattttggtcataatat |
345 |
Q |
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| T |
43006784 |
acaacaactttagtggacatctagatgctaattttgagcataatat |
43006829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 35607012 - 35607073
Alignment:
| Q |
200 |
atgaatatgttgtgtagtattttaaggaacaactctttctatggaaccatacctgaagaaatt |
262 |
Q |
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| T |
35607012 |
atgaatatgttgtgcaatatttta-gcaacaactctttctatgacaccatacttgaagaaatt |
35607073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 32068725 - 32068647
Alignment:
| Q |
33 |
aggaatttgaaagatctttgccttgaaggaactctagcaccagagcttgttaaccttgttcacataaaatctatgtaag |
111 |
Q |
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|||||||||||| | ||||| |||||||||| |||||||| ||||| | | ||||||||||||||| || ||||||| |
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| T |
32068725 |
aggaatttgaaaaacctttgtcttgaaggaaatctagcacatgagctcggaagccttgttcacataaagtccatgtaag |
32068647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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