View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_11 (Length: 593)
Name: NF8963_low_11
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 501; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 13 - 577
Target Start/End: Original strand, 46129100 - 46129669
Alignment:
| Q |
13 |
taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaa-tgttagaaggatagagtagaagaactaa |
111 |
Q |
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| T |
46129100 |
taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaaatgttagaaggatagagtagaagaactaa |
46129199 |
T |
|
| Q |
112 |
ttattctatgatgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggtaactatgat |
211 |
Q |
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| T |
46129200 |
ttattccatgatgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggtaactatgat |
46129299 |
T |
|
| Q |
212 |
ag----ttgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattctgttgnnnnnnnnggtcca |
307 |
Q |
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| T |
46129300 |
atataattgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattctgttgaaaaaaaaggtcca |
46129399 |
T |
|
| Q |
308 |
tgttagagctagagctacatataatgcatgtcggacgacccttaatgttctttagcaagtcggatgaaccttaatgttgtttactcttaatgttgtttaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46129400 |
tgttagagctagagctacatataatgcatgtcggacgacccttaatgttctttagcatgtcggatgaaccttaatgttgtttactcttaatgttgtttaa |
46129499 |
T |
|
| Q |
408 |
caggcacaaaccgttcttgcaatgaaaaaggacttactgtcggacgaccctgctgcacaactggaagcaactactcagtttggaaagctactgtcagggg |
507 |
Q |
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| T |
46129500 |
caggcacaaaccgttcttgcaatgaaaaaggacttactgtcggacgaccctgctgcacaactggaagcagctactcagtttggaaagctactgtcagggg |
46129599 |
T |
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| Q |
508 |
gtatgaatgtagtcgttgtattttacctggggtgttttactcgtttcttatgttatgcctaaattctatg |
577 |
Q |
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| T |
46129600 |
gtatgaatgtagtggttgtattttacctggggtgttttactcgtttcttatgttatgcctaaattctatg |
46129669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 46701912 - 46702267
Alignment:
| Q |
6 |
gggtagataatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaatgttagaaggatagagtagaag |
105 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
46701912 |
gggtaaataatactccattagtaat-gaaaatggttaataatatgactctaacgaaatatgccaaacttgacacttaatgttagaaggatagattagaag |
46702010 |
T |
|
| Q |
106 |
aactaattattctatg--atgttaagataccaaaaatttgttgtattgttggaaaattcaaaattgtaattaatactttcatgttttagaatttagggta |
203 |
Q |
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| T |
46702011 |
aactaattattctatgatatgttaagataccaaaaatttgttgtattgttgg-------aaaattgtaattaatactttcatgttttagaatttagggta |
46702103 |
T |
|
| Q |
204 |
actatgatagttgttccatatcaagagcatagccatgattaaggagcggtaccaattgccaatataagaggctttaacagaattctgtt------gnnnn |
297 |
Q |
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| T |
46702104 |
actatgataattgttccatatcaagagcatagccatgattaaggagcgataccaattgccaatataagaggctttatcagaattctattgagagagaaaa |
46702203 |
T |
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| Q |
298 |
nnnnggtccatgttagagctagagctacatataatgcatgtcggacgacccttaatgttcttta |
361 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46702204 |
aaaaagtccattttagagttagagctacatataatgcatgtcggacgacccttaatgttgttta |
46702267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 366 - 572
Target Start/End: Original strand, 46702243 - 46702450
Alignment:
| Q |
366 |
gtcggatgaaccttaatgttgtttactcttaatgttgtttaacaggcacaaaccgttcttgcaatgaaaaaggacttactgtcggacgaccctgctgcac |
465 |
Q |
| |
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|||||| || |||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||| ||| |||||||||||||||||||||||||| |
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| T |
46702243 |
gtcggacgacccttaatgttgtttactcttaatggtgtttaacaggcgcaaaccattcctgcaatgaaacagggcttactgtcggacgaccctgctgcac |
46702342 |
T |
|
| Q |
466 |
aactggaagcaactactcagtttggaaagctactgtcagggggtatgaatgtagtcgttgtattttacctggggtgttttactcgtttcttatg-ttatg |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||| ||||| |
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| T |
46702343 |
aactggaagcaactactcagtttggaaagctactgtcagggggtatgaatgtagtcattatattttatctggggtgtaatactcgtttcttatgtttatg |
46702442 |
T |
|
| Q |
565 |
cctaaatt |
572 |
Q |
| |
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|||||||| |
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| T |
46702443 |
cctaaatt |
46702450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 387 - 577
Target Start/End: Original strand, 46123452 - 46123643
Alignment:
| Q |
387 |
tttactcttaatgttgtttaacaggcacaaaccgttcttgcaatgaaaaaggacttactgtcggacgaccctgctgcacaactggaagcaactactcagt |
486 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||| |||||||| | || |||| |||| ||||||||||||||||||| |||||||||||||||| |
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| T |
46123452 |
tttactcttaatgttgtttaacaggtgaaaaccattcctgcaatgacactggccttattgtctaacgaccctgctgcacaacttgaagcaactactcagt |
46123551 |
T |
|
| Q |
487 |
ttggaaagctactgtcagggggtatgaatgtagtcgttgtattttacctggggtgttttactcgt-ttcttatgttatgcctaaattctatg |
577 |
Q |
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| T |
46123552 |
ttggaaagctactatcagggggtatgaatgtaatcattatattttatttgggatgtaatactcttcttctaatgtgatgcctaaattatatg |
46123643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 46123110 - 46123256
Alignment:
| Q |
13 |
taatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgacacttaatgttagaaggatagagtagaagaactaat |
112 |
Q |
| |
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|||| |||||||||||||| ||||||| |||||||||| | |||||| ||| |||||||||| | | |||| ||| ||| ||||| ||||||||| |
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| T |
46123110 |
taatgctccattagtaatttaaaatggcagataatatgacacaaacgaattattctaaacttgaaattaaatg--agatggagggagtaaaagaactaac |
46123207 |
T |
|
| Q |
113 |
tattctatg--atgttaagataccaaaaatttgttgtattgttggaaaat |
160 |
Q |
| |
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|| |||||| |||||||||||||||||| ||| |||||| ||||||||| |
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| T |
46123208 |
tagtctatgatatgttaagataccaaaaacttg-tgtattattggaaaat |
46123256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 46123358 - 46123395
Alignment:
| Q |
302 |
ggtccatgttagagctagagctacatataatgcatgtc |
339 |
Q |
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||||||| ||||| |||||||||||||||||||||||| |
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| T |
46123358 |
ggtccattttagacctagagctacatataatgcatgtc |
46123395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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