View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_13 (Length: 592)
Name: NF8963_low_13
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 123 - 576
Target Start/End: Original strand, 53677749 - 53678202
Alignment:
| Q |
123 |
tagttagtacatgaatttggtagccatgagaaagtgaaagcgacgaagagtgtcccaaaagagagtagggtcgttaacgacgtcgttgtgagaggcgagt |
222 |
Q |
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| T |
53677749 |
tagttagtacatgaatttggtagccatgagaaagtgaaagcgacgaagagtgtcccaaaagagagtagggtcgttaacgacgtcgttgtgagaggcgagt |
53677848 |
T |
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| Q |
223 |
gggggaggatagtgtttggcttcgtcgtcgtcgccggagttcttgcttctcaccgccgatgatgacatttttagtagttcacgtcgccggaactgcttga |
322 |
Q |
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| T |
53677849 |
gggggaggatagtgtttggcttcgtcgtcgttgccggagttcttgcttctcaccgccgatgatgacatttttagtagttcacgtcgccggaactgcttga |
53677948 |
T |
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| Q |
323 |
aaatttaatttaataagttgaagaatgtttttaccgttggggtttgagtaaatagcagaatgaaagatagaaaaagtagtactagtaaatgagaggagag |
422 |
Q |
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| T |
53677949 |
aaatttaatttaataagttgaagaatgtttttaccgttgtggtttgagtaaatagcagaatgaaagatagaaaaagtagtactggtaaatgagaggagag |
53678048 |
T |
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| Q |
423 |
taaatagaatagtnnnnnnnggaacgataattcctaagatgagagaaaatgaaaatgaaattaggagtagtaagtaaaagtacaaagcaattaagttctg |
522 |
Q |
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| T |
53678049 |
taaatagaatagtaaaaaaaggaacgataattcctaagatgagagaaaatgaaaatgaaattaggagtagtaagtaaaagtacaaagcaattaagttctg |
53678148 |
T |
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| Q |
523 |
agaaaagctgaaaaaattaaagaagatgatttgccgcgtgggagggaacggtta |
576 |
Q |
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| T |
53678149 |
agaaaagctgaaaaaattaaagaagatgatttgccgcgtgggagggaacggtta |
53678202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 53677627 - 53677706
Alignment:
| Q |
1 |
gcaaatcaagctccttaccaccaatcacaggaatcctatgcaaaatgaaatcacatttataatagtactttgatgttgtt |
80 |
Q |
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| T |
53677627 |
gcaaatcaagctccttaccaccaatcacaggaatcctatgcaaaatgaaatcacatttataatagtactttgattttgtt |
53677706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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