View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8963_low_18 (Length: 492)
Name: NF8963_low_18
Description: NF8963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8963_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 23 - 479
Target Start/End: Complemental strand, 6486212 - 6485756
Alignment:
| Q |
23 |
tcagacagcaagaacattcgtgtgtggaagaatcttcaagaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaa |
122 |
Q |
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| T |
6486212 |
tcagacagcaagaacattcgtgtgtggaagaatcttcaagaatattgcggattcaaatccaacagtggactggtgaaagcaatcataatatccggtcaaa |
6486113 |
T |
|
| Q |
123 |
agatcttcactggtcaccaagacggtaaaatccgtgtttggaaagtttctctcaagaaccctagcgttcacaaacgtgccggaacattaccaacactcaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6486112 |
agatcttcactggtcaccaagacggtaaaatccgtgtttggaaagtctctctcaagaaccctagcgttcacaaacgtgctggaacattaccaacactcaa |
6486013 |
T |
|
| Q |
223 |
agacatcttcaaaagctcgattaaaccaagcaattatgtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgccta |
322 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6486012 |
agacatcttcaaaagctcaattaaaccaagcaattatgtcgaggttagaaaacaccgaactgcattatggatcaaacattcggatgcagtttcatgccta |
6485913 |
T |
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| Q |
323 |
agcctttctccagacaaaacctacctctactctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattactt |
422 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485912 |
agtctttctccagacaaaacctacctctactctgcttcatgggacagaaccgtcaaagtttggagaatcgccgattcaaagtgcttggaatccattactt |
6485813 |
T |
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| Q |
423 |
cccatgaggatgcagttaacgccgtcgtttgtggaaacgacggaattgttttctctg |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6485812 |
cccatgaggatgcagttaacgccgtcgtttgtggaaacgacggaattgttttctctg |
6485756 |
T |
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