View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_16 (Length: 522)
Name: NF8963_low_16
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 32739228 - 32738727
Alignment:
| Q |
1 |
gtctttcgtcttcacttaatctgtactcttctctcatattttctcatctatattatatggaagagaagctatggaatgataaacatccatgttcatgaca |
100 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32739228 |
gtctttcctcttcacttaatttgtactcttctctcatattttctcatctatatgatatggaagagaagctatggaatgataaacatccatgttcatgaca |
32739129 |
T |
|
| Q |
101 |
ttgcagctgaattgcaacaacccaaggcatttagaggtatcaacactacatatggaaagcatagttgagtttatccttcacctggacgcctcaaactcaa |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32739128 |
ttgcagctgaattgca-----ccaaggcatttagaggtataaacactacatatggaaagcatagttgagtttatccttcacctggacgcctcaaactcaa |
32739034 |
T |
|
| Q |
201 |
tgtcgatggatcatactttaccagcattggaagctcaccttgtggtgggttgattcgtgatcaacatggtaaatttgtgtattgttttatgcgtaaagtt |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
32739033 |
tgtcgatggattatactttaccagcattggaagctcaccttgtggtgggttgattcgtgatcaacatggtaaatttgtgtattggtttatacgtaaagtt |
32738934 |
T |
|
| Q |
301 |
tcatcttcaaatacccttgcaacttaacagtggcaattcttttcggccttcaacttcttcaatcccaacacctacaacatgtgttaattaaatctcattc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32738933 |
tcatcttcaaatacccttgcaacttaacagtggcaattcttttcggccttcaacttcttcaatcccaacacctacaacatgtgttaattaaatctcattc |
32738834 |
T |
|
| Q |
401 |
taaaatgtcagtgaatatgattcatagtggctacaccaatattcctcatccgcattatgtacttgcatacatacattctccaaaatcctgatataaatat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32738833 |
taaaatgtcagtgaatatgattcatagtggctacaccaatattcctcatccgcattatgtacttgcatacatacattctccaaaatcctgatataaatat |
32738734 |
T |
|
| Q |
501 |
tgagtta |
507 |
Q |
| |
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||||||| |
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|
| T |
32738733 |
tgagtta |
32738727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 183 - 389
Target Start/End: Complemental strand, 38250599 - 38250392
Alignment:
| Q |
183 |
tggacgcctcaaactcaatgtcgatggatcatactttaccagcattggaagctcaccttgtggtgggttgattcgtgatcaacatggtaaatttgtgtat |
282 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||||||| | ||||||| |||||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
38250599 |
tggacgactcaaactcaatgtagatggatcatattttaccagcgtcggaagcttggcttgtggtggcttgattcgtgaccaacaaggtaaatttgtgtat |
38250500 |
T |
|
| Q |
283 |
tgttttatgcgtaaagtttcatcttcaaatacccttgcaacttaacagtgg-caattcttttcggccttcaacttcttcaatcccaacacctacaacatg |
381 |
Q |
| |
|
|||||||| | || || | |||||||||| ||| ||||| | | |||| ||||||||| |||| || |||| ||||||| || |||||| ||| | |
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| T |
38250499 |
gattttatgctttaaattacctcttcaaataaactttcaactgagccgtggacaattctttccggctttggacttgttcaatctcagcacctaatacacg |
38250400 |
T |
|
| Q |
382 |
tgttaatt |
389 |
Q |
| |
|
|||||||| |
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|
| T |
38250399 |
tgttaatt |
38250392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 6309084 - 6308972
Alignment:
| Q |
185 |
gacgcctcaaactcaatgtcgatggatcatactttaccagcattggaagctcaccttgtggtgggttgattcgtgatcaacatggtaaatttgtgtattg |
284 |
Q |
| |
|
|||||||||||||||| || |||| |||| ||||||| ||| | |||| || ||||||||||||| |||||||||||||||||||||||||| || | |
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|
| T |
6309084 |
gacgcctcaaactcaacgttgatgaatcacactttacaagcggttgaagttcgacttgtggtgggttaattcgtgatcaacatggtaaatttgtataggg |
6308985 |
T |
|
| Q |
285 |
ttttatgcgtaaa |
297 |
Q |
| |
|
| ||||||||||| |
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|
| T |
6308984 |
tgttatgcgtaaa |
6308972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 205 - 444
Target Start/End: Complemental strand, 34099495 - 34099253
Alignment:
| Q |
205 |
gatggatcatactttaccagcat--tggaagctcaccttgtggtgggttgattcgtgatcaacatggtaaatttgtgtattg-ttttatgcgtaaagttt |
301 |
Q |
| |
|
||||||||| | ||||||| ||| |||||||||| |||||||| ||||||| ||||| |||||| |||||||||| |||| |||||| ||||| || |
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| T |
34099495 |
gatggatcacattttaccaacatgatggaagctcaacttgtggtaagttgatttgtgatgaacatgctaaatttgtg-attgattttatttgtaaaatta |
34099397 |
T |
|
| Q |
302 |
catcttcaaatacccttgcaacttaacagtggc-aattcttttcggccttcaacttcttcaatcccaacacctacaacatgtgttaattaaatctcattc |
400 |
Q |
| |
|
|| |||||||||| ||||||| | || ||||| |||||||| |||||| ||| |||| ||||||||| | ||||||||| |||| |||| | |||| |
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|
| T |
34099396 |
caacttcaaatactcttgcaattgaattgtggccaattctttctagccttcgccttgttcattcccaacacttgcaacatgtgataataaaatttgattc |
34099297 |
T |
|
| Q |
401 |
taaaatgtcagtgaatatgattcatagtggctacaccaatattc |
444 |
Q |
| |
|
||| || |||| ||||||||||| ||||||| | |||||||| |
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|
| T |
34099296 |
caaagtggtagtggatatgattcattgtggctatatcaatattc |
34099253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 34544922 - 34544983
Alignment:
| Q |
215 |
actttaccagcattggaagctcaccttgtggtgggttgattcgtgatcaacatggtaaattt |
276 |
Q |
| |
|
|||||||||||| ||||| || | |||||||||||||||| ||||||||||||||||||||| |
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| T |
34544922 |
actttaccagcaatggaaacttaacttgtggtgggttgatccgtgatcaacatggtaaattt |
34544983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 42502369 - 42502262
Alignment:
| Q |
189 |
cctcaaactcaatgtcgatggatcatactttaccagcattggaagctcaccttgtggtgggttgattcgtgatcaacatggtaaatttgtgtattgtttt |
288 |
Q |
| |
|
|||||||||||||| ||||||||| | |||| | || ||| |||||| |||||||| |||||||||||||||| | |||||||||||||| ||||| |
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| T |
42502369 |
cctcaaactcaatgacgatggatctca-tttattaacaatggtagctcagcttgtggttggttgattcgtgatcatcgtggtaaatttgtgttaggtttt |
42502271 |
T |
|
| Q |
289 |
atgcgtaaa |
297 |
Q |
| |
|
||| ||||| |
|
|
| T |
42502270 |
atgtgtaaa |
42502262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 7701768 - 7701697
Alignment:
| Q |
187 |
cgcctcaaactcaatgtcgatggatcatactttaccagcattggaagctcaccttgtggtgggttgattcgt |
258 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||| ||||| |||||||| |||||| ||||||||||||| |
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|
| T |
7701768 |
cgcctcaaactcaatgtcgatgggtcacattttatcagcaatggaagcttcgcttgtgttgggttgattcgt |
7701697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 42874756 - 42874842
Alignment:
| Q |
194 |
aactcaatgtcgatggatcatactttaccagcattggaagctcaccttgtggtgggttgattcgtgatcaacatggtaaatttgtgt |
280 |
Q |
| |
|
|||||||| | ||||||||||| ||||| |||| || |||||| ||| |||| | ||||||||||||||| |||||||||||||| |
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|
| T |
42874756 |
aactcaatttagatggatcatattttacaagcaatgaaagctcggcttatggtagtttgattcgtgatcaatttggtaaatttgtgt |
42874842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 40526044 - 40526114
Alignment:
| Q |
156 |
aaagcatagttgagtttatccttcacctggacgcctcaaactcaatgtcgatggatcatactttaccagca |
226 |
Q |
| |
|
|||||||||||||||| ||||| | ||||| |||| ||||||||||| | ||||||| ||||| |||||| |
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|
| T |
40526044 |
aaagcatagttgagttcatcctcctcctgggtgcctgaaactcaatgtagttggatcacacttttccagca |
40526114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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