View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_14 (Length: 524)
Name: NF8963_low_14
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 506
Target Start/End: Original strand, 9569745 - 9570238
Alignment:
| Q |
17 |
ttcttgaacagagactacgttattaataaatttttccgttcaannnnnnnnnncctttcatcaatatcaaaagaaagtagattaagtaagacctacttgt |
116 |
Q |
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| T |
9569745 |
ttcttgaatagagactatgttattaataaatttttccgttcaatttttttttttctttcatcaatatcaaaagaaagtagattaagcaagacctacttgt |
9569844 |
T |
|
| Q |
117 |
tgctttgtatctatctaattgtttttctccatacagatatctaccttagacccttgcatttacaaacttccaactaattgagtcacaaagaaaaggtctt |
216 |
Q |
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| T |
9569845 |
tgctttgtatctatctaattgtttttctccatacagatatctaccttagacccttgcatttacaaacttccaactaattgagtcacaaagaaaaggtctt |
9569944 |
T |
|
| Q |
217 |
tgtgcctttccacgttatccatcacaaccaaccaatcttggagacatttttccattctcattatttataactaccagcc----taatcagttaagtggga |
312 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9569945 |
tgtgcctttccacgttatccatcacaaccacccaatcttggagacatttttccattctcattatttataactaccagcctaattaatcagttaagtggga |
9570044 |
T |
|
| Q |
313 |
gacataggctatcaaattaagaaagagtcaaaatgaaggtatgtctaaactcttaacaatttatgatgaaaatgttctttcaaacctttggcttgatcca |
412 |
Q |
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| T |
9570045 |
gacattggctatcaaattaagaaagagtcaaaatgaaggtatgtctaaactcttaacaatttatgatgaaaatgttctttcaaacctttggcttgatcca |
9570144 |
T |
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| Q |
413 |
caccttttacctcctgcagttgcttcaatgggtgcatcgaaaacttcggcagaccagtcttgatccctttaaagatttcacaattggtagtcag |
506 |
Q |
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| T |
9570145 |
caccttttacctcctgcagttgcttcaatgggtgcatcgaaaacttcggcagaccaatcttgatccctttaaagatttcacaattggtagtcag |
9570238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 9772933 - 9773008
Alignment:
| Q |
121 |
ttgtatctatctaattgtttttctccatacagatatctaccttagacccttgcatttacaaacttccaactaattg |
196 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||| |
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| T |
9772933 |
ttgtatctatctaattgtttttctccatacagacatctatcttagacccttgcatataccaacttccaactcattg |
9773008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 9773094 - 9773130
Alignment:
| Q |
325 |
caaattaagaaa-gagtcaaaatgaaggtatgtctaa |
360 |
Q |
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| T |
9773094 |
caaattaagaaaagagtcaaaatgaaggtatgtctaa |
9773130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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