View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_high_14 (Length: 303)
Name: NF8963_high_14
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 290
Target Start/End: Complemental strand, 6466605 - 6466330
Alignment:
| Q |
15 |
cagagaacaagagcaaaacaaatgcaaagattccagcttcgcaaacaataatcataagcattagttcataacaatctatattgtattgnnnnnnnnttac |
114 |
Q |
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| T |
6466605 |
cagagaacaagagcaaaacaaatgcaaagattccagcttcgcaaacaataatcataagcattagttcataacaatctatattgtattgaaaaaaaattac |
6466506 |
T |
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| Q |
115 |
caatcgtgaaggtttgatttaacatcatacgtccatcttcattgtttcctgaaaataaaaatagtaagaataattgttacaaacataactctgaaatatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6466505 |
caatcgtgaaggtttgatttaacatcatacgtccatcttcattgtttcctgaaaataaaaatagtaagaataattgttacaaacataactctgaaatatt |
6466406 |
T |
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| Q |
215 |
ttgaggtttggagaaaaagtattgaaagattatgaaatgtttttaatataaaataagggtcgctaactgatgtcca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6466405 |
ttgaggtttggagaaaaagtattgaaagattatgaaatgtttttaatataaaataagggtcgctaactgatgtcca |
6466330 |
T |
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