View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8962_low_3 (Length: 746)
Name: NF8962_low_3
Description: NF8962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8962_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 687; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 5 - 726
Target Start/End: Complemental strand, 45248619 - 45247904
Alignment:
| Q |
5 |
gtttggtgttataggtggttttctgttttaatggctgtgaattcaaatgctgatgctgttttatttgatcatcatgagaatgaggttttggggttcaact |
104 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45248619 |
gttttgtgttataggtggttttctgttttaatggctgtgaattcaaatgctgat------ttatttgatcatcatgagaatgaggttttggggttcaact |
45248526 |
T |
|
| Q |
105 |
ctataataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttggaagaaccagttgttcaagaatgtttgatgtttatga |
204 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45248525 |
ctataataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttggaagaaccagttgttcaagaatgtttgatgtttatga |
45248426 |
T |
|
| Q |
205 |
tggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgattgaacaggcgtgtcagaatgtagggaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45248425 |
tggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgattgaacaggcgtgtcagaatgtagggaaa |
45248326 |
T |
|
| Q |
305 |
gttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgagaacgatgttgctttggcaaattttagtgcagttgtggaga |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45248325 |
gttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgagaacgatgttgctttggcaaattttagtgcagttgtggagg |
45248226 |
T |
|
| Q |
405 |
atgacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctcagatgttgcaacctaccgattacaggatgg |
504 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45248225 |
atgacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctcagatgttgcaacctaccgattacaggatgg |
45248126 |
T |
|
| Q |
505 |
aattcgatatgcgaaaggcattgatgtcaaagcagaagagtctttgaaacagtcaagctttctgtcagatgcacaactaaatgtgattcaagaccaaacc |
604 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45248125 |
aattcgatatgcggaaggcattgatgtcaaagcagaagagtctttgaaacagtcaagctttctgtcagatgcacaactaaatgtgattcaagaccaaacc |
45248026 |
T |
|
| Q |
605 |
acaaacatcagtatttctggagcaggtattccgaataatattcaatatgattgtcgaggttttgatcttaattcaaacaaaaacacacaagaggataggg |
704 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45248025 |
acaaacatcagtatttctggagcaggtattccgaataatattcaatatgattgtcgaggttttgatcttaattcaaacaaaaacacacaagaggataggg |
45247926 |
T |
|
| Q |
705 |
tgcctagggaatcaatgttttc |
726 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
45247925 |
tgcctagggaatcaatgttttc |
45247904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 291 - 673
Target Start/End: Original strand, 44864220 - 44864602
Alignment:
| Q |
291 |
agaatgtagggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgagaacgatgttgctttggcaaattttag |
390 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| | | | ||| || |
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| T |
44864220 |
agaatgtggggaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacgaacaagagaacggggctaaaaacgttgctttaag |
44864319 |
T |
|
| Q |
391 |
tgcagttgtggagaatgacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctcagatgttgcaacctac |
490 |
Q |
| |
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| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44864320 |
cacggttgtggaggatggcggtgttttaaaagctgctgatagttttgttgctactaaatatgatcctgaagattctcgtgtctcagatgttgcaacctac |
44864419 |
T |
|
| Q |
491 |
cgattacaggatggaattcgatatgcgaaaggcattgatgtcaaagcagaagagtctttgaaacagtcaagctttctgtcagatgcacaactaaatgtga |
590 |
Q |
| |
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| ||||||||||||| ||| ||||| | ||||||| | ||||||||||||||||||||||||||| || |||| |||||| || ||| ||||||||| |
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| T |
44864420 |
caattacaggatggagttccatatgtggaaggcatgaacgtcaaagcagaagagtctttgaaacagccagactttatgtcagttgatcaagtaaatgtga |
44864519 |
T |
|
| Q |
591 |
ttcaagaccaaaccacaaacatcagtatttctggagcaggtattccgaataatattcaatatgattgtcgaggttttgatctt |
673 |
Q |
| |
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|||||||| |||||||| |||||| |||||||||||||||||| ||| |||||| |||||| ||||| || ||| |||||||| |
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| T |
44864520 |
ttcaagacaaaaccacatacatcaatatttctggagcaggtatcccgcataatagtcaatacgattgccgtggtattgatctt |
44864602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 44863876 - 44864035
Alignment:
| Q |
10 |
gtgttataggtggttttctgttttaatggctgtgaattcaaatgctgatgctgttttatttgatcatcatgagaatgaggttttggggttcaactctata |
109 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
44863876 |
gtgttataggtggttttctgttactatagctatgaatttaaatgctgatgctgttttatttgatcatcatgagaatggggttttggggtttaactctata |
44863975 |
T |
|
| Q |
110 |
ataaggtctaatgttaacgttggtctctcttgttctgaaatcctaatctgtgatgttgga |
169 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
44863976 |
ataaggtttaatgttaacgttggtctctcttgttctcaaaccctaatctgtgatgttgga |
44864035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 44864078 - 44864137
Alignment:
| Q |
218 |
gggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgatt |
277 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||| | |||||| ||||||||||||||| |
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| T |
44864078 |
gggaaagtaggaaaattttcatgtgggttggtgaaaaatgaagaggagaaaagtgtgatt |
44864137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 301 - 531
Target Start/End: Complemental strand, 28754625 - 28754395
Alignment:
| Q |
301 |
gaaagttgcattgagtaatgaggttcaaggagttgaagatgatgtgactgagcacaagcacgag---aacgatgttgctttggcaaattttagtgcagtt |
397 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||||||||||||||||| | ||| || || | ||||||||| | ||||| || || | | |
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| T |
28754625 |
gaaagttgcattgagtaacgagcttcaaggagttaaagatgatgtgactgagggtgatcacaaggttaaaaaagttgctttgccgaatttaagcgcggct |
28754526 |
T |
|
| Q |
398 |
gtggagaatgacggtgttttaaaagctgctgatagttttgttgttactaaagatgattctgaagattctcgtgtctcagatgttgcaacctaccgattac |
497 |
Q |
| |
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|||||| |||| ||||| |||||||||||||| |||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||| ||| | |
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| T |
28754525 |
gtggaggatgaaggtgtgataaaagctgctgattgttttgtt---actaaagatgatcctgaagattctagtgtctctgatgttgcaacctaccaattgc |
28754429 |
T |
|
| Q |
498 |
aggatggaattcgatatgcgaaaggcattgatgt |
531 |
Q |
| |
|
|||||||||||| ||||| | ||||||| ||||| |
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|
| T |
28754428 |
aggatggaattccatatgtggaaggcatggatgt |
28754395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 186 - 277
Target Start/End: Complemental strand, 28754809 - 28754718
Alignment:
| Q |
186 |
gaatgtttgatgtttatgatggagggtgtggtgggaaagtagggaaattttcatgtgggttgatgaagattgaagatgagaaaagtgtgatt |
277 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||| ||| |||||||||||||||||| |||||| ||| |||||||||||||||||| |
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| T |
28754809 |
gaatgtttgatgttgttgatggagggtgtgatgggaaaggaggaaaattttcatgtgggttggtgaagaatgatgatgagaaaagtgtgatt |
28754718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 548 - 673
Target Start/End: Complemental strand, 28754321 - 28754196
Alignment:
| Q |
548 |
ttgaaacagtcaagctttctgtcagatgcacaactaaatgtgattcaagaccaaaccacaaacatcagtatttctggagcaggtattccgaataatattc |
647 |
Q |
| |
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||||||||| || |||||| |||||||||||| ||||||||||||| | ||||||||| ||||| ||| |||||||||| ||| | | ||||||| |
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| T |
28754321 |
ttgaaacagccagtctttctatcagatgcacaagtaaatgtgattcagaatcaaaccacatgcatcaatatgtctggagcagctatatctgagaatattc |
28754222 |
T |
|
| Q |
648 |
aatatgattgtcgaggttttgatctt |
673 |
Q |
| |
|
||||||||||| | |||||||||||| |
|
|
| T |
28754221 |
aatatgattgttgcggttttgatctt |
28754196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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