View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8963_high_1 (Length: 858)

Name: NF8963_high_1
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8963_high_1
NF8963_high_1
[»] chr1 (6 HSPs)
chr1 (58-844)||(51457885-51458674)
chr1 (659-777)||(30204068-30204186)
chr1 (661-777)||(51483059-51483175)
chr1 (661-777)||(51499896-51500012)
chr1 (473-588)||(51482835-51482950)
chr1 (531-588)||(51499733-51499790)
[»] chr5 (6 HSPs)
chr5 (411-847)||(43162513-43162947)
chr5 (96-355)||(43162247-43162497)
chr5 (657-777)||(27398527-27398647)
chr5 (661-777)||(20866760-20866876)
chr5 (473-588)||(20867027-20867142)
chr5 (532-588)||(27398420-27398476)
[»] scaffold0020 (2 HSPs)
scaffold0020 (661-777)||(135504-135620)
scaffold0020 (473-580)||(135782-135888)
[»] chr3 (1 HSPs)
chr3 (531-588)||(36549804-36549861)


Alignment Details
Target: chr1 (Bit Score: 687; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 58 - 844
Target Start/End: Original strand, 51457885 - 51458674
Alignment:
Q  58 acgaaaggttttattgttgttatgaatcgagtataggataaaaagtgcataatttgtaggacatgtgcatttttgttttgtaagccatttcatttatctg 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  51457885 acgaaaggttttattgttgttatgaatcgagtataggataaaaagtgcataatttgtgggacatgtgcatttttgttttggaagccatttcatttatctg 51457984  T
Q  158 tttattttcttacgagctgattgttgtgcagcttcaagtatatgtcataattctttgttcattgcactgtcatagataatttattcatttgatttgttat 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51457985 tttattttcttacgagctgattgttgtgcagcttcaagtatatgtcataattctttgttcattgcactgtcatagataatttatccatttgatttgttat 51458084  T
Q  258 ttctcttgggattttggtaataatgactcaaaaaagtattctttttatgaccagtggcataaactgcaaagtatttttaggacttgaataatgaatgatg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458085 ttctcttgggattttggtaataatgactcaaaaaagtattctttttatgacaagtggcataaactgcaaagtatttttaggacttgaataatgaatgatg 51458184  T
Q  358 catttcctgatcaattctttgttagcactttataactattgannnnnnnctccaagtgaatattttattatgaggaaaattaaatgtttattannnnnnn 457  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||            
T  51458185 catttcctgatcaattctttgttagcactttataactattgatttttttctccaagtgaatattttattatgaggaaaattaaatgtttatttttttttt 51458284  T
Q  458 n---gtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagca 554  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458285 ttttgtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagca 51458384  T
Q  555 ccttgagcaagataagagggagctacatgatgatggggaggcggttgatatgtttcaccaactctttgacactaatgatgatgacctgatggttggagag 654  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51458385 ccttgagcaagataagagggagctacatggtgatggggaggcggttgatatgtttcaccaactctctgacactaatgatgatgacctgatggttggagag 51458484  T
Q  655 gatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtca 754  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458485 gatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtca 51458584  T
Q  755 attgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagttatagggatgcccctcatgaccatttactttctct 844  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||||||    
T  51458585 attgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagctctatggatgcccctcatgaccatttaccttctct 51458674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 659 - 777
Target Start/End: Complemental strand, 30204186 - 30204068
Alignment:
Q  659 ccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattg 758  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |||||| ||||    
T  30204186 ccttagatggtgctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattg 30204087  T
Q  759 cattcctttaaagcaggta 777  Q
    |  ||||||||||||||||    
T  30204086 ctctcctttaaagcaggta 30204068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 661 - 777
Target Start/End: Original strand, 51483059 - 51483175
Alignment:
Q  661 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 760  Q
    ||||| |||||||| |||||||||||||||||||||||||||||  ||||| |||||||| || |||||||||||| ||||||||| |||||| |||||     
T  51483059 ttagatggtgctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgct 51483158  T
Q  761 ttcctttaaagcaggta 777  Q
     ||||||||||||||||    
T  51483159 ctcctttaaagcaggta 51483175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 661 - 777
Target Start/End: Original strand, 51499896 - 51500012
Alignment:
Q  661 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 760  Q
    ||||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||| || |||||||||||||||||||||| |||||| | | |     
T  51499896 ttagacggtgctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcct 51499995  T
Q  761 ttcctttaaagcaggta 777  Q
     ||||||||||||||||    
T  51499996 ctcctttaaagcaggta 51500012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 588
Target Start/End: Original strand, 51482835 - 51482950
Alignment:
Q  473 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 572  Q
    |||||||||||||||||||||| ||| ||||| || | ||| ||||||  |||  || |||| ||||| |||| |  ||||||||||||||||| |||||    
T  51482835 aggtaaatgtgttgactcatattgctgaagtgaaattgaaatctgagggcattgctgccattgagaaactgacacaaaagcaccttgagcaagacaagag 51482934  T
Q  573 ggagctacatgatgat 588  Q
    ||||||||||| ||||    
T  51482935 ggagctacatggtgat 51482950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 588
Target Start/End: Original strand, 51499733 - 51499790
Alignment:
Q  531 cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 588  Q
    |||||||||||||||    ||||||||||||||||| |||||||||||||||| ||||    
T  51499733 cattaagaaattgacagaaaagcaccttgagcaagacaagagggagctacatggtgat 51499790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 411 - 847
Target Start/End: Original strand, 43162513 - 43162947
Alignment:
Q  411 aagtgaatattttattatgaggaaaattaaatgtttattannnnnnnngtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaacta 510  Q
    ||||||||||||||||||||||||||||||||||||  |         |||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  43162513 aagtgaatattttattatgaggaaaattaaatgttt--tcttttttttgtaatttgactataaggtaaatgtgttgacgcatatcgctaaagtggaactg 43162610  T
Q  511 aaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgatggggaggcggttgatatgtttc 610  Q
    |||||||||||||||| |||||||||||||||||  |  |||||||||||||||||||||||||| ||  ||| |||| | |||| |||||| || ||||    
T  43162611 aaacctgaggaaattaatgtcattaagaaattgagacagaagcaccttgagcaagataagagggacctttatggtgatcgagaggtggttgaaatatttc 43162710  T
Q  611 accaactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaatt 710  Q
    | | || ||  ||||||||||||  |||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43162711 atcgacactccgacactaatgatagtgacttggtggttggaggggaccccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaatt 43162810  T
Q  711 gaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagtt 810  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||| |    
T  43162811 gaaggaatatataaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaaagcaggtaaaatcagcttagacaattttccattatctagct 43162910  T
Q  811 atagggatgcccctcatgaccatttactttctctgct 847  Q
     || ||||||||||| ||| |||||||||||||||||    
T  43162911 ctatggatgcccctcgtgatcatttactttctctgct 43162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 96 - 355
Target Start/End: Original strand, 43162247 - 43162497
Alignment:
Q  96 taaaaagtgcataatttgtaggacatgtgcatttttgttttgtaagccatttcatttatctgtttattttcttacgagctgattgttgtgcagcttcaag 195  Q
    |||||||| ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||| || ||||||    
T  43162247 taaaaagtacataatttacaggacatgtgtgtttttgttttgtaagccattgcatttatctgttcattttcttaggagctgaatgttgtgtagtttcaag 43162346  T
Q  196 tatatgtcataattctttgttcattgcactgtcatagataatttattcatttgatttgttatttctcttgggattttggtaa-taatgactcaaaaaagt 294  Q
    || | ||||||||| ||||| |||||||||||||||||||||||  | ||||||||||          |||  ||||||||| |||||| || ||||||     
T  43162347 tacaagtcataattttttgtccattgcactgtcatagataatttcataatttgatttg----------tggtgttttggtaattaatgattcgaaaaaga 43162436  T
Q  295 attctttttatgaccagtggcataaactgcaaagtatttttaggacttgaataatgaatga 355  Q
    |||||||||| ||| |||| |||||||| ||||||||| ||| ||| ||||||| ||||||    
T  43162437 attctttttacgactagtgacataaacttcaaagtattcttacgacatgaataacgaatga 43162497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 657 - 777
Target Start/End: Original strand, 27398527 - 27398647
Alignment:
Q  657 tcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaat 756  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||   |||| ||||||||||  |||||||||||||||||||||| |||||| ||    
T  27398527 tcccttagatggtgctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccat 27398626  T
Q  757 tgcattcctttaaagcaggta 777  Q
    |||  ||||||| || |||||    
T  27398627 tgctctcctttagaggaggta 27398647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 661 - 777
Target Start/End: Complemental strand, 20866876 - 20866760
Alignment:
Q  661 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 760  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||  |||||||||   |||||||||| ||| || ||||      
T  20866876 ttagatggtgctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgtt 20866777  T
Q  761 ttcctttaaagcaggta 777  Q
     ||||||||||||||||    
T  20866776 ctcctttaaagcaggta 20866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 473 - 588
Target Start/End: Complemental strand, 20867142 - 20867027
Alignment:
Q  473 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 572  Q
    |||||||||||||||||||| | ||||||||||||||  || ||| |   |||| ||  ||||| ||||| ||    ||||||||||||||||| |||||    
T  20867142 aggtaaatgtgttgactcatgttgctaaagtggaactggaaactgtgagcattactgcaattaaaaaattaacagaaaagcaccttgagcaagacaagag 20867043  T
Q  573 ggagctacatgatgat 588  Q
    ||||||||||| ||||    
T  20867042 ggagctacatggtgat 20867027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 532 - 588
Target Start/End: Original strand, 27398420 - 27398476
Alignment:
Q  532 attaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 588  Q
    |||||||||||||  |  ||||||||||||||||| |||||||||||||||| ||||    
T  27398420 attaagaaattgaaacaaaagcaccttgagcaagacaagagggagctacatggtgat 27398476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 661 - 777
Target Start/End: Complemental strand, 135620 - 135504
Alignment:
Q  661 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 760  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| ||| || |||||     
T  135620 ttagatggtgctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgct 135521  T
Q  761 ttcctttaaagcaggta 777  Q
     ||||||||||||||||    
T  135520 ctcctttaaagcaggta 135504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 580
Target Start/End: Complemental strand, 135888 - 135782
Alignment:
Q  473 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 572  Q
    |||||||||||||||||||||| ||||| ||||||||  || |||||   |||| ||  |||||||||||||| |  ||||||||||||||||| |||||    
T  135888 aggtaaatgtgttgactcatattgctaa-gtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagag 135790  T
Q  573 ggagctac 580  Q
    ||||||||    
T  135789 ggagctac 135782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 588
Target Start/End: Original strand, 36549804 - 36549861
Alignment:
Q  531 cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 588  Q
    ||||||||||||||  |  ||||||||||||||||||||||||| |||||||| ||||    
T  36549804 cattaagaaattgatacaaaagcaccttgagcaagataagagggtgctacatggtgat 36549861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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