View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8963_low_10 (Length: 603)

Name: NF8963_low_10
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8963_low_10
NF8963_low_10
[»] chr3 (2 HSPs)
chr3 (13-569)||(26452896-26453464)
chr3 (512-582)||(26452805-26452875)
[»] chr4 (11 HSPs)
chr4 (346-489)||(23676325-23676469)
chr4 (491-583)||(21538922-21539014)
chr4 (491-582)||(4873037-4873128)
chr4 (507-574)||(5979786-5979853)
chr4 (507-582)||(3703584-3703659)
chr4 (506-548)||(12329026-12329068)
chr4 (501-547)||(21538844-21538890)
chr4 (507-549)||(25812263-25812305)
chr4 (496-533)||(2605367-2605404)
chr4 (526-571)||(48292387-48292432)
chr4 (506-547)||(53860895-53860936)
[»] chr1 (7 HSPs)
chr1 (186-243)||(47680531-47680588)
chr1 (490-574)||(49632910-49632995)
chr1 (513-547)||(11985458-11985492)
chr1 (491-582)||(30018564-30018654)
chr1 (74-156)||(47680406-47680488)
chr1 (496-548)||(30018687-30018740)
chr1 (491-571)||(36724171-36724251)
[»] chr8 (2 HSPs)
chr8 (491-582)||(25939281-25939372)
chr8 (500-548)||(9040955-9041003)
[»] scaffold0110 (2 HSPs)
scaffold0110 (491-582)||(11425-11516)
scaffold0110 (491-582)||(19162-19253)
[»] chr7 (5 HSPs)
chr7 (512-582)||(27866682-27866752)
chr7 (496-540)||(36390712-36390756)
chr7 (507-582)||(48073016-48073091)
chr7 (517-569)||(27747373-27747425)
chr7 (512-544)||(39933632-39933664)
[»] chr6 (4 HSPs)
chr6 (513-569)||(30351451-30351507)
chr6 (491-582)||(3806174-3806264)
chr6 (500-547)||(13613749-13613796)
chr6 (507-574)||(16396652-16396719)
[»] chr5 (10 HSPs)
chr5 (496-548)||(10818875-10818927)
chr5 (491-550)||(10818787-10818845)
chr5 (491-582)||(14613533-14613624)
chr5 (510-555)||(4639521-4639566)
chr5 (507-582)||(6706273-6706348)
chr5 (491-574)||(28976687-28976770)
chr5 (494-547)||(4192001-4192054)
chr5 (496-548)||(8367019-8367071)
chr5 (224-252)||(11727230-11727258)
chr5 (507-547)||(35924595-35924635)
[»] chr2 (3 HSPs)
chr2 (496-578)||(13793669-13793751)
chr2 (500-548)||(37096596-37096644)
chr2 (512-582)||(39994519-39994590)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 13 - 569
Target Start/End: Complemental strand, 26453464 - 26452896
Alignment:
Q  13 cctgtggagaaaaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagtgagagaagaggtatatt 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26453464 cctgtggagaacaattctcccactagaacatgttctagcactgactgcattagaaaaagtacagaaaaggtaagaaaagcagagagagaagaggtatatt 26453365  T
Q  113 ggaaaatgagagaagaaatatgaggagcctacataaagtaaaat------------gagttctagcattggagnnnnnnnttcagtggttgttaaatcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||       ||||||||||||||||||||    
T  26453364 ggaaaatgagagaagaaatatgaggagcctacataaagtaaaataggaagtgtgttgagttctagcattggagaaaaaaattcagtggttgttaaatcct 26453265  T
Q  201 acatggcatacttggacccacaatttagcagctaagaacaaaaaatttgttccagtgctttagaagctctaagattgatcggcacacccctttccattgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  26453264 acatggcatacttggacccacaatttagcagctaagaacaaaatatttgttccagtgctttagaagctccaagattgatcggcacacccctttccattgt 26453165  T
Q  301 tcagcctatcagatcgtaacttctgctaaacaannnnnnnnctttaaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaat 400  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453164 tcagcctatcagatcgtaacttctgctaaacaattttttttctttaaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaat 26453065  T
Q  401 tttaacaattcacagggtccgtgagcatttacccttaagtcagtgatgggagacaacagcacacaaagcccagtaggacaaaaataaagcgagaattgct 500  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26453064 tttaacaattcacggggtccgtgagcatttacccttaagtcagtgatgggagacaacagcacacaaagcccagtaggacaaaaataaagcgagaattgtt 26452965  T
Q  501 ttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 569  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||    
T  26452964 ttttggacatccattatttcctagaaacacatgaaaatgaccaaaaatactccagcaatagttaactac 26452896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 512 - 582
Target Start/End: Original strand, 26452805 - 26452875
Alignment:
Q  512 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452805 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 26452875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 346 - 489
Target Start/End: Original strand, 23676325 - 23676469
Alignment:
Q  346 aaagttggaccatattataggattcaatgcttgtttttctcaccccatgtgaaattttaa-caattcacagggtccgtgagcatttacccttaagtcagt 444  Q
    |||| ||||| | ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||| | ||||||||    
T  23676325 aaaggtggactaaattctaggattcaatgcttgtttttctcactccatgtgaaattttaagcaattcaaggggtccgtgagcatttaccgtcaagtcagt 23676424  T
Q  445 gatgggagacaacagcacacaaagcccagtaggacaaaaataaag 489  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||    
T  23676425 gatgggagacaccagcacagaaatcccagtaggacaaaaataaag 23676469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 583
Target Start/End: Complemental strand, 21539014 - 21538922
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataat 583  Q
    ||||||||||||||  || |||| ||||| ||||||||||| | ||||||||||||||||||||    ||||||| |||||||||||||||||    
T  21539014 gagaattgctttttaaactttcaatgtttcctagaaacacaaggaaatgaccaaaaacaccccaatggtagttaattaccgctggcttataat 21538922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 4873037 - 4873128
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    ||||||| |||||| ||| | |||| ||||||| ||||||||| |||||| |||||||||  ||||  |||||||||||||||| |||||||    
T  4873037 gagaatttcttttttgacttccattattttctaaaaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttataa 4873128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 5979853 - 5979786
Alignment:
Q  507 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 574  Q
    |||||||||||||  |||||||| ||| |||||||||||||||||||| |  ||||||||||||||||    
T  5979853 acattcattgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactaccgctg 5979786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 582
Target Start/End: Original strand, 3703584 - 3703659
Alignment:
Q  507 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||| ||||||||| ||||||||||||||||||||||||||  |  ||||  ||||||||||||| || |||||||    
T  3703584 acatccattgttttttagaaacacatgaaaatgaccaaaaaatcatcagcggtagttaactaccgttgacttataa 3703659  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 506 - 548
Target Start/End: Complemental strand, 12329068 - 12329026
Alignment:
Q  506 gacattcattgttttctagaaacacatgaaaatgaccaaaaac 548  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||    
T  12329068 gacatccattgttttttagaaacacatgaaaatgatcaaaaac 12329026  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 547
Target Start/End: Original strand, 21538844 - 21538890
Alignment:
Q  501 ttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 547  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||    
T  21538844 tttttgacatccattgttttctagaaacacatggaaataaccaaaaa 21538890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 549
Target Start/End: Original strand, 25812263 - 25812305
Alignment:
Q  507 acattcattgttttctagaaacacatgaaaatgaccaaaaaca 549  Q
    |||| |||||||||||||||||||||| |||||| ||||||||    
T  25812263 acatccattgttttctagaaacacatggaaatgatcaaaaaca 25812305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 533
Target Start/End: Original strand, 2605367 - 2605404
Alignment:
Q  496 ttgctttttggacattcattgttttctagaaacacatg 533  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  2605367 ttgcttttttgacattcattgtttcctagaaacacatg 2605404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Complemental strand, 48292432 - 48292387
Alignment:
Q  526 aacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 571  Q
    |||||||| |||||||||||||||| |||||  |||||||||||||    
T  48292432 aacacatgtaaatgaccaaaaacactccagcggtagttaactaccg 48292387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 547
Target Start/End: Complemental strand, 53860936 - 53860895
Alignment:
Q  506 gacattcattgttttctagaaacacatgaaaatgaccaaaaa 547  Q
    ||||| |||||||| ||||||||||||| |||||||||||||    
T  53860936 gacatccattgtttcctagaaacacatggaaatgaccaaaaa 53860895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 47680531 - 47680588
Alignment:
Q  186 tggttgttaaatcctacatggcatacttggacccacaatttagcagctaagaacaaaa 243  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  47680531 tggttgttaaatcctacatggcatacttggacccaatatttagcagctaagaacaaaa 47680588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 574
Target Start/End: Complemental strand, 49632995 - 49632910
Alignment:
Q  490 cgagaattgctttttg-gacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 574  Q
    |||||||||||||||  ||||| ||||| |||||||||||||||| ||||||||||||||| ||  |   ||||||||||||||||    
T  49632995 cgagaattgctttttttgacatccattgatttctagaaacacatggaaatgaccaaaaacatcctcgtggtagttaactaccgctg 49632910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 547
Target Start/End: Original strand, 11985458 - 11985492
Alignment:
Q  513 attgttttctagaaacacatgaaaatgaccaaaaa 547  Q
    |||||||||||||||||||||||||||||||||||    
T  11985458 attgttttctagaaacacatgaaaatgaccaaaaa 11985492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 30018564 - 30018654
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    ||||||||||||||| |||  |||||||| |||||| | ||||||||||| ||||||||| | |||  |||||||||| |||  ||||||||    
T  30018564 gagaattgctttttg-acaaccattgtttcctagaagcgcatgaaaatgatcaaaaacactcaagcggtagttaactatcgcgtgcttataa 30018654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 47680406 - 47680488
Alignment:
Q  74 cagaaaaggtaagaaaagcagtgagagaagaggtatattggaaaatgagagaagaaatatgaggagcctacataaagtaaaat 156  Q
    ||||||| |||||| |||  | ||||||||||||||| ||||  || |||||||||| | ||||  |||||||||||||||||    
T  47680406 cagaaaaagtaagagaaggggagagagaagaggtataatggatgataagagaagaaacacgagggtcctacataaagtaaaat 47680488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 30018740 - 30018687
Alignment:
Q  496 ttgctttttggacattcattgttttctagaaa-cacatgaaaatgaccaaaaac 548  Q
    ||||||||| ||||| |||||||| ||||||| |||||| ||||||||||||||    
T  30018740 ttgcttttttgacatccattgtttcctagaaaacacatggaaatgaccaaaaac 30018687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 571
Target Start/End: Original strand, 36724171 - 36724251
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccg 571  Q
    ||||||| ||||||  |||||  ||||||||||||| |  ||| ||||||||||||||| |||||   |||||||||||||    
T  36724171 gagaattcctttttttacatttgttgttttctagaagcgtatggaaatgaccaaaaacatcccagtggtagttaactaccg 36724251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 25939281 - 25939372
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||||||| |||||| | ||||||||||| ||||||||| ||| ||| |||||||||||| | |||  ||||||||||||||||||||||||    
T  25939281 gagaattgttttttgaatattcattgtttcctagaaacatatggaaaagaccaaaaacacacaagcggtagttaactaccgctggcttataa 25939372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 548
Target Start/End: Complemental strand, 9041003 - 9040955
Alignment:
Q  500 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 548  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| ||||||    
T  9041003 ttttttgacattcattgtttcctagaaacacatggaaatgactaaaaac 9040955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 11425 - 11516
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  ||||||||||| || | |||||||    
T  11425 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactactgccgacttataa 11516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 19162 - 19253
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    ||||||||||||||  ||||| ||||||| ||||||||| |||||||||||||||||||  |||||  ||||||||||| || | |||||||    
T  19162 gagaattgcttttttcacattgattgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactactgccgacttataa 19253  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 512 - 582
Target Start/End: Complemental strand, 27866752 - 27866682
Alignment:
Q  512 cattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||||||| ||||||||| |||||||||||| |||||| || | | ||||||||||||||||| |||||||    
T  27866752 cattgtttcctagaaacatatgaaaatgaccgaaaacaaccgaacgatagttaactaccgctgacttataa 27866682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 540
Target Start/End: Original strand, 36390712 - 36390756
Alignment:
Q  496 ttgctttttggacattcattgttttctagaaacacatgaaaatga 540  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||    
T  36390712 ttgcttttttgacatttagtgttttctagaaacacatgaaaatga 36390756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 582
Target Start/End: Original strand, 48073016 - 48073091
Alignment:
Q  507 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||||| ||||||  |||||||||||| ||||||||||||| || | ||| |||||||||||   |||||||||||    
T  48073016 acattctttgtttattagaaacacatggaaatgaccaaaaatactctagcgatagttaactattactggcttataa 48073091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 569
Target Start/End: Original strand, 27747373 - 27747425
Alignment:
Q  517 ttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 569  Q
    ||||||||||||||||||||||||| ||||| | | ||||  |||||||||||    
T  27747373 ttttctagaaacacatgaaaatgactaaaaataactcagcggtagttaactac 27747425  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 544
Target Start/End: Complemental strand, 39933664 - 39933632
Alignment:
Q  512 cattgttttctagaaacacatgaaaatgaccaa 544  Q
    |||| ||||||||||||||||||||||||||||    
T  39933664 cattattttctagaaacacatgaaaatgaccaa 39933632  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 569
Target Start/End: Original strand, 30351451 - 30351507
Alignment:
Q  513 attgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactac 569  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  30351451 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 30351507  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 3806174 - 3806264
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||||||||||||   |||| ||| ||||||||||||||||| |||| ||||||||||| |||| ||||| | |||||| |||| |||||||    
T  3806174 gagaattgcttttgtcacatccatcgttttctagaaacacat-aaaaagaccaaaaacatcccaacaataatcaactacagctgacttataa 3806264  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 547
Target Start/End: Original strand, 13613749 - 13613796
Alignment:
Q  500 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 547  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||    
T  13613749 tttttcgacatctattgttttctagaaacacatgaaaatgaccaaaaa 13613796  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 574
Target Start/End: Complemental strand, 16396719 - 16396652
Alignment:
Q  507 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 574  Q
    |||| ||||||||| |||||| || |||||||||| |||||||||||| |  ||||||||||||||||    
T  16396719 acatccattgttttttagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactaccgctg 16396652  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 10818927 - 10818875
Alignment:
Q  496 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 548  Q
    ||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  10818927 ttgcttttttgacatccattgttttctaaaaacacatggaaatgaccaaaaac 10818875  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 550
Target Start/End: Original strand, 10818787 - 10818845
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacac 550  Q
    ||||||||||||||  |||| ||||||||||||||||||||| ||||| |||||||||||    
T  10818787 gagaattgcttttttaacat-cattgttttctagaaacacattaaaattaccaaaaacac 10818845  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 491 - 582
Target Start/End: Original strand, 14613533 - 14613624
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||||||||||||    ||| |||||||| |||||||||||||||||| ||||||||||| ||| |  |||||| | || ||||||||||||    
T  14613533 gagaattgcttttctcgcatccattgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagttagccactgctggcttataa 14613624  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 4639566 - 4639521
Alignment:
Q  510 ttcattgttttctagaaacacatgaaaatgaccaaaaacaccccag 555  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  4639566 ttcattgtttcttagaaacacatgaaaatgatcaaaaacaccccag 4639521  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 582
Target Start/End: Original strand, 6706273 - 6706348
Alignment:
Q  507 acattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||||||||||||  || |||||||||||||| ||||||||||   ||||  ||||||||||||| || |||||||    
T  6706273 acattcattgtttcttataaacacatgaaaataaccaaaaacatttcagcggtagttaactaccgttgacttataa 6706348  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 574
Target Start/End: Complemental strand, 28976770 - 28976687
Alignment:
Q  491 gagaattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctg 574  Q
    |||||||||||||   |||| ||||||||  |||||| |||||||||||| ||||||||  | | | |||||||||||||||||    
T  28976770 gagaattgcttttctcacatccattgtttcttagaaatacatgaaaatgatcaaaaacattcaaacgatagttaactaccgctg 28976687  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 547
Target Start/End: Complemental strand, 4192054 - 4192001
Alignment:
Q  494 aattgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaa 547  Q
    ||||||| |||  |||| |||||||| ||| |||||||||||||||||||||||    
T  4192054 aattgctgtttacacatccattgtttcctacaaacacatgaaaatgaccaaaaa 4192001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 548
Target Start/End: Original strand, 8367019 - 8367071
Alignment:
Q  496 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 548  Q
    ||||||||| ||||| |||||||| |||||||| |||  ||||||||||||||    
T  8367019 ttgcttttttgacatccattgtttcctagaaacccatagaaatgaccaaaaac 8367071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 11727258 - 11727230
Alignment:
Q  224 tttagcagctaagaacaaaaaatttgttc 252  Q
    |||||||||||||||||||||||||||||    
T  11727258 tttagcagctaagaacaaaaaatttgttc 11727230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 547
Target Start/End: Original strand, 35924595 - 35924635
Alignment:
Q  507 acattcattgttttctagaaacacatgaaaatgaccaaaaa 547  Q
    |||| |||| ||||||||||| |||||||||||||||||||    
T  35924595 acatccattattttctagaaaaacatgaaaatgaccaaaaa 35924635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 578
Target Start/End: Original strand, 13793669 - 13793751
Alignment:
Q  496 ttgctttttggacattcattgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggctt 578  Q
    ||||| ||| ||||| ||||||||  |||||||| |||| ||||||||||||||||||| |  ||||||||||| | ||||||    
T  13793669 ttgctgttttgacatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactacggttggctt 13793751  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 500 - 548
Target Start/End: Original strand, 37096596 - 37096644
Alignment:
Q  500 tttttggacattcattgttttctagaaacacatgaaaatgaccaaaaac 548  Q
    ||||| ||| |||||||||||||||||||||||| |||||| |||||||    
T  37096596 ttttttgaccttcattgttttctagaaacacatggaaatgatcaaaaac 37096644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 582
Target Start/End: Complemental strand, 39994590 - 39994519
Alignment:
Q  512 cattgttttctagaaacacatgaaaatga-ccaaaaacaccccagcaatagttaactaccgctggcttataa 582  Q
    |||||||||||||||||||||| |||||| ||||||| |  ||| ||| |||||||||||| || |||||||    
T  39994590 cattgttttctagaaacacatggaaatgacccaaaaaaattccaacaacagttaactaccgttgacttataa 39994519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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